mRNA_L-elsbetiae_contig1985.5935.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1985.5935.1 vs. uniprot
Match: A0A6H5LC46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC46_9PHAE) HSP 1 Score: 264 bits (674), Expect = 7.830e-72 Identity = 198/357 (55.46%), Postives = 214/357 (59.94%), Query Frame = 1 Query: 2839 PPRTLFSASSFGRRGPXXXXXXXXXXXXXXXXXXX-KWRPSFGSXXXXXXXGQS-PAGAMHAPWAAFSTPSRDRDGAVVPPSGSMGAGTIGSAASARRRRGGGAG---NGPLGRLLQQVRARCDGDEARLLSGEFPFRQASTLKASSGDPDGSENSGXXXXXXXXXXXXXXXVRSRRDHGDPRTRCSVALDVTVLRPAPRQSAALVGLAGXXXXXERNSGYGQGG-GASGGLVWFSCLVHRVVDVSSGSSSRGNSSGSGSSCRASPGDDRS--EGAATRIGRLRPLEGGCVDAFFKQDTRRAVDMCPGSQLRIYDPCCAWYDGQAGAEAGGGGAGALLMCTQLCEPYPSSLPPLPAP 3885 PPRT+F+ SSFGR P XXXXXXXXXXXXXXXX KWRPSFGS GQS AGA HAP AAFSTP+RD NGPLGRLLQQVRARCDGDEARLLSGEFPFRQ S+ AS G+ NS XXXX +SRRD+GDPRTRCSVALD TV+ PA + VG G + GQ G G + GLVWFSC VH VVDVS G GN GS C S D + AT G L LEG VD FKQDTRRAVD+ PGSQLRIYDP C WYD + G E GG A ALL+CTQLCEPYPS LP LP+P Sbjct: 276 PPRTMFAPSSFGRSAPTSXXXXXXXXXXXXXXXXGGKWRPSFGSAGGARGGGQSLAAGATHAPRAAFSTPARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPLGRLLQQVRARCDGDEARLLSGEFPFRQPSS--ASKSTTGGNNNS---HLDGVGVXXXXSGAKSRRDYGDPRTRCSVALDATVMLPAATPRGSSVGFEGGLWGGGEGNELGQAGRGGASGLVWFSCFVHHVVDVSLGLG--GNRVRPGSRCATSAAGDAAGWSSVATDFGCLHRLEGVRVDGLFKQDTRRAVDVGPGSQLRIYDPSCVWYDAEVGGE--GGRAEALLVCTQLCEPYPSCLPALPSP 623
BLAST of mRNA_L-elsbetiae_contig1985.5935.1 vs. uniprot
Match: D7FXF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF5_ECTSI) HSP 1 Score: 220 bits (560), Expect = 1.530e-54 Identity = 161/333 (48.35%), Postives = 173/333 (51.95%), Query Frame = 1 Query: 2839 PPRTLFSASSFGRRGPXXXXXXXXXXXXXXXXXXXKWRPSFGSXXXXXXXGQSPA-GAMHAPWAAFSTPSRDRDGAVVPPSGSMGAGTIGSAASARRRRGGGAG-----NGPLGRLLQQVRARCDGDEARLLSGEFPFRQASTLKASSGDPDGSENSGXXXXXXXXXXXXXXXVRSRRDHGDPRTRCSVALDVTVLRPAPRQSAALVGLAGXXXXXERNSGYGQ-GGGASGGLVWFSCLVHRVVDVSSGSSSRGNSSGSGSSCRASPGDDR----------SEGAATRIGRLRPLEGGCVDAFFKQDTRRAVDMCPGSQLRIYDPCCAWYDGQ 3786 PPRT+F+ S+FGR GP KWRPSFGS GQSPA GAMHAP AAFSTP+RDR NGPLGRLLQQVRARCDGDEARLLSGEFPFRQ S+ ++ S X XXXX +SRRD GDPRTRC VALD TV+ PA VG G + GQ GGG GLV FSC VH VVDVS S G S R SPG R G AT GRL LEG VD FKQDTRRAVD+ PGSQLRIYDPCC WYD + Sbjct: 912 PPRTMFAPSTFGRSGPTASSAAAASTSASTTGG--KWRPSFGSASGARGGGQSPAAGAMHAPRAAFSTPARDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPLGRLLQQVRARCDGDEARLLSGEFPFRQPSSASKATT----SXXXXXGHLDDVGVGXXXXGGKSRRDPGDPRTRCRVALDATVMLPAATPRGPSVGFEGGLWGGGEGNELGQAGGGGVTGLVRFSCFVHHVVDVSL---SLGGS-------RVSPGSRRVTSAVGYAAGPSGVATDFGRLHRLEGVRVDGIFKQDTRRAVDVGPGSQLRIYDPCCVWYDAE 1228 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1985.5935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1985.5935.1 >prot_L-elsbetiae_contig1985.5935.1 ID=prot_L-elsbetiae_contig1985.5935.1|Name=mRNA_L-elsbetiae_contig1985.5935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1296bp MHRTAERYHHQRREEQGRGDGYDEDWDDDVYYAAASRPGSAGSSSGGARGback to top mRNA from alignment at L-elsbetiae_contig1985:8143..16528- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1985.5935.1 ID=mRNA_L-elsbetiae_contig1985.5935.1|Name=mRNA_L-elsbetiae_contig1985.5935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8386bp|location=Sequence derived from alignment at L-elsbetiae_contig1985:8143..16528- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1985:8143..16528- >mRNA_L-elsbetiae_contig1985.5935.1 ID=mRNA_L-elsbetiae_contig1985.5935.1|Name=mRNA_L-elsbetiae_contig1985.5935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7776bp|location=Sequence derived from alignment at L-elsbetiae_contig1985:8143..16528- (Laminarionema elsbetiae ELsaHSoW15)back to top |