mRNA_L-elsbetiae_contig1982.5926.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1982.5926.1
Unique NamemRNA_L-elsbetiae_contig1982.5926.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1982.5926.1 vs. uniprot
Match: D7FV98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV98_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.330e-43
Identity = 86/123 (69.92%), Postives = 100/123 (81.30%), Query Frame = 1 
Query:    1 KTRQGRRDGIVERAISEADDLVVCVLDAGGGEEDGREADDGSAQPPPLLRGFDDDWEAFRARGEYSTEHSELETAPLATESAATALPVSGNSTVLDRVGGCELVLARRVGPAEVVKQLHLLPL 369
            K++   RDGIVERAISEA+DLVVCVL  GG E+D RE +  SA+PPPLLR FDDDWEA R R EY  E  E E+APLATE  +T+LPVSGNSTVLDR+G C++VLARRVGP EVVK+LHLLP+
Sbjct:  106 KSKTEPRDGIVERAISEAEDLVVCVLHPGG-EQDDRETES-SARPPPLLRSFDDDWEAIRTRREYVPEPLEPESAPLATEPFSTSLPVSGNSTVLDRMGACDVVLARRVGPGEVVKELHLLPI 226
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BLAST of mRNA_L-elsbetiae_contig1982.5926.1 vs. uniprot
Match: A0A6H5LGE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE7_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.410e-28
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:  115 DDGSAQPPPLLRGFDDDWEAFRARGEYSTEHSELETAPLATESAATALPVSGNSTVLDRVGGCELVLARRVGPAEVVKQLHLLPL 369
            DD SAQPPPLLR FDDDWEA R R EY  E  E E APLATE  +T+ PVS NSTVLDR+G C++VLARRVGP EVVK+LHL P+
Sbjct:   73 DDSSAQPPPLLRSFDDDWEAIRTRREYVPEPLEPEGAPLATEPYSTSWPVSSNSTVLDRMGACDVVLARRVGPGEVVKELHLFPI 157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1982.5926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV98_ECTSI2.330e-4369.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGE7_9PHAE1.410e-2870.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1982contigL-elsbetiae_contig1982:12935..13920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size383
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.8518229-CDS-L-elsbetiae_contig1982:12934..130561622815820.8518229-CDS-L-elsbetiae_contig1982:12934..13056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 12935..13056 +
1691683124.5263448-CDS-L-elsbetiae_contig1982:12934..130561691683124.5263448-CDS-L-elsbetiae_contig1982:12934..13056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 12935..13056 +
1622815820.8612027-CDS-L-elsbetiae_contig1982:13661..139201622815820.8612027-CDS-L-elsbetiae_contig1982:13661..13920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 13662..13920 +
1691683124.5395987-CDS-L-elsbetiae_contig1982:13661..139201691683124.5395987-CDS-L-elsbetiae_contig1982:13661..13920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 13662..13920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1982.5926.1prot_L-elsbetiae_contig1982.5926.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1982 12935..13920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1982.5926.1

>prot_L-elsbetiae_contig1982.5926.1 ID=prot_L-elsbetiae_contig1982.5926.1|Name=mRNA_L-elsbetiae_contig1982.5926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
KTRQGRRDGIVERAISEADDLVVCVLDAGGGEEDGREADDGSAQPPPLLR
GFDDDWEAFRARGEYSTEHSELETAPLATESAATALPVSGNSTVLDRVGG
CELVLARRVGPAEVVKQLHLLPLLRR*
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mRNA from alignment at L-elsbetiae_contig1982:12935..13920+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1982.5926.1 ID=mRNA_L-elsbetiae_contig1982.5926.1|Name=mRNA_L-elsbetiae_contig1982.5926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=986bp|location=Sequence derived from alignment at L-elsbetiae_contig1982:12935..13920+ (Laminarionema elsbetiae ELsaHSoW15)
AAGACCAGGCAGGGGCGGCGGGATGGCATCGTCGAGAGAGCGATCTCGGA
GGCGGACGACCTGGTGGTGTGCGTGCTTGACGCCGGGGGGGGAGAGGAAG
ACGGCCGGGAGGCAGACGATGGGTGAGCCTTCCGTTGCATGCACACAAGA
CGCAAGCGCAAAGAAAGACAGACCCCTCAGTTTTTTGTTTTGACATAAAA
ATGCATGTACATAGACTACATATAACACCTTGTTTTGTTGGGTTTCAATC
CGCATCTTCGCGTGTGCGTGGCTGCTGTTTGTCGCGCCGGGGTTTATTAA
TGGTTGAGTGCACTACATACTACCAGCGTATACTACCTAACTTGAACCCG
ACTCGTACAACAGGCCATACCGTCCCCGTTGCGCGGTGTCATCGTACTAA
ATCACTGTAACTAGGATACATATCGAGTATTTTACACCCGAAACCGGCCT
TTCGCGCTGGAGATCGTGTAATGCCCGCGTGTTTTTCGAAGGTCGTTTGT
TCTTTGATGTTTGATGGCATGCTTTTGTTTTCTCTCGCTGAAGATGCATC
CTTTTGGACGCTCTTCAAGATTTGCTGCGAGCAGCAGCAATGGCGGCATA
TGTATTCGCCTACGGTGTATCAGCATATGGGGCTGGCACTGGTCAACGCG
CTGTGTGCTAGTAGGTAGGACGTGAAGGTCGCACCAACGACTCGTGGACG
CTGCCGCTTCTTCGTGCTCGACCGCAGCTCCGCCCAGCCGCCCCCTCTTC
TGCGCGGTTTCGACGATGACTGGGAGGCGTTCCGCGCTCGGGGAGAGTAT
TCGACGGAGCATTCGGAGCTCGAGACTGCCCCGCTGGCGACAGAGTCAGC
TGCCACAGCGTTACCGGTCAGCGGGAATTCCACCGTTTTGGACCGCGTCG
GTGGTTGCGAACTTGTGCTTGCGCGGCGGGTTGGGCCAGCGGAGGTGGTG
AAGCAGCTTCATCTATTGCCATTGCTCCGGAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1982:12935..13920+

>mRNA_L-elsbetiae_contig1982.5926.1 ID=mRNA_L-elsbetiae_contig1982.5926.1|Name=mRNA_L-elsbetiae_contig1982.5926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1982:12935..13920+ (Laminarionema elsbetiae ELsaHSoW15)
AAGACCAGGCAGGGGCGGCGGGATGGCATCGTCGAGAGAGCGATCTCGGA
GGCGGACGACCTGGTGGTGTGCGTGCTTGACGCCGGGGGGGGAGAGGAAG
ACGGCCGGGAGGCAGACGATGGAAGACCAGGCAGGGGCGGCGGGATGGCA
TCGTCGAGAGAGCGATCTCGGAGGCGGACGACCTGGTGGTGTGCGTGCTT
GACGCCGGGGGGGGAGAGGAAGACGGCCGGGAGGCAGACGATGGCTCCGC
CCAGCCGCCCCCTCTTCTGCGCGGTTTCGACGATGACTGGGAGGCGTTCC
GCGCTCGGGGAGAGTATTCGACGGAGCATTCGGAGCTCGAGACTGCCCCG
CTGGCGACAGAGTCAGCTGCCACAGCGTTACCGGTCAGCGGGAATTCCAC
CGTTTTGGACCGCGTCGGTGGTTGCGAACTTGTGCTTGCGCGGCGGGTTG
GGCCAGCGGAGGTGGTGAAGCAGCTTCATCTATTGCCATTGCTCCGGAGG
TGACTCCGCCCAGCCGCCCCCTCTTCTGCGCGGTTTCGACGATGACTGGG
AGGCGTTCCGCGCTCGGGGAGAGTATTCGACGGAGCATTCGGAGCTCGAG
ACTGCCCCGCTGGCGACAGAGTCAGCTGCCACAGCGTTACCGGTCAGCGG
GAATTCCACCGTTTTGGACCGCGTCGGTGGTTGCGAACTTGTGCTTGCGC
GGCGGGTTGGGCCAGCGGAGGTGGTGAAGCAGCTTCATCTATTGCCATTG
CTCCGGAGGTGA
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