mRNA_L-elsbetiae_contig1982.5924.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1982.5924.1
Unique NamemRNA_L-elsbetiae_contig1982.5924.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1982.5924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1982contigL-elsbetiae_contig1982:4541..7814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNSF attachment protein
Ec32 orthologEc-14_000280.1
Exons6
Model size1147
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1982.5924.1prot_L-elsbetiae_contig1982.5924.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1982 4674..7496 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.6562521-UTR-L-elsbetiae_contig1982:4540..46731622815820.6562521-UTR-L-elsbetiae_contig1982:4540..4673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1982 4541..4673 -
1691683124.3798006-UTR-L-elsbetiae_contig1982:4540..46731691683124.3798006-UTR-L-elsbetiae_contig1982:4540..4673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1982 4541..4673 -
1622815820.7241566-UTR-L-elsbetiae_contig1982:7496..75081622815820.7241566-UTR-L-elsbetiae_contig1982:7496..7508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1982 7497..7508 -
1691683124.4445596-UTR-L-elsbetiae_contig1982:7496..75081691683124.4445596-UTR-L-elsbetiae_contig1982:7496..7508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1982 7497..7508 -
1622815820.7328486-UTR-L-elsbetiae_contig1982:7754..78141622815820.7328486-UTR-L-elsbetiae_contig1982:7754..7814Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1982 7755..7814 -
1691683124.4536695-UTR-L-elsbetiae_contig1982:7754..78141691683124.4536695-UTR-L-elsbetiae_contig1982:7754..7814Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1982 7755..7814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.672086-CDS-L-elsbetiae_contig1982:4673..51321622815820.672086-CDS-L-elsbetiae_contig1982:4673..5132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 4674..5132 -
1691683124.388872-CDS-L-elsbetiae_contig1982:4673..51321691683124.388872-CDS-L-elsbetiae_contig1982:4673..5132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 4674..5132 -
1622815820.6843302-CDS-L-elsbetiae_contig1982:5516..55771622815820.6843302-CDS-L-elsbetiae_contig1982:5516..5577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 5517..5577 -
1691683124.3970163-CDS-L-elsbetiae_contig1982:5516..55771691683124.3970163-CDS-L-elsbetiae_contig1982:5516..5577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 5517..5577 -
1622815820.695608-CDS-L-elsbetiae_contig1982:6088..61751622815820.695608-CDS-L-elsbetiae_contig1982:6088..6175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 6089..6175 -
1691683124.4164488-CDS-L-elsbetiae_contig1982:6088..61751691683124.4164488-CDS-L-elsbetiae_contig1982:6088..6175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 6089..6175 -
1622815820.7046359-CDS-L-elsbetiae_contig1982:6747..69921622815820.7046359-CDS-L-elsbetiae_contig1982:6747..6992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 6748..6992 -
1691683124.425976-CDS-L-elsbetiae_contig1982:6747..69921691683124.425976-CDS-L-elsbetiae_contig1982:6747..6992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 6748..6992 -
1622815820.7149358-CDS-L-elsbetiae_contig1982:7406..74961622815820.7149358-CDS-L-elsbetiae_contig1982:7406..7496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 7407..7496 -
1691683124.435723-CDS-L-elsbetiae_contig1982:7406..74961691683124.435723-CDS-L-elsbetiae_contig1982:7406..7496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 7407..7496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1982.5924.1

>prot_L-elsbetiae_contig1982.5924.1 ID=prot_L-elsbetiae_contig1982.5924.1|Name=mRNA_L-elsbetiae_contig1982.5924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MLIHDLLKFNTPDAFLKAALCLQCASGLPEPAPDVLHHRKSEAEAPPPRP
TANSVKATIVALGRASSVFQGSRAYMFATDMLSAEREGDVDVFAARLYAY
NNVCHLDAWYLRILKTIGDHVQAKAVKLRKLRARQASASRPQRAEGRASE
RIKRRQDISIQDDSSEGTLSESNGSESSPEDTLLPANTDSKPKPTAASSS
SSSGPGSGSGSDSVSDSDSYGSASSSGTGSSSSSGASSSSSSESSGRSDE
NSSGSAATTETQTTTASGGEKSGESTGRESRTQTESSSLSARSDSFPRDS
NNSSAASGKKKTN*
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mRNA from alignment at L-elsbetiae_contig1982:4541..7814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1982.5924.1 ID=mRNA_L-elsbetiae_contig1982.5924.1|Name=mRNA_L-elsbetiae_contig1982.5924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3274bp|location=Sequence derived from alignment at L-elsbetiae_contig1982:4541..7814- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCCACGCGCTTGGCCTGGGCGAAAGCTACGTCGAAGCAGCCGCTCT
TTTCCAGGAGGTGAGGCCAGAATGGTGTGCATACGCGGTCAGTTCTTGTT
CAAACAAGGTATCCCCGCACAGAGTGTAAGCTCGGTCAACATGTTTATAA
CCATCTCTAAGGCTCCTGCACCGCACACGCAAATGTCGTGCAACATGTAC
CGCAAGTGTCGATGCAACATGCATCAGCCTGCGCTACGGAGCGACCCATG
ACGAGGCGTTGTGTAAACCAGGGGCCAACGCCGCGCACCACACCAACGAT
TACCAGGTCGGCCGTCGAATGCTGATTCATGATTTGCTCAAGTTCAATAC
CCCGGACGCATTTCTCAAGGCCGCCCTGTGTCTCCAGTGTGCCAGCGGTT
TGCCAGAGGTGAGACAGACCGCGGAGAAGAAGGGTCTAGCGACCGATGAA
ATAATCTGAGTCTATACCTCGAGTAGTTTGGGCCTCGGCCCTGCACGGTA
AATGAATGAGGCGTGTTTTGTCCAGACAATTTCCCGCCAACGAAGAGCGT
CCTCCCTCTTCGGCCAGAGTTGTCGAACAAGACCGATCCCAGAAAACTCA
CACCAAAACTCCAATTACTGCTGCACTCCAAAACAAAATGGGCACACGTG
TTGAGCAATCCTATGCCCCCACCAGCCACTCCCGCGTGATCCCCGCTCGG
AGTTGTAAAATACTTGGAAGTAAGAACGACTCTGCTGTAGGTGCGCACCC
GGAAGACACAACGCGCGTCTGAAGCACCGCACAACGTATCGCTTGCGGCT
ATCTTTTGGGTTACCCCTGCAGCCAGCCCCCGACGTGCTACACCATCGAA
AATCCGAGGCTGAGGCCCCGCCGCCACGGCCCACGGCAAACTCCGTGAAA
GCGACTATAGTGGCGCTGGGCAGGGCTAGTTCTGTGTTCCAGGGATCGAG
GGCCTACATGTTCGCAACGGATATGTTGTCCGCGGAGAGGGAGGGAGACG
TAGACGTCTTCGCGGCGAGGCTGTACGCCTACAACAACGTTTGCCATCTC
GACGCGTGGTACCTGCGGTGAGGAGAAAATAGTTCAGAGGTCGTGCAGAT
TGTTGGTACTCCCGCGAGTGCCAGGGAACGATGGGGGCGTTGTGGGGGCT
GTTCGCGGAGTTTTGGAGCTTGCGTGCTGGTCAATACTTCTGTCAGGAAA
AAGGTACCTGAAGTGTATGTAGCTGTGCTCCATGCAATGGTTCATTCTGA
AATGGCTTCCACGCTCGTCTGTCTCATAGAGAGCTTGTGGCCATGATCAT
GGAGGAACAACTTTCGGCGGGCCTTTGGTAAACAGCAGTAGTATATAGTG
AAATAGTGAGATAGTATGGGGTCGAAACCTCAGCCCCCCCCCCCCCCCCC
CCCCCCCCAAACACCCCCACCCTTCTTTTTCCCCCTCCCCCCTTTCCCCC
CCCCCCCTCTATCCATCTTCTTCTACNNNNNNNNNNGGAGAAACAACTTT
CGGGGGGCTTTGGGAAAAAACCAAAAATAAAAATAAAAATATGGAAAAAG
TTTGGGGTCAAACCCCCCCCCCCCCCCCCCCCCCCCCCGAATAACAACAC
GTCATCTTTTCTTGCGGCCTTTGCATGCTTCCGCAACAGCATTCTTAAGA
CGATTGGTGACCATGTGCAGGCTAAAGCCGTCAAGCTGCGGAAATTAAGG
GCGAGGCAGGCAAGTGCTAGCCGACCGTTTTGCTAATCGGGTCTTCCGTG
AGGGACGGGTAGCGAGTTAGATATCTAGTTCAGGCCGTTCGTTCACTACG
ATGATAGACCGCGGAAGGCATCATTTATTGGCAACGGGAGTAAAAAACAA
AATCCTTCATCAACAACTTGAGCTCTTTTTCTAGGTTGTGAGGGTGCAGT
ACGTATGTGTGTAGTGTCCATGGCAGAAGATCAGTCGAAAGGCTTCCCCT
GGTACTGGTATAGCCTAAACTAGAGGGCTTCCACGCGAAGTTTCGCTCGT
CACGTTTCTTTTCAGCTCGCTACCCTTATTGTATATCCCACAAATGCTCC
CCGTCACGGGTCAATGAGGGCTCTCCCTACCGTCCGTGGGGTGGATGAAA
GGATCGGAAGGTTAAATGGTAGTTGAGTCAAGACCATGGCAGGGTCCACG
ACTCCCACCCCTGCCGGGACTTATAGCGTTGATATTTGTCAACTGGCCAC
TCGTGTTTTGGGTACTGCAGGAAAAGCTCAGGCGGAGACAACGAGCGGAA
GGGCGCGCTAGCGAACGCATCAAGAGGCGGCAAGATATCAGCATACAGGT
GAAGAAAAGCGTGCGAGTGCTTGAGGTCGTCGTGTGGGTGGATACTCTGG
CAGCGAGACTTACAGGGCTCTACAACAAGAGTGGGCAGGCAGGCACTTTG
TCGAGAATGCTTCGCGTACACTCTTGCTCCATTAAGTTGGGCCCTGAAGT
CAGCGGAAAGCTCTGAAAAACAGGCGGCGCGCTGACCGATGAAGGTGTTA
CCATGCGAATTTGACTGTGCCCGTCCAAGACATGCACAGCAGGCTTGTCA
TACTTGCATATTTGCCGTCCACCCGGCACCCCGCGCAAGTTAGCATCGAG
CCGTGGCAAGTAACACTATGTAGATCACAAACTATCACATCCATCTGCTG
CGTGTGTCCCTTGGCATTTTCACCTCGAACAGGACGACTCCTCGGAAGGA
ACTTTGTCTGAAAGCAACGGGTCTGAGTCGTCGCCGGAGGACACCCTCCT
CCCGGCAAACACGGACTCCAAGCCGAAGCCAACAGCCGCTTCGTCGTCAT
CATCATCCGGGCCTGGCTCGGGTTCCGGCTCGGACTCTGTCAGCGATAGT
GACAGCTACGGCAGCGCGTCGTCATCGGGCACAGGGTCCTCGAGCTCAAG
TGGCGCATCATCATCATCGTCATCCGAGTCATCAGGCCGGTCTGACGAGA
ACAGTTCTGGAAGCGCCGCGACTACTGAGACACAAACCACCACGGCGTCC
GGGGGGGAAAAGTCGGGAGAATCTACAGGACGAGAATCACGAACACAGAC
GGAATCGTCGTCCCTGTCGGCGAGGTCAGATTCGTTTCCGCGGGACAGCA
ACAACAGCAGTGCTGCTAGTGGCAAGAAGAAGACAAACTGAGGGCGCGGT
CAAATTCGCAAAGGGCAAGACGCCATCTAACTCTGACCCGGGCGTGTCTG
AATCGGCATCTGAGTCGTCGGCGGGATCTAGCGAAGATGGTGACGGTGAA
GGGAGGTCGTCTTTCGGATCTTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1982:4541..7814-

>mRNA_L-elsbetiae_contig1982.5924.1 ID=mRNA_L-elsbetiae_contig1982.5924.1|Name=mRNA_L-elsbetiae_contig1982.5924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig1982:4541..7814- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGATTCATGATTTGCTCAAGTTCAATACCCCGGACGCATTTCTCAA
GGCCGCCCTGTGTCTCCAGTGTGCCAGCGGTTTGCCAGAGATGCTGATTC
ATGATTTGCTCAAGTTCAATACCCCGGACGCATTTCTCAAGGCCGCCCTG
TGTCTCCAGTGTGCCAGCGGTTTGCCAGAGCCAGCCCCCGACGTGCTACA
CCATCGAAAATCCGAGGCTGAGGCCCCGCCGCCACGGCCCACGGCAAACT
CCGTGAAAGCGACTATAGTGGCGCTGGGCAGGGCTAGTTCTGTGTTCCAG
GGATCGAGGGCCTACATGTTCGCAACGGATATGTTGTCCGCGGAGAGGGA
GGGAGACGTAGACGTCTTCGCGGCGAGGCTGTACGCCTACAACAACGTTT
GCCATCTCGACGCGTGGTACCTGCGCCAGCCCCCGACGTGCTACACCATC
GAAAATCCGAGGCTGAGGCCCCGCCGCCACGGCCCACGGCAAACTCCGTG
AAAGCGACTATAGTGGCGCTGGGCAGGGCTAGTTCTGTGTTCCAGGGATC
GAGGGCCTACATGTTCGCAACGGATATGTTGTCCGCGGAGAGGGAGGGAG
ACGTAGACGTCTTCGCGGCGAGGCTGTACGCCTACAACAACGTTTGCCAT
CTCGACGCGTGGTACCTGCGCATTCTTAAGACGATTGGTGACCATGTGCA
GGCTAAAGCCGTCAAGCTGCGGAAATTAAGGGCGAGGCAGGCAAGTGCTA
GCCGACCCATTCTTAAGACGATTGGTGACCATGTGCAGGCTAAAGCCGTC
AAGCTGCGGAAATTAAGGGCGAGGCAGGCAAGTGCTAGCCGACCACAACG
AGCGGAAGGGCGCGCTAGCGAACGCATCAAGAGGCGGCAAGATATCAGCA
TACAGACAACGAGCGGAAGGGCGCGCTAGCGAACGCATCAAGAGGCGGCA
AGATATCAGCATACAGGACGACTCCTCGGAAGGAACTTTGTCTGAAAGCA
ACGGGTCTGAGTCGTCGCCGGAGGACACCCTCCTCCCGGCAAACACGGAC
TCCAAGCCGAAGCCAACAGCCGCTTCGTCGTCATCATCATCCGGGCCTGG
CTCGGGTTCCGGCTCGGACTCTGTCAGCGATAGTGACAGCTACGGCAGCG
CGTCGTCATCGGGCACAGGGTCCTCGAGCTCAAGTGGCGCATCATCATCA
TCGTCATCCGAGTCATCAGGCCGGTCTGACGAGAACAGTTCTGGAAGCGC
CGCGACTACTGAGACACAAACCACCACGGCGTCCGGGGGGGAAAAGTCGG
GAGAATCTACAGGACGAGAATCACGAACACAGACGGAATCGTCGTCCCTG
TCGGCGAGGTCAGATTCGTTTCCGCGGGACAGCAACAACAGCAGTGCTGC
TAGTGGCAAGAAGAAGACAAACTGAGACGACTCCTCGGAAGGAACTTTGT
CTGAAAGCAACGGGTCTGAGTCGTCGCCGGAGGACACCCTCCTCCCGGCA
AACACGGACTCCAAGCCGAAGCCAACAGCCGCTTCGTCGTCATCATCATC
CGGGCCTGGCTCGGGTTCCGGCTCGGACTCTGTCAGCGATAGTGACAGCT
ACGGCAGCGCGTCGTCATCGGGCACAGGGTCCTCGAGCTCAAGTGGCGCA
TCATCATCATCGTCATCCGAGTCATCAGGCCGGTCTGACGAGAACAGTTC
TGGAAGCGCCGCGACTACTGAGACACAAACCACCACGGCGTCCGGGGGGG
AAAAGTCGGGAGAATCTACAGGACGAGAATCACGAACACAGACGGAATCG
TCGTCCCTGTCGGCGAGGTCAGATTCGTTTCCGCGGGACAGCAACAACAG
CAGTGCTGCTAGTGGCAAGAAGAAGACAAACTGA
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