Homology
BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Match:
D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)
HSP 1 Score: 106 bits (265), Expect = 5.630e-22
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 3
Query: 144 VENLLQTNTDIVSHLAEFVEGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSHLVSDAAAWVGRLDLLQKARLRGCPCDETTC 440
+E L DIVS + EFV+ +Q+LFFA V + W WG+RP VT+A++AD SVSQL SF CGL R+ V + A +GRLDLL++AR GCP +E TC
Sbjct: 1 MEKQLFAAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENTC 99
BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Match:
A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)
HSP 1 Score: 102 bits (253), Expect = 2.440e-21
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 3
Query: 171 DIVSHLAEFVEGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSHLVSDAAAWVGRLDLLQKARLRGCPCDETTC 440
DIVS +AEFV+ +Q+LFFA V + W WG+RP VT+A++AD SV QL SF CGL R+ V + A +GRLDLL++AR GC +E TC
Sbjct: 8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97
BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Match:
D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI)
HSP 1 Score: 103 bits (258), Expect = 4.100e-21
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 3
Query: 150 NLLQTNTDIVSHLAEFVEGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSHLVSDAAAWVGRLDLLQKARLRGCP 422
N L +N +V+HL E+V+ +Q+LFFA VC+ W WG+RP VTRA + SVSQL +SF+CGL R+ + + AA +GRLDLLQ A L GCP
Sbjct: 7 NPLTSNKTVVNHLMEYVDHNQYLFFATVCRGWSRAWGERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLDLLQCAVLNGCP 97
BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Match:
D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)
HSP 1 Score: 97.4 bits (241), Expect = 2.680e-18
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 3
Query: 156 LQTNTDIVSHLAEFVEGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSHLVSDAAAWVGRLDLLQKARLRGCPCDETTC 440
L +D+ S L EFV+ +QFLFFA VC++W WGQRP TRA++ D +V+QL +F CGL+ V + A +GRLDLLQ AR GC +E TC
Sbjct: 5 LFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVTC 99
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19804.5917.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 5.63e-22 / Id = 52.53 Expect = 2.44e-21 / Id = 54.44 Expect = 4.10e-21 / Id = 53.85 Expect = 2.68e-18 / Id = 50.53 Sequence D7FMS7_ECTSI A0A6H5L0J7_9PHAE D7FWU0_ECTSI D7G8V2_ECTSI
Match Name E-value Identity Description
D7FMS7_ECTSI 5.630e-22 52.53 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE 2.440e-21 54.44 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU0_ECTSI 4.100e-21 53.85 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI 2.680e-18 50.53 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 82.4
Seed ortholog evalue 3.7e-13
Seed eggNOG ortholog 2880.D7FJY0
KEGG ko ko:K06052
KEGG Pathway ko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting category other localisation
EggNOG OGs 2AMK4@1,2RZCC@2759
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko04090
Ec32 ortholog description Ankyrin repeat-containing domain
Ec32 ortholog Ec-13_001200.1
Exons 2
Model size 1337
Cds size 855
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815820.1502676-UTR-L-elsbetiae_contig19804:479..573 1622815820.1502676-UTR-L-elsbetiae_contig19804:479..573 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig19804 480..573 -
1691683124.101668-UTR-L-elsbetiae_contig19804:479..573 1691683124.101668-UTR-L-elsbetiae_contig19804:479..573 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig19804 480..573 -
1622815820.1637783-UTR-L-elsbetiae_contig19804:763..1101 1622815820.1637783-UTR-L-elsbetiae_contig19804:763..1101 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig19804 764..1101 -
1691683124.114721-UTR-L-elsbetiae_contig19804:763..1101 1691683124.114721-UTR-L-elsbetiae_contig19804:763..1101 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig19804 764..1101 -
1622815820.1931472-UTR-L-elsbetiae_contig19804:1956..2006 1622815820.1931472-UTR-L-elsbetiae_contig19804:1956..2006 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig19804 1957..2006 -
1691683124.1363864-UTR-L-elsbetiae_contig19804:1956..2006 1691683124.1363864-UTR-L-elsbetiae_contig19804:1956..2006 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig19804 1957..2006 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815820.1800025-CDS-L-elsbetiae_contig19804:1101..1956 1622815820.1800025-CDS-L-elsbetiae_contig19804:1101..1956 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19804 1102..1956 -
1691683124.1273913-CDS-L-elsbetiae_contig19804:1101..1956 1691683124.1273913-CDS-L-elsbetiae_contig19804:1101..1956 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19804 1102..1956 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19804.5917.1
>prot_L-elsbetiae_contig19804.5917.1 ID=prot_L-elsbetiae_contig19804.5917.1|Name=mRNA_L-elsbetiae_contig19804.5917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=285bp
MGNTLAGQTGTSGPPAKRPAPSQAGRQEASSVENLLQTNTDIVSHLAEFV EGDQFLFFALVCKSWWSRWGQRPKVTRAISADASVSQLQYSFNCGLARSH LVSDAAAWVGRLDLLQKARLRGCPCDETTCAAAAAAGSVSILEFLRDDGC PWFAMTCIRAAEHGHLGVIKYAIANGCSLTEEDKFHVAARAAEGGHLTLL QWLLSEGSVAWNEVMAVYAAQGGQIGVLEWARGKGFPLDVEELTSVAACE GHKNTLLWLRANGFPFDEMTCFGAAQGGCLELLR* back to top mRNA from alignment at L-elsbetiae_contig19804:480..2006-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19804.5917.1 ID=mRNA_L-elsbetiae_contig19804.5917.1|Name=mRNA_L-elsbetiae_contig19804.5917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1527bp|location=Sequence derived from alignment at L-elsbetiae_contig19804:480..2006- (Laminarionema elsbetiae ELsaHSoW15)CAGGTTTAATACAGCGCAGGCGGTGCGTGCAAGAGCTACATTATCGGGTC
ATGGGGAACACCTTGGCGGGCCAAACAGGGACGTCGGGACCTCCGGCGAA
GCGCCCGGCCCCCTCTCAGGCTGGACGTCAGGAAGCATCGTCCGTGGAGA
ACCTTCTGCAGACGAACACCGACATTGTCTCGCACTTGGCAGAGTTCGTG
GAAGGCGACCAGTTCCTGTTCTTCGCGTTGGTGTGCAAGAGCTGGTGGTC
TCGCTGGGGTCAACGCCCCAAGGTTACCAGAGCAATTTCTGCGGACGCGT
CAGTCTCGCAGCTACAGTACAGCTTCAATTGCGGCCTGGCGCGATCCCAC
CTCGTTTCGGATGCAGCCGCGTGGGTGGGCAGACTGGACCTCCTTCAGAA
GGCACGACTAAGAGGCTGTCCTTGCGACGAGACAACCTGTGCGGCGGCTG
CAGCTGCGGGTAGTGTGTCCATCCTAGAGTTCCTTCGAGACGATGGGTGC
CCGTGGTTCGCTATGACGTGTATTAGAGCTGCTGAGCATGGGCATCTTGG
CGTGATCAAGTATGCTATCGCCAACGGGTGCTCATTGACAGAAGAAGACA
AGTTTCACGTGGCCGCCAGAGCTGCCGAAGGGGGTCATTTGACCTTACTC
CAGTGGCTGCTATCTGAAGGCTCCGTTGCGTGGAATGAAGTCATGGCCGT
CTATGCGGCGCAAGGGGGGCAAATCGGTGTGCTTGAGTGGGCGAGGGGAA
AAGGATTTCCGCTTGATGTAGAAGAGCTAACTAGTGTCGCCGCGTGCGAG
GGGCACAAGAACACTCTCCTCTGGCTTCGAGCTAACGGGTTTCCTTTCGA
TGAAATGACTTGTTTCGGGGCTGCTCAAGGAGGTTGTTTAGAGCTACTTC
GGTGA TTACGAGATGAAATGTGCCCGTGGGACGAAAGCACCTGTACTGTG
GCCGCTTTCAGGGGTCACTTGCACATTCTGAAATGGGCTAGAGAGAATGG
GTGCCCGTGGAATGCCGAAGCCTGCTGCAATGCCGCGGTCGCGGGGAATT
TGGACTGTCTGAAGTACCTTAGATCCCAAGGATGTCCGTGGGATGTGGCC
ACCTGCGGATCGGCCGCTGCGTTTGGGCACCTCGATGTCCTAAAATACGC
CCGCTCGGAAGGCTGTCCCTGGAACGATTCCACCACCAAAAACGCCAGGA
AGGGCGGTCACATCAAAAATTTCAACTGGGCGGTCGCAAACGG GTGTGAC
GTTGCTCCTCAGGGTGGTATCATAATGCCACGTCGTTAGGGCGGGGCATG
TTTGGTGGGGGATACACCCTTTTGCTTGCTGGTACTCCCAGTGTTGAATT
TTTTGGACACGGTCGCCATGCCAACGTTTCAGGTGCATGTACCTGTGGTT
AGCCAAAAACTTCGTATCTATTTCGCCGCGCAGAGTGATCTCCTGGCACA
AGGACGAGGAGGAGGCTAGCCGACAACGGGCGATCGACCGAGACAAAAAA
CGGCCCAGCAGTAAAATAGACACGACA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19804:480..2006-
>mRNA_L-elsbetiae_contig19804.5917.1 ID=mRNA_L-elsbetiae_contig19804.5917.1|Name=mRNA_L-elsbetiae_contig19804.5917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1710bp|location=Sequence derived from alignment at L-elsbetiae_contig19804:480..2006- (Laminarionema elsbetiae ELsaHSoW15) ATGGGGAACACCTTGGCGGGCCAAACAGGGACGTCGGGACCTCCGGCGAA GCGCCCGGCCCCCTCTCAGGCTGGACGTCAGGAAGCATCGTCCGTGGAGA ACCTTCTGCAGACGAACACCGACATTGTCTCGCACTTGGCAGAGTTCGTG GAAGGCGACCAGTTCCTGTTCTTCGCGTTGGTGTGCAAGAGCTGGTGGTC TCGCTGGGGTCAACGCCCCAAGGTTACCAGAGCAATTTCTGCGGACGCGT CAGTCTCGCAGCTACAGTACAGCTTCAATTGCGGCCTGGCGCGATCCCAC CTCGTTTCGGATGCAGCCGCGTGGGTGGGCAGACTGGACCTCCTTCAGAA GGCACGACTAAGAGGCTGTCCTTGCGACGAGACAACCTGTGCGGCGGCTG CAGCTGCGGGTAGTGTGTCCATCCTAGAGTTCCTTCGAGACGATGGGTGC CCGTGGTTCGCTATGACGTGTATTAGAGCTGCTGAGCATGGGCATCTTGG CGTGATCAAGTATGCTATCGCCAACGGGTGCTCATTGACAGAAGAAGACA AGTTTCACGTGGCCGCCAGAGCTGCCGAAGGGGGTCATTTGACCTTACTC CAGTGGCTGCTATCTGAAGGCTCCGTTGCGTGGAATGAAGTCATGGCCGT CTATGCGGCGCAAGGGGGGCAAATCGGTGTGCTTGAGTGGGCGAGGGGAA AAGGATTTCCGCTTGATGTAGAAGAGCTAACTAGTGTCGCCGCGTGCGAG GGGCACAAGAACACTCTCCTCTGGCTTCGAGCTAACGGGTTTCCTTTCGA TGAAATGACTTGTTTCGGGGCTGCTCAAGGAGGTTGTTTAGAGCTACTTC GGTGAATGGGGAACACCTTGGCGGGCCAAACAGGGACGTCGGGACCTCCG GCGAAGCGCCCGGCCCCCTCTCAGGCTGGACGTCAGGAAGCATCGTCCGT GGAGAACCTTCTGCAGACGAACACCGACATTGTCTCGCACTTGGCAGAGT TCGTGGAAGGCGACCAGTTCCTGTTCTTCGCGTTGGTGTGCAAGAGCTGG TGGTCTCGCTGGGGTCAACGCCCCAAGGTTACCAGAGCAATTTCTGCGGA CGCGTCAGTCTCGCAGCTACAGTACAGCTTCAATTGCGGCCTGGCGCGAT CCCACCTCGTTTCGGATGCAGCCGCGTGGGTGGGCAGACTGGACCTCCTT CAGAAGGCACGACTAAGAGGCTGTCCTTGCGACGAGACAACCTGTGCGGC GGCTGCAGCTGCGGGTAGTGTGTCCATCCTAGAGTTCCTTCGAGACGATG GGTGCCCGTGGTTCGCTATGACGTGTATTAGAGCTGCTGAGCATGGGCAT CTTGGCGTGATCAAGTATGCTATCGCCAACGGGTGCTCATTGACAGAAGA AGACAAGTTTCACGTGGCCGCCAGAGCTGCCGAAGGGGGTCATTTGACCT TACTCCAGTGGCTGCTATCTGAAGGCTCCGTTGCGTGGAATGAAGTCATG GCCGTCTATGCGGCGCAAGGGGGGCAAATCGGTGTGCTTGAGTGGGCGAG GGGAAAAGGATTTCCGCTTGATGTAGAAGAGCTAACTAGTGTCGCCGCGT GCGAGGGGCACAAGAACACTCTCCTCTGGCTTCGAGCTAACGGGTTTCCT TTCGATGAAATGACTTGTTTCGGGGCTGCTCAAGGAGGTTGTTTAGAGCT ACTTCGGTGA back to top