mRNA_L-elsbetiae_contig1969.5877.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig1969.5877.1
Unique Name	mRNA_L-elsbetiae_contig1969.5877.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig1969.5877.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.070e-53
Identity = 102/241 (42.32%), Postives = 150/241 (62.24%), Query Frame = 1

Query:  394 LPTPARTF-VLSCCVGEKRLQGYDD---KHSLSGIDSVPQI-CGRGGRGHIVNYFDTEAPC-DFDGPPTREQLLACLPDTSEQVCKDYFRALGPSVQRTVLVVRDPRNVVISEHRMREKWSHMPP---PGELDAFIQARFETILAWMHHRWMWHT-TALQASSHVVFLEDFEESHLGLVDLAAFIGLKCSQDEALEVWQHLRNPSPHGNFSTYGLPATTLAWMDEAMSRILPDPMLGRWGL 1086
            +P P   F +++   GE  L  + D   KH + G+   P   C  GGR H  NYF    PC D +  PTRE+L ACL +TS  +C  Y  ++ P V+R+++++RDPR+V +SE  MR K+   P        D F + RFE +++W H R++WHT T +  SSHVVF ED ++ H G + +A F+GL CS+++ALEVW+  RNP+PHG++ST+GL   T+ WM+E M+R+LP  +  RWG+
Sbjct:  141 IPAPKYVFEMVNKTAGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPH-ENYFGDTPPCLDEEDTPTRERLRACLFNTSA-LCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGV 379

[Close]

BLAST of mRNA_L-elsbetiae_contig1969.5877.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.680e-53
Identity = 103/241 (42.74%), Postives = 150/241 (62.24%), Query Frame = 1

Query:  394 LPTPARTF-VLSCCVGEKRLQGYDD---KHSLSGIDSVPQI-CGRGGRGHIVNYFDTEAPC-DFDGPPTREQLLACLPDTSEQVCKDYFRALGPSVQRTVLVVRDPRNVVISEHRMREKWSHMPP---PGELDAFIQARFETILAWMHHRWMWHT-TALQASSHVVFLEDFEESHLGLVDLAAFIGLKCSQDEALEVWQHLRNPSPHGNFSTYGLPATTLAWMDEAMSRILPDPMLGRWGL 1086
            LP P   F +++   GE  L  + D   KH + G+   P   C  GGR H  NYF    PC D +  PTRE+L ACL +TS  +C  Y  ++ P V+R+++++RDPR+V +SE  MR K+   P        D F + RFE +++W H R++WHT T +  SSHVVF ED ++ H G + +A F+GL CS+++ALEVW+  RNP+PHG++ST+GL   T+ WM+E M+R+LP  +  RWG+
Sbjct:  207 LPAPKYVFEMVNKTAGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPH-ENYFGDTPPCLDEEETPTRERLRACLFNTSA-LCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGV 445

[Close]

BLAST of mRNA_L-elsbetiae_contig1969.5877.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 3.750e-49
Identity = 90/213 (42.25%), Postives = 138/213 (64.79%), Query Frame = 1

Query:  466 KHSLSGID-SVPQICGRGGRGHIVNYFDTEAPCDFDGPPTREQLLACLPDTSEQVCKDYFRALGPSVQRTVLVVRDPRNVVISEHRMR------EKWSHMPPPGELDAFIQARFETILAWMHHRWMWHT-TALQASSHVVFLEDFEESHLGLVDLAAFIGLKCSQDEALEVWQHLRNPSPHGNFSTYGLPATTLAWMDEAMSRILPDPMLGRW 1080
            KH + G+D  VP  C  GGR H   + D + PC  D  PTR++L++CL DTS   C  +  +  P+V+R+++++RDPRNVVISE+ MR      E+W+       LD FI  +FE +++W+H R+MWHT T +  SSH+   E+ + SHLGL+D+A F+GL+CS+ +A +VW   R+PSP G +++ GL   T+++M+  M+R+LP  +  RW
Sbjct:   84 KHIIPGMDLGVPVSCRNGGRLHRDYFLDLQ-PCASDEMPTRDRLVSCLYDTSAS-CVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRT---FSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRW 291

[Close]

BLAST of mRNA_L-elsbetiae_contig1969.5877.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 7.660e-44
Identity = 95/242 (39.26%), Postives = 149/242 (61.57%), Query Frame = 1

Query:  397 PTPARTFVL---SCCVGEKRL----QGYDDKHSLSGID-SVPQICGRGGRGHIVNYFDTEAPCDFDGPPTREQLLACLPDTSEQVCKDYFRALGPSVQRTVLVVRDPRNVVISEHRMREKWSHMPP---PGELDAFIQARFETILAWMHHRWMWHTTALQA-SSHVVFLEDFEESHLGLVDLAAFIGLKCSQDEALEVWQHLRNPSPHGNFSTYGLPATTLAWMDEAMSRILPDPMLGRWGL 1086
            P P+  F L   S   G  RL    QG   KH + G+D  +P  C  GGR H   + D + PCD    PTRE+L +CL +T+++ C +Y  +  P+V+R++++ RDPR+VVISE++MR +  H  P      L+ F+Q +FE +++W+H R+MWHT  L   SSHV F ++ ++S +G V +A  +GL+CS+D+A +VW+  +  SP+G F+T  L   T+ +M+  M+R+LP  +  +WGL
Sbjct:  158 PAPSYEFELLNISTPTGRPRLFLHFQGRI-KHIIPGMDLGIPLKCRNGGRLHKEGFMDLQ-PCDSGESPTRERLESCLWNTTKR-CVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGL 395

[Close]

BLAST of mRNA_L-elsbetiae_contig1969.5877.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 3.810e-41
Identity = 89/242 (36.78%), Postives = 134/242 (55.37%), Query Frame = 1

Query:  463 DKHSLSGID--SVPQICGRGGRGHIVNYFDTEAPCDFDGPPTREQLLACLPDTSEQVCKDYFRALGPSVQRTVLVVRDPRNVVISEHRMREKWSHMPPPGEL--DAFIQARFETILAWMHHRWMWHT-TALQASSHVVFLEDFE-----------------------------ESHLGLVDLAAFIGLKCSQDEALEVWQHLRNPSPHGNFSTYGLPATTLAWMDEAMSRILPDPMLGRWGL 1086
            +KH + G+     P+ C +GGR H  N+F+   PC      TREQL  CL +TS + C  +  +     +RT +++RDPR+VV+SE RMR  + H      +  D FI  RF+TI++W H RW+WHT T L  SSHV+F +D +                              + +G++DLAAF+GL+CS+D+A  VW+  +N  PHG+++T+GL   T+ WM+  M+ +LP  +   WGL
Sbjct:   58 NKHVIPGMSWKGHPEGCNQGGRRHR-NFFEDYPPCISGPASTREQLTGCLWNTSSR-CMGFVPSES---RRTAVMLRDPRDVVLSEFRMRRDYYHQEEVMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGL 294

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1969.5877.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1969.5877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
D7FXT7_ECTSI	1.070e-53	42.32	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L6E2_9PHAE	2.680e-53	42.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZR3_9PHAE	3.750e-49	42.25	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L183_9PHAE	7.660e-44	39.26	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5JLX3_9PHAE	3.810e-41	36.78	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1969	contig	L-elsbetiae_contig1969:1932..4170 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	1441
Cds size	423
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1969.5877.1	prot_L-elsbetiae_contig1969.5877.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig1969 2886..3872 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815815.8669477-UTR-L-elsbetiae_contig1969:1931..2599	1622815815.8669477-UTR-L-elsbetiae_contig1969:1931..2599	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1969 1932..2599 +
1691683121.0223045-UTR-L-elsbetiae_contig1969:1931..2599	1691683121.0223045-UTR-L-elsbetiae_contig1969:1931..2599	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1969 1932..2599 +
1622815815.8789527-UTR-L-elsbetiae_contig1969:2833..2885	1622815815.8789527-UTR-L-elsbetiae_contig1969:2833..2885	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1969 2834..2885 +
1691683121.0338554-UTR-L-elsbetiae_contig1969:2833..2885	1691683121.0338554-UTR-L-elsbetiae_contig1969:2833..2885	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1969 2834..2885 +
1622815815.9326203-UTR-L-elsbetiae_contig1969:3872..4170	1622815815.9326203-UTR-L-elsbetiae_contig1969:3872..4170	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1969 3873..4170 +
1691683121.0879867-UTR-L-elsbetiae_contig1969:3872..4170	1691683121.0879867-UTR-L-elsbetiae_contig1969:3872..4170	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1969 3873..4170 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815815.8913698-CDS-L-elsbetiae_contig1969:2885..2954	1622815815.8913698-CDS-L-elsbetiae_contig1969:2885..2954	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1969 2886..2954 +
1691683121.0436683-CDS-L-elsbetiae_contig1969:2885..2954	1691683121.0436683-CDS-L-elsbetiae_contig1969:2885..2954	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1969 2886..2954 +
1622815815.9061124-CDS-L-elsbetiae_contig1969:3305..3395	1622815815.9061124-CDS-L-elsbetiae_contig1969:3305..3395	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1969 3306..3395 +
1691683121.0640082-CDS-L-elsbetiae_contig1969:3305..3395	1691683121.0640082-CDS-L-elsbetiae_contig1969:3305..3395	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1969 3306..3395 +
1622815815.9192924-CDS-L-elsbetiae_contig1969:3608..3872	1622815815.9192924-CDS-L-elsbetiae_contig1969:3608..3872	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1969 3609..3872 +
1691683121.076468-CDS-L-elsbetiae_contig1969:3608..3872	1691683121.076468-CDS-L-elsbetiae_contig1969:3608..3872	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1969 3609..3872 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig1969:1932..4170+
coding sequence from alignment at L-elsbetiae_contig1969:1932..4170+

protein sequence of mRNA_L-elsbetiae_contig1969.5877.1

>prot_L-elsbetiae_contig1969.5877.1 ID=prot_L-elsbetiae_contig1969.5877.1|Name=mRNA_L-elsbetiae_contig1969.5877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MREKWSHMPPPGELDAFIQARFETILAWMHHRWMWHTTALQASSHVVFLE
DFEESHLGLVDLAAFIGLKCSQDEALEVWQHLRNPSPHGNFSTYGLPATT
LAWMDEAMSRILPDPMLGRWGLAAHVANSHQTDGTIQTVH*

mRNA from alignment at L-elsbetiae_contig1969:1932..4170+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig1969.5877.1 ID=mRNA_L-elsbetiae_contig1969.5877.1|Name=mRNA_L-elsbetiae_contig1969.5877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2239bp|location=Sequence derived from alignment at L-elsbetiae_contig1969:1932..4170+ (Laminarionema elsbetiae ELsaHSoW15)
CCACGGTTTCGCGTTCAACTTCGACATGGTCCATGCGGGAACGGGAACAC
CATTTCTGCGTCAAACGGTGACCAGCAAAGGCAGTTCCATACGTACCGCT
TGCTCGAAGAATTGCAGCTGTCGCCGCCTTTAGCTACGGAAATAGTCCAT
CTACATATCTGTGTAGGTGTTTCAGAATCTAGTCCGGCTTCCAAGACAAG
TGAGGATACAATTTGTTGTAGAAATTATGTTCTATCCACCAAGGCCAAAT
ACCAATGGCGGTTGCAGTTAAAGTTGTGCCATCACAGAGTGGATTCGGAT
ACGTTCCCACCGAGAGGTCTACAATAGTGGTAATGAGCAATCTCGGGCTG
CTTGTTTTCAGAGGATCGTCCCTCGAGACCTCGAGGTTGTCCCTTGCCCA
CGCCCGCCCGTACTTTCGTGCTTTCCTGCTGTGTCGGAGAAAAGCGTTTA
CAGGGGTATGATGACAAGCACTCCCTTTCTGGGATAGACAGCGTTCCACA
AATTTGTGGCCGTGGTGGTCGGGGACACATAGTAAACTACTTCGACACTG
AAGCCCCCTGTGATTTTGACGGACCGCCTACACGAGAACAACTACTGGCG
TGCCTCCCAGACACATCGGAACAAGTGTGCAAGGACTACTTTCGAGCTCT
TGGTCCGTCAGTGCAACGGTGGGTCTGCAAATGTGATGGACTTCCTGGAC
TTCCTGTTTGTTGCTAGTGCTTGCTCTCAAGCGGACCACGTGAAGTTCGC
TATAACATGGCATATCGGTTTGTTTTTGCGGCCAGTCATTAAAACAGCTG
GCTTTGAAAAGCACCGATTTAGCCTACCTTGACAACCTCACGACCCGGAA
CGGGTCCGATATTGTCGATGACGGCGCTTCCCTGCCCTTGCACTGTCAAC
AGAACTGTTCTAGTGGTACGAGATCCGCGGAACGTGGTCATATCTGAACA
CAGAATGCGGGAAAAATGGAGCCACATGCCTCCTCCTGGAGAGTTAGATG
CATTCATCCAGGCCCGCTTTGAGGTGAGTCGCGTCACGGATTCAGGTGCA
CCCTCGTGGACATCGATCGAACCCGAAATATCAGGAATGGGGCAGACAAG
AAAATGATATTTGTTATTTGTTGAGTATCGCTGGAGACTACGGGAGAAGA
AAATGTTCCAGTAGAGAAAGCGCAGAGCAGGGTTTCGCTTTGTTTCCATC
GCTCAAGGTAATGCGCAGGTTCTCTCTGGAGGCTCGTAGAGGTGCTCAAT
AAAGCGTGATATTTCAGCAAGCCAATTGGAGGCTTCGATCGAATTATTGG
AATCGTTTCTGCTTGCAAACGATGATTCCGCCCCAGACTGAGAGCGTTTG
TTTATTATCCCCTTCTTTTTGCAGACTATTTTGGCATGGATGCACCATCG
GTGGATGTGGCACACGACAGCTTTGCAGGCATCTTCACACGTAGTTTTCC
TGGAGGATTTTGAGGTAAGGTGTGTTCGGTGGTATAATAAATCACAACGC
CACGGAAGCATGCCCCTGGCCAGTGTTAACCGATGTAAACGGCTGAACCA
TGTTTTCTTGTTGCAAAGACACATTTCGCCCCGCCCGTCATCGTTGTGCG
ACAAAACCGAATGCCTTTTCGACAAATAAACATAAATAAATGCTATTTGT
GCCCGCTTTTCGTGCTAACTCGCTCAGGAAAGCCACCTTGGTTTGGTCGA
CCTGGCTGCGTTTATTGGACTGAAATGTTCTCAGGATGAGGCTCTTGAAG
TTTGGCAACATCTGCGGAATCCGTCGCCCCACGGAAACTTCTCCACGTAC
GGGCTCCCAGCGACAACTCTTGCATGGATGGATGAAGCTATGTCGAGGAT
CCTCCCAGACCCGATGCTCGGCCGTTGGGGACTAGCCGCACACGTTGCTA
ATAGTCATCAGACTGACGGAACAATTCAGACAGTACATTGATCGTCTGCG
TACCAGTTACGCTATTTGGAGTTTATACAGGCTAGTCCGTGGAAGAATAA
GTACGATCCGCGACCGTCGAAGGGGGGCCCGCGGAGGAGAAAATATGGAT
TGGCTGAGAAAGAGGCTTGAGGAACCGTCCTCTGTCGTCAAACCTCCCAA
CCCTAACGGAGTGGAAAGTAGGGATAGGAATAACAGCCATCCCGCCCAGC
CAGCTGTGTATTCACGAGCAATGACGAATGTATATTTTGTATGTTTTCCC
CGAGTAATTACTCTCTGCGCGACTGCGTTGACAACCGGA

Coding sequence (CDS) from alignment at L-elsbetiae_contig1969:1932..4170+

>mRNA_L-elsbetiae_contig1969.5877.1 ID=mRNA_L-elsbetiae_contig1969.5877.1|Name=mRNA_L-elsbetiae_contig1969.5877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig1969:1932..4170+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGAAAAATGGAGCCACATGCCTCCTCCTGGAGAGTTAGATGCATT
CATCCAGGCCCGCTTTGAGATGCGGGAAAAATGGAGCCACATGCCTCCTC
CTGGAGAGTTAGATGCATTCATCCAGGCCCGCTTTGAGACTATTTTGGCA
TGGATGCACCATCGGTGGATGTGGCACACGACAGCTTTGCAGGCATCTTC
ACACGTAGTTTTCCTGGAGGATTTTGAGACTATTTTGGCATGGATGCACC
ATCGGTGGATGTGGCACACGACAGCTTTGCAGGCATCTTCACACGTAGTT
TTCCTGGAGGATTTTGAGGAAAGCCACCTTGGTTTGGTCGACCTGGCTGC
GTTTATTGGACTGAAATGTTCTCAGGATGAGGCTCTTGAAGTTTGGCAAC
ATCTGCGGAATCCGTCGCCCCACGGAAACTTCTCCACGTACGGGCTCCCA
GCGACAACTCTTGCATGGATGGATGAAGCTATGTCGAGGATCCTCCCAGA
CCCGATGCTCGGCCGTTGGGGACTAGCCGCACACGTTGCTAATAGTCATC
AGACTGACGGAACAATTCAGACAGTACATTGAGAAAGCCACCTTGGTTTG
GTCGACCTGGCTGCGTTTATTGGACTGAAATGTTCTCAGGATGAGGCTCT
TGAAGTTTGGCAACATCTGCGGAATCCGTCGCCCCACGGAAACTTCTCCA
CGTACGGGCTCCCAGCGACAACTCTTGCATGGATGGATGAAGCTATGTCG
AGGATCCTCCCAGACCCGATGCTCGGCCGTTGGGGACTAGCCGCACACGT
TGCTAATAGTCATCAGACTGACGGAACAATTCAGACAGTACATTGA