Homology
BLAST of mRNA_L-elsbetiae_contig1967.5868.1 vs. uniprot
Match:
A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE)
HSP 1 Score: 80.5 bits (197), Expect = 8.700e-14
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 4 AEPVLAGRKIVRQLMHVNGVEADELTLTELRASLLSEDALSLAQEGQEHDDTAAVSYVFCHVPI 195
A P+ AGRK+VRQLM VNGVEADELTL E AS+LSEDALSLAQEG DTAAVSY CHV +
Sbjct: 1027 AMPMPAGRKMVRQLMFVNGVEADELTLAE--ASVLSEDALSLAQEG----DTAAVSYAVCHVSV 1084
BLAST of mRNA_L-elsbetiae_contig1967.5868.1 vs. uniprot
Match:
D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI)
HSP 1 Score: 72.8 bits (177), Expect = 3.620e-11
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1
Query: 4 AEPVLAGRKIVRQLMHVNGVEADELTLTELRASLLSEDALSLAQEGQEHDDTAA 165
A P+ AGRK+VRQLM VNGVEADELTL EL AS+LSEDALSLAQEG DTAA
Sbjct: 995 AMPMPAGRKMVRQLMFVNGVEADELTLAELHASVLSEDALSLAQEG----DTAA 1044
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1967.5868.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.70e-14 / Id = 73.44 Expect = 3.62e-11 / Id = 77.78 Sequence A0A6H5JA82_9PHAE D7FZC5_ECTSI
Match Name E-value Identity Description
A0A6H5JA82_9PHAE 8.700e-14 73.44 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZC5_ECTSI 3.620e-11 77.78 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 677
Cds size 675
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815815.1172903-CDS-L-elsbetiae_contig1967:14628..14718 1622815815.1172903-CDS-L-elsbetiae_contig1967:14628..14718 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1967 14629..14718 +
1691683120.6255717-CDS-L-elsbetiae_contig1967:14628..14718 1691683120.6255717-CDS-L-elsbetiae_contig1967:14628..14718 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1967 14629..14718 +
1622815815.1311362-CDS-L-elsbetiae_contig1967:15107..15539 1622815815.1311362-CDS-L-elsbetiae_contig1967:15107..15539 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1967 15108..15539 +
1691683120.6350346-CDS-L-elsbetiae_contig1967:15107..15539 1691683120.6350346-CDS-L-elsbetiae_contig1967:15107..15539 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1967 15108..15539 +
1622815815.1446502-CDS-L-elsbetiae_contig1967:16501..16654 1622815815.1446502-CDS-L-elsbetiae_contig1967:16501..16654 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1967 16502..16654 +
1691683120.6454568-CDS-L-elsbetiae_contig1967:16501..16654 1691683120.6454568-CDS-L-elsbetiae_contig1967:16501..16654 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1967 16502..16654 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1967.5868.1
>prot_L-elsbetiae_contig1967.5868.1 ID=prot_L-elsbetiae_contig1967.5868.1|Name=mRNA_L-elsbetiae_contig1967.5868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
VAEPVLAGRKIVRQLMHVNGVEADELTLTELRASLLSEDALSLAQEGQEH DDTAAVSYVFCHVPISVAEAEAEAAAAAAAAQPAAQQAASATAAPALAVA VAPAAPGPQQAAQAPAAAAGAAAAVAAGGGAPATGVGRALPVTPRLGGGA QPPPPVAAAATAAELPAEPSTPGQVGATNHQDAGKADTTVSSAPARPAAA AAAAARGDNGHHTKKLRNGGGNGPA back to top mRNA from alignment at L-elsbetiae_contig1967:14629..16654+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1967.5868.1 ID=mRNA_L-elsbetiae_contig1967.5868.1|Name=mRNA_L-elsbetiae_contig1967.5868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2026bp|location=Sequence derived from alignment at L-elsbetiae_contig1967:14629..16654+ (Laminarionema elsbetiae ELsaHSoW15)GTTGCGGAGCCCGTGCTCGCCGGTCGGAAGATTGTGCGGCAGCTGATGCA
CGTCAACGGCGTCGAGGCGGACGAGCTCACCCTCACGGAG GTGCGAGTGC
GTCAGGGTTGGTTCCAAAAGGTTCAAGGGGGCGCGGTGAATGGGAGGCGC
TTCACCGTGGGTAGGGTACCTTTGATTGAGAACAACAATTTCTGCACAAC
ATTTTATGTAACCATGATCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGNNNNNNNNNGTTTCTCGTT
CCCACGTGGGTTATGTTCCATTTTCTCCTATACCAATTCTTTCCTCTTTT
TCTGTTTTAATTCCCTTTCTCCCCCCCCCCCCCCCCCCCCCCGGCCCCGC
GCCCCTCTCGCCGCTTGCTGCCGGTCCAGCTCCGCGCAAGCCTCCTCTCC
GAAGACGCCCTCAGCCTGGCCCAAGAAGGCCAAGAACACGACGACACCGC
GGCGGTGAGCTACGTCTTCTGCCACGTGCCTATCTCGGTCGCCGAGGCCG
AGGCCGAGGCAGCGGCAGCGGCAGCGGCAGCTCAACCCGCCGCACAACAA
GCAGCATCCGCAACGGCAGCGCCAGCACTGGCAGTGGCAGTGGCACCGGC
AGCACCAGGACCGCAACAGGCAGCGCAGGCACCAGCAGCTGCTGCCGGCG
CCGCCGCCGCTGTTGCTGCTGGTGGTGGTGCCCCTGCCACAGGTGTTGGT
CGTGCCCTGCCCGTTACTCCTCGGTTGGGAGGTGGAGCACAACCACCGCC
CCCTGTGGCCGCAGCAGCAACGGCAGCAGAATTGCCGGCAGAGCCTTCGA
CGCCTGGGCAG GTATGTGCGAACCAATGTGGTGTGAGTGTGTGTGTGTGT
GTGGTGTGTGCGTGTGGTGTGTGTGTGCGGTGTGCGGTGTATTTGTGTGT
GCGTGTGTGTGTCATGTGTCGCTTAATGGTGGCGCCTCCGTTGTACAACT
CAGAGTATTATTTCACTCGAGCGTGTGATATGATGGGTACAAGGCGATGG
TTTCCTACGTGCGGGGTTCACCCGGTCGATCGTTTGGCGCGGGAGATAGC
CGATGGGTGCCGATCGTAAAGCCGTTTTTTCCAACTTGTCCATCACCCGG
CACCGACGAGGCGGCGATGGGAGTCATTCGGGCAATACACAAAGGTGTTG
TTGGCTCTTTCAACCAGTCGCGGAGCGTTCATTGGCTGTTGCTCGCTTTG
ATTTCGTGCTCGGTTTCTTCCCATAGTTCGTATTTCGTTACTTACTTTCT
GATGGGCAGATGGATATTGACAGTTTCATGGGGGGTGAAATGTTGTGGCG
CTACGGTAGCGCCCGACTCCCTGAACGTCTGGGGTATCTACCCGGCAATA
TTGTTTCTGTTAACGGAAAGTCGGGCCGAAAAAGTGGGTTGTCTAGCCTC
TTGGGAAGGCGGCAAGCGTCTATGACCGGGGCCCCTGACATGCATACGAA
GGCAAGCCGCAAAGGCTTCTCTGTCCCTCGTGCCAGGGTGAAGCCCAAGC
GTGTTGGCTCTCGCTTCCGAGCATACCATGTCCCCCTCTGCAGTCCAAGA
TCTTGGGGGCGACTTTTCTCTTCCTGCGCCAGGCCAACCTTTCCGCACGC
ACACGCTTACACACACGGCTGAATGCTGCCTTGCTTTTGCTTGCTCGCTC
ATCATCGATGGCACGGCTGAGTCGTCAACATGGCGATGCTGAACATGCCT
TGCCCACGCCAGCCTACGGGCTTGGCTAACCCCAAAGCCTATCTCGGCCT
GTTGCCCGTCTTTGCTCGTTCAGGTCGGTGCCACTAACCACCAAGACGCA
GGAAAGGCTGACACTACTGTTTCGAGCGCGCCAGCACGGCCCGCGGCGGC
GGCGGCGGCGGCGGCCAGAGGTGACAATGGTCATCACACAAAAAAACTCA
GAAACGGAGGCGGAAATGGTCCCGCC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1967:14629..16654+
>mRNA_L-elsbetiae_contig1967.5868.1 ID=mRNA_L-elsbetiae_contig1967.5868.1|Name=mRNA_L-elsbetiae_contig1967.5868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig1967:14629..16654+ (Laminarionema elsbetiae ELsaHSoW15) GTTGCGGAGCCCGTGCTCGCCGGTCGGAAGATTGTGCGGCAGCTGATGCA CGTCAACGGCGTCGAGGCGGACGAGCTCACCCTCACGGAGGTTGCGGAGC CCGTGCTCGCCGGTCGGAAGATTGTGCGGCAGCTGATGCACGTCAACGGC GTCGAGGCGGACGAGCTCACCCTCACGGAGCTCCGCGCAAGCCTCCTCTC CGAAGACGCCCTCAGCCTGGCCCAAGAAGGCCAAGAACACGACGACACCG CGGCGGTGAGCTACGTCTTCTGCCACGTGCCTATCTCGGTCGCCGAGGCC GAGGCCGAGGCAGCGGCAGCGGCAGCGGCAGCTCAACCCGCCGCACAACA AGCAGCATCCGCAACGGCAGCGCCAGCACTGGCAGTGGCAGTGGCACCGG CAGCACCAGGACCGCAACAGGCAGCGCAGGCACCAGCAGCTGCTGCCGGC GCCGCCGCCGCTGTTGCTGCTGGTGGTGGTGCCCCTGCCACAGGTGTTGG TCGTGCCCTGCCCGTTACTCCTCGGTTGGGAGGTGGAGCACAACCACCGC CCCCTGTGGCCGCAGCAGCAACGGCAGCAGAATTGCCGGCAGAGCCTTCG ACGCCTGGGCAGCTCCGCGCAAGCCTCCTCTCCGAAGACGCCCTCAGCCT GGCCCAAGAAGGCCAAGAACACGACGACACCGCGGCGGTGAGCTACGTCT TCTGCCACGTGCCTATCTCGGTCGCCGAGGCCGAGGCCGAGGCAGCGGCA GCGGCAGCGGCAGCTCAACCCGCCGCACAACAAGCAGCATCCGCAACGGC AGCGCCAGCACTGGCAGTGGCAGTGGCACCGGCAGCACCAGGACCGCAAC AGGCAGCGCAGGCACCAGCAGCTGCTGCCGGCGCCGCCGCCGCTGTTGCT GCTGGTGGTGGTGCCCCTGCCACAGGTGTTGGTCGTGCCCTGCCCGTTAC TCCTCGGTTGGGAGGTGGAGCACAACCACCGCCCCCTGTGGCCGCAGCAG CAACGGCAGCAGAATTGCCGGCAGAGCCTTCGACGCCTGGGCAGGTCGGT GCCACTAACCACCAAGACGCAGGAAAGGCTGACACTACTGTTTCGAGCGC GCCAGCACGGCCCGCGGCGGCGGCGGCGGCGGCGGCCAGAGGTGACAATG GTCATCACACAAAAAAACTCAGAAACGGAGGCGGAAATGGTCCCGCCGTC GGTGCCACTAACCACCAAGACGCAGGAAAGGCTGACACTACTGTTTCGAG CGCGCCAGCACGGCCCGCGGCGGCGGCGGCGGCGGCGGCCAGAGGTGACA ATGGTCATCACACAAAAAAACTCAGAAACGGAGGCGGAAATGGTCCCGCC back to top