mRNA_L-elsbetiae_contig19412.5760.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19412.5760.1
Unique NamemRNA_L-elsbetiae_contig19412.5760.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig19412.5760.1 vs. uniprot
Match: A0A6H5KNG5_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.100e-9
Identity = 37/78 (47.44%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:    1 EACASIEEDRRALAFAHDVELRLNPWYGRPRTRV---VNESDFALPASSENAGI------------YLTSATWRGGFG 189
            EA A +EEDRRA AFA DV LRL PWYGRPRTR     + +D A  AS   AG+               +A  RGG+G
Sbjct:  757 EARAKVEEDRRAFAFARDVGLRLEPWYGRPRTRSGSGPSVADSAAAASGGTAGVTAPAGEDIATPTMTAAAARRGGYG 834
[Close]
BLAST of mRNA_L-elsbetiae_contig19412.5760.1 vs. uniprot
Match: D8LHG8_ECTSI (BEACH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 9.680e-9
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 EACASIEEDRRALAFAHDVELRLNPWYGRPRTR 99
            EA A +EEDRRA AFAHDV LRL PWYGRPRTR
Sbjct:  767 EARAKVEEDRRAFAFAHDVGLRLEPWYGRPRTR 799
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19412.5760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNG5_9PHAE7.100e-947.44BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LHG8_ECTSI9.680e-981.82BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19412contigL-elsbetiae_contig19412:103..604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue7.6e-07
Seed eggNOG ortholog2880.D8LHG8
KEGG koko:K17601
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aggrephagy
EggNOG OGsKOG1786@1,KOG1786@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.5468242-CDS-L-elsbetiae_contig19412:102..4001622815805.5468242-CDS-L-elsbetiae_contig19412:102..400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19412 103..400 -
1691683114.3014288-CDS-L-elsbetiae_contig19412:102..4001691683114.3014288-CDS-L-elsbetiae_contig19412:102..400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19412 103..400 -
1622815805.5595758-CDS-L-elsbetiae_contig19412:572..6041622815805.5595758-CDS-L-elsbetiae_contig19412:572..604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19412 573..604 -
1691683114.3141232-CDS-L-elsbetiae_contig19412:572..6041691683114.3141232-CDS-L-elsbetiae_contig19412:572..604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19412 573..604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19412.5760.1prot_L-elsbetiae_contig19412.5760.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19412 103..604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19412.5760.1

>prot_L-elsbetiae_contig19412.5760.1 ID=prot_L-elsbetiae_contig19412.5760.1|Name=mRNA_L-elsbetiae_contig19412.5760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
EACASIEEDRRALAFAHDVELRLNPWYGRPRTRVVNESDFALPASSENAG
IYLTSATWRGGFGDNGCAERPGDGISGQDGDGDSENRQRHRERGVSLATK
KKDDLLACG*
back to top

mRNA from alignment at L-elsbetiae_contig19412:103..604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19412.5760.1 ID=mRNA_L-elsbetiae_contig19412.5760.1|Name=mRNA_L-elsbetiae_contig19412.5760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=502bp|location=Sequence derived from alignment at L-elsbetiae_contig19412:103..604- (Laminarionema elsbetiae ELsaHSoW15)
GAAGCATGCGCAAGCATCGAGGAGGACAGGAGGTATGACTTGATCGACTG
CAGGCTTGGTTCCCAACACCGCTCACCCAGCAGTATCCCGTATTCAATCA
CATCAAGACGCCACGTCTTTTGTCACCCCGACCTGGACGTACGCATATTG
TTACCCACGGCACTGATGCGTATGTATGATGTGTATCCAATCCCGGTCCC
ACAGGGCTCTCGCTTTCGCGCACGACGTGGAGCTCCGCTTGAACCCGTGG
TACGGCAGGCCGCGAACCCGTGTCGTAAACGAGTCGGATTTTGCCCTCCC
CGCTTCTTCTGAGAACGCGGGCATTTATCTCACGAGTGCAACATGGCGCG
GTGGCTTCGGAGACAACGGCTGTGCTGAAAGACCCGGTGACGGTATCAGC
GGGCAGGATGGTGACGGTGACAGCGAAAACAGGCAGAGACACCGAGAGAG
AGGCGTGTCGTTGGCGACCAAGAAGAAGGACGACCTTCTCGCGTGCGGGT
GA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19412:103..604-

>mRNA_L-elsbetiae_contig19412.5760.1 ID=mRNA_L-elsbetiae_contig19412.5760.1|Name=mRNA_L-elsbetiae_contig19412.5760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig19412:103..604- (Laminarionema elsbetiae ELsaHSoW15)
GAAGCATGCGCAAGCATCGAGGAGGACAGGAGGAAGCATGCGCAAGCATC
GAGGAGGACAGGAGGGCTCTCGCTTTCGCGCACGACGTGGAGCTCCGCTT
GAACCCGTGGTACGGCAGGCCGCGAACCCGTGTCGTAAACGAGTCGGATT
TTGCCCTCCCCGCTTCTTCTGAGAACGCGGGCATTTATCTCACGAGTGCA
ACATGGCGCGGTGGCTTCGGAGACAACGGCTGTGCTGAAAGACCCGGTGA
CGGTATCAGCGGGCAGGATGGTGACGGTGACAGCGAAAACAGGCAGAGAC
ACCGAGAGAGAGGCGTGTCGTTGGCGACCAAGAAGAAGGACGACCTTCTC
GCGTGCGGGTGAGGCTCTCGCTTTCGCGCACGACGTGGAGCTCCGCTTGA
ACCCGTGGTACGGCAGGCCGCGAACCCGTGTCGTAAACGAGTCGGATTTT
GCCCTCCCCGCTTCTTCTGAGAACGCGGGCATTTATCTCACGAGTGCAAC
ATGGCGCGGTGGCTTCGGAGACAACGGCTGTGCTGAAAGACCCGGTGACG
GTATCAGCGGGCAGGATGGTGACGGTGACAGCGAAAACAGGCAGAGACAC
CGAGAGAGAGGCGTGTCGTTGGCGACCAAGAAGAAGGACGACCTTCTCGC
GTGCGGGTGA
back to top