mRNA_L-elsbetiae_contig19251.5700.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19251.5700.1
Unique NamemRNA_L-elsbetiae_contig19251.5700.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: D8LE97_ECTSI (Cell division cycle 123 homolog (S. cerevisiae) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE97_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 8.700e-37
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1
Query:   13 QPEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCSLPGDILCLLKSSTFISHDLNHA 213
            +P+FP LHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKC LPGD+LCL+KSSTFISHDLNHA
Sbjct:  116 RPDFPDLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCKLPGDVLCLIKSSTFISHDLNHA 182          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: A0A835ZKE4_9STRA (D123-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKE4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.560e-24
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   16 PEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCSLPGDILCLLKSSTFISHDLNHA 213
            PEFP L   L D I  LGGAVFPKLNWS P DAAWVNGGSLKC  PG+++ LLKSS F SHDL HA
Sbjct:  102 PEFPDLLQSLYDGIEQLGGAVFPKLNWSAPLDAAWVNGGSLKCVTPGNVVTLLKSSLFASHDLAHA 167          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: A0A7S0KYW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYW6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.560e-22
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   13 QPEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCSLPGDILCLLKSSTFISHDLNHA 213
            Q  FP L+  +  AI SLGGAV PKLNWS PKDA+W+N G+LKC  PGD+  LLKSS F+ HD+ H+
Sbjct:  111 QFSFPELNVEIKSAIESLGGAVMPKLNWSAPKDASWINNGTLKCQTPGDVYLLLKSSDFVMHDVQHS 177          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: A0A7S4V2C9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V2C9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.250e-20
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   13 QPEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCSLPGDILCLLKSSTFISHDLN 207
            Q  FP L   ++ +I +LGGAV PKLNWSCPKDA WVN G+LKC  PGD+  LLKSS F+ HDL+
Sbjct:  115 QYSFPELTNQITSSINTLGGAVLPKLNWSCPKDATWVNNGTLKCRTPGDVFVLLKSSDFVMHDLS 179          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: A0A6U4E437_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4E437_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.730e-20
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   16 PEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCSLPGDILCLLKSSTFISHDLNHA 213
            P+F GL   + + IA+LGGAVFPKLNWS P+DA W   G+ KC   GDI+ LLKSS F +HDL HA
Sbjct:  114 PDFKGLLRKIDETIAALGGAVFPKLNWSAPRDAVWATAGAAKCGTAGDIVLLLKSSEFAAHDLEHA 179          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: A0A1S8VYJ1_9FUNG (Cell division cycle protein 123 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VYJ1_9FUNG)

HSP 1 Score: 91.7 bits (226), Expect = 3.570e-20
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   16 PEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDILCLLKSSTFISHDLNHA 213
            P FP L A ++ AIA LGGAVFPKLNWS PKDA+W+  G +LKC+ P DI  LLKSS FI+HDL+HA
Sbjct:  117 PSFPLLDAQITAAIADLGGAVFPKLNWSSPKDASWIAFGNTLKCTTPADIYLLLKSSDFIAHDLSHA 183          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: UPI001E8DE588 (D123-domain-containing protein n=1 Tax=Emericellopsis atlantica TaxID=2614577 RepID=UPI001E8DE588)

HSP 1 Score: 91.7 bits (226), Expect = 3.910e-20
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   22 FPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNG--GSLKCSLPGDILCLLKSSTFISHDLNHA 213
            FP  H L+ D IA LGGAV PKLNWS PKDA WVN    +L+C+ P DI  LLKSS+F+SHDLNHA
Sbjct:  117 FPETHQLIKDTIAELGGAVVPKLNWSSPKDAKWVNPHQNTLRCTTPSDIYLLLKSSSFVSHDLNHA 182          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: A0A4P9VWT4_9FUNG (Cell division cycle protein 123 (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VWT4_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 4.560e-20
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   16 PEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDILCLLKSSTFISHDLNHA 213
            P FP L   + DAI  LGGAVFPKLNWS PKDA+W+   G+LKC    DI  LLKSS FI+HDL+HA
Sbjct:   74 PHFPELQTQIDDAIEELGGAVFPKLNWSSPKDASWIAVEGTLKCRTAADIFLLLKSSDFIAHDLSHA 140          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: A0A507C559_9FUNG (Cell division cycle protein 123 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C559_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 4.770e-20
Identity = 44/67 (65.67%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   16 PEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNG-GSLKCSLPGDILCLLKSSTFISHDLNHA 213
            P FP L A +++AI  LGGAVFPKLNWS PKDAAW+   G+LKC  P DI  LLKSS FI HDL+HA
Sbjct:  107 PSFPDLRASITEAIKELGGAVFPKLNWSSPKDAAWITTTGTLKCVDPSDIFLLLKSSDFIVHDLDHA 173          
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Match: A0A437AA44_9PEZI (Cell division cycle protein 123 n=1 Tax=Arthrobotrys flagrans TaxID=97331 RepID=A0A437AA44_9PEZI)

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-19
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   22 FPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCSLPGDILCLLKSSTFISHDLNHA 213
            FP +H  +  AIA LGGAV+PKLNWS PKDAA++ G +LKCS P D+  LLKSS FI+HDL HA
Sbjct:  103 FPEVHGAIIAAIAELGGAVYPKLNWSAPKDAAFMLGNTLKCSSPSDVYLLLKSSNFITHDLEHA 166          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19251.5700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE97_ECTSI8.700e-3791.04Cell division cycle 123 homolog (S. cerevisiae) n=... [more]
A0A835ZKE4_9STRA1.560e-2471.21D123-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S0KYW6_9STRA6.560e-2259.70Hypothetical protein (Fragment) n=1 Tax=Asterionel... [more]
A0A7S4V2C9_9STRA1.250e-2061.54Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A6U4E437_9STRA1.730e-2059.09Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A1S8VYJ1_9FUNG3.570e-2065.67Cell division cycle protein 123 n=1 Tax=Batrachoch... [more]
UPI001E8DE5883.910e-2065.15D123-domain-containing protein n=1 Tax=Emericellop... [more]
A0A4P9VWT4_9FUNG4.560e-2062.69Cell division cycle protein 123 (Fragment) n=1 Tax... [more]
A0A507C559_9FUNG4.770e-2065.67Cell division cycle protein 123 n=1 Tax=Synchytriu... [more]
A0A437AA44_9PEZI1.200e-1964.06Cell division cycle protein 123 n=1 Tax=Arthrobotr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19251contigL-elsbetiae_contig19251:481..1013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue1.9e-30
Seed eggNOG ortholog2880.D8LE97
Preferred nameCDC123
KEGG rclassRC00004,RC00037,RC02816
KEGG koko:K08765
KEGG ReactionR01923
KEGG Pathwayko00071,ko01212,ko03320,ko04152,ko04714,ko04920,ko04922,ko04931,map00071,map01212,map03320,map04152,map04714,map04920,map04922,map04931
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000287,GO:0001732,GO:0002181,GO:0002183,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0007049,GO:0007050,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0017076,GO:0019222,GO:0019538,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042127,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0045727,GO:0045786,GO:0045948,GO:0046872,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905143,GO:2000112
EggNOG free text desc.eukaryotic translation initiation factor 2 complex assembly
EggNOG OGsKOG2983@1,KOG2983@2759
EC2.3.1.21
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Exons2
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.538665-CDS-L-elsbetiae_contig19251:480..5881622815799.538665-CDS-L-elsbetiae_contig19251:480..588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19251 481..588 +
1691683110.4268322-CDS-L-elsbetiae_contig19251:480..5881691683110.4268322-CDS-L-elsbetiae_contig19251:480..588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19251 481..588 +
1622815799.5536413-CDS-L-elsbetiae_contig19251:905..10131622815799.5536413-CDS-L-elsbetiae_contig19251:905..1013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19251 906..1013 +
1691683110.4379985-CDS-L-elsbetiae_contig19251:905..10131691683110.4379985-CDS-L-elsbetiae_contig19251:905..1013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19251 906..1013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19251.5700.1prot_L-elsbetiae_contig19251.5700.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19251 481..1013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19251.5700.1

>prot_L-elsbetiae_contig19251.5700.1 ID=prot_L-elsbetiae_contig19251.5700.1|Name=mRNA_L-elsbetiae_contig19251.5700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MGDQQPEFPGLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCSL
PGDILCLLKSSTFISHDLNHA*
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mRNA from alignment at L-elsbetiae_contig19251:481..1013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19251.5700.1 ID=mRNA_L-elsbetiae_contig19251.5700.1|Name=mRNA_L-elsbetiae_contig19251.5700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=533bp|location=Sequence derived from alignment at L-elsbetiae_contig19251:481..1013+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGACCAACAGCCAGAGTTCCCGGGTCTGCACGCGCTGTTGAGTGA CGCGATCGCCTCTTTGGGAGGGGCTGTTTTCCCGAAGCTCAACTGGAGCT GCCCAAAGGTGCGAGTTGTTCCCCCGATACATATTGTCATGCAGACGAGC CTGAAAATTGCTGTGTATATATGTAGTGCATGCGCCGTGCTCTCTCTCTC TCTCTCTCTCTGTTTCTCTCTCGTTGGTAGTTCTTGCTTAGAAGCTTGTC TGCCGCTACAAGCAAGAGAACAGCTCTAAAGGACTTGCCGCACATTGCGG GGGCCTATCTTCCCGTGTGTCGGGCCCCTTGGAGGGTGGTTGGTGGAGGG GGCATACCCACACACCCACCAGGCTCTCAACGCCGCACGCGCTCGTCGTG CGTTTGATTGACTCTGACCGAAAAGGATGCTGCCTGGGTTAACGGAGGCA GCCTCAAGTGCTCGCTGCCAGGAGATATCCTCTGCCTCCTCAAGAGCTCC ACCTTCATTTCGCACGACCTCAACCACGCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19251:481..1013+

>mRNA_L-elsbetiae_contig19251.5700.1 ID=mRNA_L-elsbetiae_contig19251.5700.1|Name=mRNA_L-elsbetiae_contig19251.5700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig19251:481..1013+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGACCAACAGCCAGAGTTCCCGGGTCTGCACGCGCTGTTGAGTGA
CGCGATCGCCTCTTTGGGAGGGGCTGTTTTCCCGAAGCTCAACTGGAGCT
GCCCAAAGATGGGCGACCAACAGCCAGAGTTCCCGGGTCTGCACGCGCTG
TTGAGTGACGCGATCGCCTCTTTGGGAGGGGCTGTTTTCCCGAAGCTCAA
CTGGAGCTGCCCAAAGGATGCTGCCTGGGTTAACGGAGGCAGCCTCAAGT
GCTCGCTGCCAGGAGATATCCTCTGCCTCCTCAAGAGCTCCACCTTCATT
TCGCACGACCTCAACCACGCGTGAGATGCTGCCTGGGTTAACGGAGGCAG
CCTCAAGTGCTCGCTGCCAGGAGATATCCTCTGCCTCCTCAAGAGCTCCA
CCTTCATTTCGCACGACCTCAACCACGCGTGA
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