mRNA_L-elsbetiae_contig1925.5699.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1925.5699.1
Unique NamemRNA_L-elsbetiae_contig1925.5699.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: A0A2R7VV79_ONCFA (Uncharacterized protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7VV79_ONCFA)

HSP 1 Score: 73.2 bits (178), Expect = 3.560e-13
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:   13 LRAVIEHGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGWGRLDAVLALLKHGVDINSHNYKHQTP 279
            +RA IE GADL+  G+GG+TPLH+AA +    +I VL++AGV++++R   TG+TPLHIAA   G    ++ L+  G D  + N   +TP
Sbjct:  240 VRAAIERGADLKE-GLGGWTPLHWAAYWSSANVIRVLLEAGVSLQSRDSETGNTPLHIAAMR-GNDQVIVRLVAAGADTLAENNNMKTP 326
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.440e-12
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   31 HGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGWGRLDAVLALLKHGVDINSHNYKHQTPLH 285
            HG D+ A    G T L  A+ + +   IDVL +AG NIEA+  + G TPLH+A+   GRL A +ALL+HG  +   N   QTPLH
Sbjct:  546 HGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIEAQ--ANGSTPLHVASQE-GRLAAGIALLRHGASVGKKNAAAQTPLH 627
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: A0A2B7X141_9EURO (Uncharacterized protein n=1 Tax=Polytolypa hystricis UAMH7299 TaxID=1447883 RepID=A0A2B7X141_9EURO)

HSP 1 Score: 66.6 bits (161), Expect = 9.450e-11
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   10 ILRAVIEHGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAA-AGWGRLDAVLALLKHGVDINSHNYKHQTPLH 285
            ++R +IEHGA LEA        LH AA+Y  +++I +L+D G ++  R+     TPLH AA AG GR   ++ LL+ G DI + +    TPLH
Sbjct:  180 MIRLLIEHGAHLEALKAHRPNVLHEAAKYNNLDIIQLLIDEGFDVNGRMAGDDRTPLHAAASAGAGR--TIVFLLEVGADITARSKDGSTPLH 270
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: A0A0Q8H1Z5_9BURK (Uncharacterized protein n=2 Tax=unclassified Pelomonas TaxID=2638132 RepID=A0A0Q8H1Z5_9BURK)

HSP 1 Score: 62.8 bits (151), Expect = 1.280e-9
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    4 VEILRAVIEHGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGWGRLDAVLALLKHGVDINSHNYKHQTPLH 285
            V ++ A++ HGAD++AA  GG+TPLH AA       + +L+ AG  ++A     G TPLH++     R +   ALL  G DI + +   + PLH
Sbjct:   57 VPVMTALLAHGADVQAATPGGFTPLHMAAFSTCTPCVQLLLRAGARVQAASHKHGTTPLHMS-----RPETRAALLAGGADIAARDKLGRVPLH 145
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: A0A6P7GEU7_DIAVI (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7GEU7_DIAVI)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-9
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 NVEILRAVIEHGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGWGRLDAVLALLKHGVDINSHNYKHQTPL 282
            N E+++ +IE+GAD+      G T LH A+ Y   E++ +L+    N+EAR+   G TPLH+A     R   +  L++ G D+ + N   Q PL
Sbjct:  152 NTEVVKLLIEYGADVNKTNGDGCTVLHIASGYGEEEIVSLLLHKESNLEARINLCGSTPLHLAMRN--RSKVIDLLVQAGADVTARNRNGQRPL 243
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: A0A3B4AB98_9GOBI (Ankyrin repeat domain 10b n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4AB98_9GOBI)

HSP 1 Score: 60.8 bits (146), Expect = 1.930e-9
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:   64 GYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGWGRLDAVLALLKHGVDINSHNYKHQTPLH 285
            G+TP+H+AA + ++E +  LV+ G ++ A       TP HIAA G G   ++L LLK G DIN  +Y  +TP+H
Sbjct:   59 GWTPIHWAAHFGKLECVMRLVEVGCSVNAVTSRFAQTPTHIAAFG-GHPQSLLWLLKAGADINRQDYVGETPIH 131
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: W8B511_CERCA (Ankyrin-2 n=4 Tax=Ceratitis capitata TaxID=7213 RepID=W8B511_CERCA)

HSP 1 Score: 62.4 bits (150), Expect = 3.030e-9
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 NVEILRAVIEHGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGWGRLDAVLALLKHGVDINS 255
            N+E +RA++ HGA ++A    G TPLH A +Y   E++ +L+  G N   + I+TG+TPLH+A     +   V  +L+  V++N+
Sbjct:  176 NLECVRALLSHGASVDAVDSKGNTPLHLAVDYP--EVVRILLKHGANPNLKTINTGETPLHLAIKNCNKT-VVNIILQSAVNVNA 257
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.540e-9
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   13 LRAVIEHGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGW--GRLDAVLALLKHGVDINSHNYKHQTPL 282
            +  +++  AD E   VGG+TPLH AAE+ RV  +  L+    ++  R  +TGDTPLH A      G   ++  LL+ G D  + N + +TPL
Sbjct:  291 VHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPL 382
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: A0A2B7ZVL2_9EURO (Uncharacterized protein n=1 Tax=Emmonsia crescens TaxID=73230 RepID=A0A2B7ZVL2_9EURO)

HSP 1 Score: 61.2 bits (147), Expect = 7.690e-9
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 NVEILRAVIEHGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGWGRLDAVLALL-KHGVDINSHNYKHQTPL 282
            N  I++A++E+  ++      G TPLHFAA++  + LI++L+ AG +I A+++ TG+T LH AA   GR D ++ LL +HG +  ++++  ++PL
Sbjct:  268 NRPIVQAMVENFGEVSRPNSMGETPLHFAAKFSELWLIELLLMAGADISAKIL-TGETALHFAALA-GRDDPIIDLLIQHGANPYAYDWLGRSPL 360
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BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Match: A0A3B4AAA1_9GOBI (Ankyrin repeat domain 10b n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4AAA1_9GOBI)

HSP 1 Score: 60.8 bits (146), Expect = 8.760e-9
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:   64 GYTPLHFAAEYKRVELIDVLVDAGVNIEARVISTGDTPLHIAAAGWGRLDAVLALLKHGVDINSHNYKHQTPLH 285
            G+TP+H+AA + ++E +  LV+ G ++ A       TP HIAA G G   ++L LLK G DIN  +Y  +TP+H
Sbjct:   54 GWTPIHWAAHFGKLECVMRLVEVGCSVNAVTSRFAQTPTHIAAFG-GHPQSLLWLLKAGADINRQDYVGETPIH 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1925.5699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R7VV79_ONCFA3.560e-1344.94Uncharacterized protein n=1 Tax=Oncopeltus fasciat... [more]
A0A6H5JHY9_9PHAE4.440e-1245.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2B7X141_9EURO9.450e-1140.86Uncharacterized protein n=1 Tax=Polytolypa hystric... [more]
A0A0Q8H1Z5_9BURK1.280e-937.23Uncharacterized protein n=2 Tax=unclassified Pelom... [more]
A0A6P7GEU7_DIAVI1.700e-935.11serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A3B4AB98_9GOBI1.930e-941.89Ankyrin repeat domain 10b n=1 Tax=Periophthalmus m... [more]
W8B511_CERCA3.030e-936.47Ankyrin-2 n=4 Tax=Ceratitis capitata TaxID=7213 Re... [more]
D7FLL7_ECTSI5.540e-936.96Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A2B7ZVL2_9EURO7.690e-936.84Uncharacterized protein n=1 Tax=Emmonsia crescens ... [more]
A0A3B4AAA1_9GOBI8.760e-941.89Ankyrin repeat domain 10b n=1 Tax=Periophthalmus m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1925contigL-elsbetiae_contig1925:22190..22480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue5e-10
Seed eggNOG ortholog2880.D7FKL4
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.4971888-CDS-L-elsbetiae_contig1925:22189..224801622815799.4971888-CDS-L-elsbetiae_contig1925:22189..22480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1925 22190..22480 +
1691683110.4145079-CDS-L-elsbetiae_contig1925:22189..224801691683110.4145079-CDS-L-elsbetiae_contig1925:22189..22480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1925 22190..22480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1925.5699.1prot_L-elsbetiae_contig1925.5699.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1925 22190..22480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1925.5699.1

>prot_L-elsbetiae_contig1925.5699.1 ID=prot_L-elsbetiae_contig1925.5699.1|Name=mRNA_L-elsbetiae_contig1925.5699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
NVEILRAVIEHGADLEAAGVGGYTPLHFAAEYKRVELIDVLVDAGVNIEA
RVISTGDTPLHIAAAGWGRLDAVLALLKHGVDINSHNYKHQTPLHCC
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mRNA from alignment at L-elsbetiae_contig1925:22190..22480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1925.5699.1 ID=mRNA_L-elsbetiae_contig1925.5699.1|Name=mRNA_L-elsbetiae_contig1925.5699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig1925:22190..22480+ (Laminarionema elsbetiae ELsaHSoW15)
AATGTCGAGATCTTGAGGGCCGTAATCGAACACGGGGCGGATCTCGAGGC
TGCTGGCGTCGGCGGTTACACCCCCCTCCATTTTGCCGCCGAGTACAAAA
GGGTCGAGCTGATCGACGTGCTCGTAGATGCCGGGGTCAACATCGAAGCA
CGCGTAATCTCGACCGGCGATACGCCTCTTCATATTGCTGCTGCTGGATG
GGGCAGGCTCGATGCCGTGTTGGCCCTGTTGAAGCATGGGGTGGACATCA
ACTCCCACAACTACAAACACCAAACGCCTTTGCACTGTTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1925:22190..22480+

>mRNA_L-elsbetiae_contig1925.5699.1 ID=mRNA_L-elsbetiae_contig1925.5699.1|Name=mRNA_L-elsbetiae_contig1925.5699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig1925:22190..22480+ (Laminarionema elsbetiae ELsaHSoW15)
AATGTCGAGATCTTGAGGGCCGTAATCGAACACGGGGCGGATCTCGAGGC
TGCTGGCGTCGGCGGTTACACCCCCCTCCATTTTGCCGCCGAGTACAAAA
GGGTCGAGCTGATCGACGTGCTCGTAGATGCCGGGGTCAACATCGAAGCA
CGCGTAATCTCGACCGGCGATACGCCTCTTCATATTGCTGCTGCTGGATG
GGGCAGGCTCGATGCCGTGTTGGCCCTGTTGAAGCATGGGGTGGACATCA
ACTCCCACAACTACAAACACCAAACGCCTTTGCACTGTTGCAATGTCGAG
ATCTTGAGGGCCGTAATCGAACACGGGGCGGATCTCGAGGCTGCTGGCGT
CGGCGGTTACACCCCCCTCCATTTTGCCGCCGAGTACAAAAGGGTCGAGC
TGATCGACGTGCTCGTAGATGCCGGGGTCAACATCGAAGCACGCGTAATC
TCGACCGGCGATACGCCTCTTCATATTGCTGCTGCTGGATGGGGCAGGCT
CGATGCCGTGTTGGCCCTGTTGAAGCATGGGGTGGACATCAACTCCCACA
ACTACAAACACCAAACGCCTTTGCACTGTTGC
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