mRNA_L-elsbetiae_contig19249.5695.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19249.5695.1
Unique NamemRNA_L-elsbetiae_contig19249.5695.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19249.5695.1 vs. uniprot
Match: A0A6H5K7X0_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X0_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 1.280e-88
Identity = 254/502 (50.60%), Postives = 284/502 (56.57%), Query Frame = 1 
Query:    4 ALVHTRQAYPPKSMPCTLLLASDPLPGGGMKAILHPLERGSRDSLTPADGDPASPAAAAXXXXXXXXXVEEEVGEDTGPLVGLSVVLDCRVACTVELLWDVDLTLLGKEMGLHPKLHLLPASTGGDSSSSRSNVINVIGGSGTSAGAAAPADRSNSSRHSLVGDLWASVVSASGALGRAGSGRWGGRIAAGAPPDSSA-PSARVRQGSGWREGGLAAIV----------GDEDEEMGRRRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-------IGS----RSWAASLGLRKSSVLNGAHGGSGAEDDDENSAGVGSTVGQILGIGGRGRGASVPGAR-----MGLCGKRTVPRALSAGGSRVFETLPGESYFRGRPRSGAWSVGVAASGXXXXXXXXXX--------------------------------GRRRWPRVEDSVRAGRCSLAVVIRPAAGAETGDWAGWRHRPTHRVTRQV 1332
            ALVHTRQAYPPK+MPC+LL+ASDP   GG+KAILHP  R S D++      P       XXXXXXXXX       + GPLVG+SVVLDCR+ACTVELLWDVDLTLLG+EMGLHPKL    A+    +SSS ++  +V GG G S            S  SL G+ WAS VSAS  L RAG  RWG R+A GAPP+SS+ PS                             + DEEMG R  G    XXXXXXXXXXXXXXXXXXXXXXXXX                        +GS    RSWAASLGLRKSSV N     +G ED  + +AGVG TVGQ LG+GG                MGLCGKRTVPRALSAG  RVF TLPGESYFRGR + G W+ G  A+                                           G R WPRV D VRAGRCSLA+VIRPAAG ETGDW GWRHRPTHRVTRQ+
Sbjct:   84 ALVHTRQAYPPKTMPCSLLVASDP---GGVKAILHP--RDSDDNIPVDPRPPXXXXXXXXXXXXXXXXGALGARAEAGPLVGVSVVLDCRIACTVELLWDVDLTLLGREMGLHPKLRT--AAGAAAASSSPTDRFDVGGGGGLS------------SLSSLPGNAWASAVSASRRLFRAGRERWGSRVA-GAPPESSSRPSXXXXXXXXXXXXXXXXXXXXXXXXXYPSNNVDEEMGGRGVGGALGXXXXXXXXXXXXXXXXXXXXXXXXXGASAAEAVLASLDGPGARRAGTGNVGSGGAGRSWAASLGLRKSSVFN-----AGGEDGSD-TAGVGWTVGQALGLGGXXXXXXXXXXXXXXGIMGLCGKRTVPRALSAGRGRVFTTLPGESYFRGRQQGGEWNAGATATSAAGAAKVGGGRGGGVDVRXXXXXXXXXXXXXXXXGAGERPAAGGRDWPRVGDPVRAGRCSLAIVIRPAAGEETGDWVGWRHRPTHRVTRQI 559
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BLAST of mRNA_L-elsbetiae_contig19249.5695.1 vs. uniprot
Match: D7FQX1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX1_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 2.140e-88
Identity = 255/528 (48.30%), Postives = 273/528 (51.70%), Query Frame = 1 
Query:    4 ALVHTRQAYPPKSMPCTLLLASDPLPGGGMKAILHPLERGSRDSLTPADGDPASPAAAAXXXXXXXXXVEEEVGEDTGPLVGLSVVLDCRVACTVELLWDVDLTLLGKEMGLHPKLHLLPASTGGDSSSSRSNVINVIGGSGTSAGAAAPADR------------------------SNSSRHSLVGDLWASVVSASGALGRAGSGRWGGRIAAGAPPDSSA-------PSARVRQGSGWREGGLAAIVG----DEDEEMGRRRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPI------------GSRSWAASLGLRKSSVLNGAHGGSGAEDDDENSAGVGSTVGQILGIGGRGRGASV----PGARM-GLCGKRTVPRALSAGGSRVFETLPGESYFRGRPRSGAWSVGVAASGXXXXXXXXXX---------------------------------GRRRWPRVEDSVRAGRCSLAVVIRPAAGAETGDWAGWRHRPTHRVTRQV 1332
            ALVHTRQAYPPK+MPC+LL+ASDP    G+KAILHP + G    + P            XXXXX       E G    PLVG+SVVLDCRVACTVELLWDVDLTLLG+EMGLHPKLHLLPASTG   S                                                 S SS  SL G+ WAS VSAS  L RAG  RWG R+A GAPPDSS+       P                   G    D DEEMG R  G    XXXXXXXXXXXXXXXXXXXXXX                                   RSWAASLGLRKSSV N A GG G++     +AG G TVGQ LG              PG  M GLCGKRTVPRALSAGG RVF TLPGESYFRGR +SG W+ G  A+         XX                                 G R WPRV DSVRAGRCSLA+VIRPAAG ETGDWAGWRHRPTHRVTRQV
Sbjct:   84 ALVHTRQAYPPKTMPCSLLVASDP---DGVKAILHPRDSGDDIQVDPPXXXXXXXXXXXXXXXXGALGARAEAG----PLVGVSVVLDCRVACTVELLWDVDLTLLGREMGLHPKLHLLPASTGAGGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSSLSSLPGNAWASAVSASRRLFRAGRERWGSRVA-GAPPDSSSRPLGSRGPGRXXXXXXXXXXXXXXXXSGYPSNDVDEEMGGRGVGGALGXXXXXXXXXXXXXXXXXXXXXXDDNLGATAAEAVLASLDGQGARRAGTGNGGSGGAGRSWAASLGLRKSSVFN-AGGGDGSD-----AAGAGGTVGQALGFXXXXXXXXXXXXXPGVGMIGLCGKRTVPRALSAGGGRVFTTLPGESYFRGRQQSGEWNAGATATSAAGAAKTGXXXXXXVDGRATSAVSAFVXXXXXXXXXXERRPAAGGRDWPRVGDSVRAGRCSLAIVIRPAAGGETGDWAGWRHRPTHRVTRQV 597
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19249.5695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7X0_9PHAE1.280e-8850.60RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
D7FQX1_ECTSI2.140e-8848.30RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19249contigL-elsbetiae_contig19249:120..1864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.4
Seed ortholog evalue1.4e-78
Seed eggNOG ortholog2880.D7FQX1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG4265@1,KOG4265@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-02_003210.1
Exons3
Model size1332
Cds size1332
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19249.5695.1prot_L-elsbetiae_contig19249.5695.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19249 120..1864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.280749-CDS-L-elsbetiae_contig19249:119..2681622815799.280749-CDS-L-elsbetiae_contig19249:119..268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19249 120..268 +
1691683110.2839146-CDS-L-elsbetiae_contig19249:119..2681691683110.2839146-CDS-L-elsbetiae_contig19249:119..268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19249 120..268 +
1622815799.297069-CDS-L-elsbetiae_contig19249:331..5321622815799.297069-CDS-L-elsbetiae_contig19249:331..532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19249 332..532 +
1691683110.2940173-CDS-L-elsbetiae_contig19249:331..5321691683110.2940173-CDS-L-elsbetiae_contig19249:331..532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19249 332..532 +
1622815799.3113317-CDS-L-elsbetiae_contig19249:882..18641622815799.3113317-CDS-L-elsbetiae_contig19249:882..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19249 883..1864 +
1691683110.3036447-CDS-L-elsbetiae_contig19249:882..18641691683110.3036447-CDS-L-elsbetiae_contig19249:882..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19249 883..1864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19249.5695.1

>prot_L-elsbetiae_contig19249.5695.1 ID=prot_L-elsbetiae_contig19249.5695.1|Name=mRNA_L-elsbetiae_contig19249.5695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=444bp
QALVHTRQAYPPKSMPCTLLLASDPLPGGGMKAILHPLERGSRDSLTPAD
GDPASPAAAATAAGAAAAAVEEEVGEDTGPLVGLSVVLDCRVACTVELLW
DVDLTLLGKEMGLHPKLHLLPASTGGDSSSSRSNVINVIGGSGTSAGAAA
PADRSNSSRHSLVGDLWASVVSASGALGRAGSGRWGGRIAAGAPPDSSAP
SARVRQGSGWREGGLAAIVGDEDEEMGRRRGGSGTAAAAIAVTAASGGGV
NGNGNGSAGTAGAGAATRRGGGGGGGGPIGSRSWAASLGLRKSSVLNGAH
GGSGAEDDDENSAGVGSTVGQILGIGGRGRGASVPGARMGLCGKRTVPRA
LSAGGSRVFETLPGESYFRGRPRSGAWSVGVAASGGAAAGGGPTGGRRRW
PRVEDSVRAGRCSLAVVIRPAAGAETGDWAGWRHRPTHRVTRQV
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mRNA from alignment at L-elsbetiae_contig19249:120..1864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19249.5695.1 ID=mRNA_L-elsbetiae_contig19249.5695.1|Name=mRNA_L-elsbetiae_contig19249.5695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1745bp|location=Sequence derived from alignment at L-elsbetiae_contig19249:120..1864+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCCTGGTGCACACCAGGCAGGCTTACCCGCCGAAGTCCATGCCTTG
CACGCTCCTCCTCGCGAGCGACCCCCTCCCGGGCGGCGGCATGAAGGCCA
TCCTTCACCCGCTGGAGAGGGGGAGCCGAGACAGCCTGACCCCGGCGGAG
TCCGCCGCGAGCACCGCCGCCGGCGGCAGCGGTGGCGATGGCGGTGGTGG
TGGTGGTGGTAGTGGTGATCCGGCTTCCCCTGCCGCGGCCGCCACTGCCG
CGGGGGCGGCGGCGGCGGCGGTGGAGGAGGAGGTGGGGGAGGACACGGGG
CCGCTGGTGGGGTTGTCGGTGGTGCTGGACTGCCGGGTGGCGTGCACGGT
GGAGCTGCTGTGGGACGTTGACCTGACGTTGCTTGGCAAGGAGATGGGTC
TTCACCCCAAGCTGTGAGTTGTTGCTGTTGTAATTTACTGCTGGGAAGTG
TGTCCGTTGCTTGTTGTTTCTTTCTCGCCCGCGCGTGTGTGTGTGTGTCG
TAGTGTGGCGGGAAGGAGAGGCATTGATTGCCCCGCGCGGCTTGTTTACT
GCTTCCTTGCTGTCCCGTGGTCCTCGTGGGAGGATGGTGGATTCGATCAC
GGGGGTGCTCCAGCGGCTTAACCAATTACCGGCCTCTTGTCAGCTGTTGA
TGCCGTTATCGTCACCACGATTCCTTCGGGCGTTAGATATAGGAATGGCA
AACAGAACCGGGTCCTGCACCTTTGTCACCCTCAACCCCCCCCCCTACAC
CGCCGGGCCCCAGGCACCTCCTGCCGGCTTCAACCGGGGGAGACAGCAGT
AGTAGCCGGAGCAACGTCATTAACGTCATCGGTGGCAGCGGCACAAGCGC
CGGGGCCGCCGCCCCGGCCGACCGCTCCAACAGCAGTCGCCACTCCCTCG
TCGGCGACCTGTGGGCCTCGGTGGTGTCCGCGTCGGGGGCGCTAGGCCGC
GCCGGGAGCGGGAGGTGGGGGGGGCGGATCGCCGCCGGGGCTCCTCCGGA
CTCGTCCGCTCCCTCCGCCCGGGTGCGGCAGGGGTCGGGTTGGAGGGAGG
GCGGCCTCGCTGCCATCGTCGGCGACGAGGATGAGGAAATGGGCCGACGA
AGAGGAGGCTCGGGAACGGCAGCGGCAGCGATAGCAGTGACAGCGGCGAG
CGGCGGGGGCGTGAACGGCAACGGCAACGGCTCCGCCGGCACGGCGGGGG
CAGGGGCGGCGACGAGGCGAGGCGGCGGTGGCGGCGGCGGCGGTCCGATA
GGCAGCCGTTCTTGGGCGGCCTCCCTGGGCCTCCGGAAGTCGTCCGTGCT
CAACGGTGCCCACGGCGGGAGCGGGGCCGAGGACGACGACGAGAACTCGG
CGGGGGTCGGGTCTACGGTCGGGCAGATACTGGGCATCGGCGGCAGGGGG
CGGGGAGCGAGCGTCCCGGGGGCGAGGATGGGCCTCTGCGGGAAGCGGAC
CGTGCCGCGGGCGCTGTCCGCCGGCGGCAGCCGGGTTTTCGAGACGCTGC
CGGGCGAGAGCTACTTCCGGGGGCGCCCGCGGAGCGGCGCGTGGTCGGTG
GGGGTGGCCGCGTCGGGGGGCGCCGCTGCTGGCGGTGGCCCGACAGGGGG
GAGGCGGAGGTGGCCGAGGGTTGAGGACTCCGTCCGCGCGGGGCGCTGCT
CCCTGGCGGTTGTGATAAGGCCGGCGGCGGGCGCGGAGACTGGGGACTGG
GCCGGGTGGCGGCATCGGCCGACTCACCGCGTAACTCGCCAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19249:120..1864+

>mRNA_L-elsbetiae_contig19249.5695.1 ID=mRNA_L-elsbetiae_contig19249.5695.1|Name=mRNA_L-elsbetiae_contig19249.5695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2664bp|location=Sequence derived from alignment at L-elsbetiae_contig19249:120..1864+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCCTGGTGCACACCAGGCAGGCTTACCCGCCGAAGTCCATGCCTTG
CACGCTCCTCCTCGCGAGCGACCCCCTCCCGGGCGGCGGCATGAAGGCCA
TCCTTCACCCGCTGGAGAGGGGGAGCCGAGACAGCCTGACCCCGGCGGAC
AGGCCCTGGTGCACACCAGGCAGGCTTACCCGCCGAAGTCCATGCCTTGC
ACGCTCCTCCTCGCGAGCGACCCCCTCCCGGGCGGCGGCATGAAGGCCAT
CCTTCACCCGCTGGAGAGGGGGAGCCGAGACAGCCTGACCCCGGCGGATG
GTGATCCGGCTTCCCCTGCCGCGGCCGCCACTGCCGCGGGGGCGGCGGCG
GCGGCGGTGGAGGAGGAGGTGGGGGAGGACACGGGGCCGCTGGTGGGGTT
GTCGGTGGTGCTGGACTGCCGGGTGGCGTGCACGGTGGAGCTGCTGTGGG
ACGTTGACCTGACGTTGCTTGGCAAGGAGATGGGTCTTCACCCCAAGCTT
GGTGATCCGGCTTCCCCTGCCGCGGCCGCCACTGCCGCGGGGGCGGCGGC
GGCGGCGGTGGAGGAGGAGGTGGGGGAGGACACGGGGCCGCTGGTGGGGT
TGTCGGTGGTGCTGGACTGCCGGGTGGCGTGCACGGTGGAGCTGCTGTGG
GACGTTGACCTGACGTTGCTTGGCAAGGAGATGGGTCTTCACCCCAAGCT
GCACCTCCTGCCGGCTTCAACCGGGGGAGACAGCAGTAGTAGCCGGAGCA
ACGTCATTAACGTCATCGGTGGCAGCGGCACAAGCGCCGGGGCCGCCGCC
CCGGCCGACCGCTCCAACAGCAGTCGCCACTCCCTCGTCGGCGACCTGTG
GGCCTCGGTGGTGTCCGCGTCGGGGGCGCTAGGCCGCGCCGGGAGCGGGA
GGTGGGGGGGGCGGATCGCCGCCGGGGCTCCTCCGGACTCGTCCGCTCCC
TCCGCCCGGGTGCGGCAGGGGTCGGGTTGGAGGGAGGGCGGCCTCGCTGC
CATCGTCGGCGACGAGGATGAGGAAATGGGCCGACGAAGAGGAGGCTCGG
GAACGGCAGCGGCAGCGATAGCAGTGACAGCGGCGAGCGGCGGGGGCGTG
AACGGCAACGGCAACGGCTCCGCCGGCACGGCGGGGGCAGGGGCGGCGAC
GAGGCGAGGCGGCGGTGGCGGCGGCGGCGGTCCGATAGGCAGCCGTTCTT
GGGCGGCCTCCCTGGGCCTCCGGAAGTCGTCCGTGCTCAACGGTGCCCAC
GGCGGGAGCGGGGCCGAGGACGACGACGAGAACTCGGCGGGGGTCGGGTC
TACGGTCGGGCAGATACTGGGCATCGGCGGCAGGGGGCGGGGAGCGAGCG
TCCCGGGGGCGAGGATGGGCCTCTGCGGGAAGCGGACCGTGCCGCGGGCG
CTGTCCGCCGGCGGCAGCCGGGTTTTCGAGACGCTGCCGGGCGAGAGCTA
CTTCCGGGGGCGCCCGCGGAGCGGCGCGTGGTCGGTGGGGGTGGCCGCGT
CGGGGGGCGCCGCTGCTGGCGGTGGCCCGACAGGGGGGAGGCGGAGGTGG
CCGAGGGTTGAGGACTCCGTCCGCGCGGGGCGCTGCTCCCTGGCGGTTGT
GATAAGGCCGGCGGCGGGCGCGGAGACTGGGGACTGGGCCGGGTGGCGGC
ATCGGCCGACTCACCGCGTAACTCGCCAGGTGGCACCTCCTGCCGGCTTC
AACCGGGGGAGACAGCAGTAGTAGCCGGAGCAACGTCATTAACGTCATCG
GTGGCAGCGGCACAAGCGCCGGGGCCGCCGCCCCGGCCGACCGCTCCAAC
AGCAGTCGCCACTCCCTCGTCGGCGACCTGTGGGCCTCGGTGGTGTCCGC
GTCGGGGGCGCTAGGCCGCGCCGGGAGCGGGAGGTGGGGGGGGCGGATCG
CCGCCGGGGCTCCTCCGGACTCGTCCGCTCCCTCCGCCCGGGTGCGGCAG
GGGTCGGGTTGGAGGGAGGGCGGCCTCGCTGCCATCGTCGGCGACGAGGA
TGAGGAAATGGGCCGACGAAGAGGAGGCTCGGGAACGGCAGCGGCAGCGA
TAGCAGTGACAGCGGCGAGCGGCGGGGGCGTGAACGGCAACGGCAACGGC
TCCGCCGGCACGGCGGGGGCAGGGGCGGCGACGAGGCGAGGCGGCGGTGG
CGGCGGCGGCGGTCCGATAGGCAGCCGTTCTTGGGCGGCCTCCCTGGGCC
TCCGGAAGTCGTCCGTGCTCAACGGTGCCCACGGCGGGAGCGGGGCCGAG
GACGACGACGAGAACTCGGCGGGGGTCGGGTCTACGGTCGGGCAGATACT
GGGCATCGGCGGCAGGGGGCGGGGAGCGAGCGTCCCGGGGGCGAGGATGG
GCCTCTGCGGGAAGCGGACCGTGCCGCGGGCGCTGTCCGCCGGCGGCAGC
CGGGTTTTCGAGACGCTGCCGGGCGAGAGCTACTTCCGGGGGCGCCCGCG
GAGCGGCGCGTGGTCGGTGGGGGTGGCCGCGTCGGGGGGCGCCGCTGCTG
GCGGTGGCCCGACAGGGGGGAGGCGGAGGTGGCCGAGGGTTGAGGACTCC
GTCCGCGCGGGGCGCTGCTCCCTGGCGGTTGTGATAAGGCCGGCGGCGGG
CGCGGAGACTGGGGACTGGGCCGGGTGGCGGCATCGGCCGACTCACCGCG
TAACTCGCCAGGTG
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