mRNA_L-elsbetiae_contig1923.5687.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1923.5687.1
Unique NamemRNA_L-elsbetiae_contig1923.5687.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1923.5687.1 vs. uniprot
Match: D7G7Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.540e-15
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:  359 QSSLAARVQQINFTISELQPRSAALRDPQARKEVEMRLKDLARQGMFITEAARELDEILTMRGGA 553
            Q+ LAARVQ+IN TI EL PR+AA++DP+AR+EVE+RLK LAR G+F+TE  RELD IL  RG A
Sbjct:   41 QAHLAARVQRINATIEELYPRTAAVKDPEARREVELRLKGLARHGLFVTETWRELDAILAERGRA 105
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1923.5687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z5_ECTSI1.540e-1566.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1923contigL-elsbetiae_contig1923:11671..15521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009560.1
Exons2
Model size2274
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1923.5687.1prot_L-elsbetiae_contig1923.5687.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1923 11891..13806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.6409745-UTR-L-elsbetiae_contig1923:11670..118901622815798.6409745-UTR-L-elsbetiae_contig1923:11670..11890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1923 11671..11890 +
1691683109.9459984-UTR-L-elsbetiae_contig1923:11670..118901691683109.9459984-UTR-L-elsbetiae_contig1923:11670..11890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1923 11671..11890 +
1622815798.6940358-UTR-L-elsbetiae_contig1923:13806..155211622815798.6940358-UTR-L-elsbetiae_contig1923:13806..15521Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1923 13807..15521 +
1691683109.9794822-UTR-L-elsbetiae_contig1923:13806..155211691683109.9794822-UTR-L-elsbetiae_contig1923:13806..15521Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1923 13807..15521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.6614633-CDS-L-elsbetiae_contig1923:11890..120751622815798.6614633-CDS-L-elsbetiae_contig1923:11890..12075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1923 11891..12075 +
1691683109.956619-CDS-L-elsbetiae_contig1923:11890..120751691683109.956619-CDS-L-elsbetiae_contig1923:11890..12075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1923 11891..12075 +
1622815798.6818578-CDS-L-elsbetiae_contig1923:13652..138061622815798.6818578-CDS-L-elsbetiae_contig1923:13652..13806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1923 13653..13806 +
1691683109.9692261-CDS-L-elsbetiae_contig1923:13652..138061691683109.9692261-CDS-L-elsbetiae_contig1923:13652..13806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1923 13653..13806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1923.5687.1

>prot_L-elsbetiae_contig1923.5687.1 ID=prot_L-elsbetiae_contig1923.5687.1|Name=mRNA_L-elsbetiae_contig1923.5687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MSVSNVAVKRALRQGVRTTGLQARAGGEGQHQQHEQRAQRAQNAILQSSL
AARVQQINFTISELQPRSAALRDPQARKEVEMRLKDLARQGMFITEAARE
LDEILTMRGGAS*
back to top

mRNA from alignment at L-elsbetiae_contig1923:11671..15521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1923.5687.1 ID=mRNA_L-elsbetiae_contig1923.5687.1|Name=mRNA_L-elsbetiae_contig1923.5687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3851bp|location=Sequence derived from alignment at L-elsbetiae_contig1923:11671..15521+ (Laminarionema elsbetiae ELsaHSoW15)
GCTATGAGAAGAGGACATCCAACGGTCAAATTGTGTCAACGATCACTTTT
GGGGGCGCCGCAGCCAGTAATAGACACGTCACGTGGGTTCAGCGTTCAGC
GTTCGCCGGTGATCATTTTACTTTGTCGCCACCCTCCACACTCCAGCCTC
GCCCACTCCTTCTTGCCCAGTGACCTTCAAAAACCCTTCGCGTTGACACT
ATACACTTTCCGGAAAGACCATGTCCGTGAGTAATGTGGCTGTTAAAAGG
GCACTTAGGCAGGGAGTGCGGACAACGGGCCTGCAAGCTCGTGCCGGCGG
GGAAGGCCAACACCAGCAGCATGAGCAGCGAGCACAGCGCGCGCAGAACG
CCATCCTCCAGTCTTCCCTCGCCGCCAGGGTTCAGCAAATTAACTTCACC
ATTAGGTGAGTTCCGTGTCTGTTCTCAAGCGAGAGAGCGAGAGAAGAAGA
GAAGTTGAGTTGAGCCTACGGCATCGAATACTCTTCTGTGAACGCATGAT
GACTCTTGAAGCGGAACATCGAGGACCTACGCGACACCAGATCGCCGAGG
CCTTACCTTACTTCAATTCCGCCCCCCTACCCCTCCCGTTCTCCGCTCCC
CACCCTTTACTTTCCTCGTGAGCTTTCGCTGTGGAACGGGGCTTTATCGC
CTGCGAGTGGTGTTGTGTTTTTTGCCGGAAGCAACCCAGAGACGGACAGC
TGTCCGGCCATTTCCGGGTTGTTGTCACCAGAAAGGTTCATCCGCGCCCC
CACAAAATCACAGCTGTCTTGGACACTGTTACACCGCCTCCCGTGCTCTC
CTGAGGGTGATATACAGGAGATATTAATAGAGAGCCACATTGTGCTGGGT
TCAGAAGCACCCCTCGTCGATGAAAACGTTATTGGTGTGCTTCTTTACAC
AGGACCCCAACAAATTGCGCGAAACTCGTCTTGCCTGCGAATCATGTTTT
TTTTCCAGTTTTCCCGGCAAGCGCCGAGTGGCAACGGCCAGGATTGTACC
CAAAACAAGAGGTATCAGATCAAGTAAGGCACACACACACACGTCATCGC
ACGCTCCAAAACACATCTCTGACCTGTCTGGTCGACGGTCGAGTAGGTTT
AGGGCCTTGGACTACACTGGCTTGCTGACTGCTAATATACCTACATATAC
AATATACGATGTGAGAACAACATATCTGCGACTGAGGAACAACGACGGAC
TGCTGTATTGTAGTCTAGTATTAGTCTCGTGTAGTCAAGGGTGGAAATCA
CAAATCGTTGAATTACCATCACGTGGGCCTCACGTGGGCCTCTCGAAACA
TTTAGATTGCAGGCAGCGATAGTTGCGCTGCCGTGTGCTTCCCCGAGCGC
TCCTGCGGATGGACTTTTCCCGGACGACTTTTCTACATGTGATCCTTAAT
TTAAATTGTCTCTTTCTTGCGCCGCGTAAATAGAAGACGCGGTGCAAAGC
CGCATTTTCCCCTCCTCAAAACACACGGCAGAGGGACTTCTAAATCCTCC
TGGCGTTAGAAAATCACGGCAAGCAAATAGCAACAGGGCGGAGGTCGGGC
GAAATAAAATGTAAACCTGCGTACACCCTGCTTTGTTGCCCCGGCTGATA
TGACACATATGTATCATTGGTTAACTTACCCCCCCGCCCTCTCAACCACG
CATTCAGCAATCCACACGTTCCAGGACCTCCCCAACAAGCGGCATGTTGT
ATACCTCAAGTTTTGTTTTTTTTCTTCTTCGCATTTCCCATTTGTTTCCA
GTGCTCGGCCGGCTCGTTGCCACTTGAAATTGTCTTCACTACGCTCCATC
CCACGGAGCTTGTTCCAGATCGGACCCTGCTGGACGCTAGCAGAGGTTGC
CTGATGGTGTTCGATGCCCCCCCCCCCCCGCCCGCGGATTGACGGCATAA
CGTCCAAAGCGCCCCCACGTAAATACCCCCCTAACCCCAACTCAAACCAT
TGTTGTATGTGTGTGTGTGTTTTTTTTTGCAGCGAACTTCAGCCAAGGTC
GGCCGCGCTCAGGGACCCGCAGGCCAGGAAAGAAGTGGAAATGCGCCTGA
AGGACCTGGCACGCCAGGGAATGTTCATTACGGAAGCTGCAAGAGAACTC
GACGAAATTCTCACGATGCGCGGGGGCGCGTCGTGAGGGTAACTGTCGTC
ATCTACGGTTGGTTGCAGCGGCTTAATTCGCCTTTGGCAAACCCAAGATG
TGGACTTGGTGTTACCCTTGCTCAGAGTTTTGTCTTTCTCGTGAGAAGTG
GTCGTTGAGGTGTACCCTCCCTCCCCGTGTGCGAGTAGGAGCGTCGATTA
TATGGCGGCGCGCAAACGTCGAGGTACAGGCTGTCAATAGGGACAAAGCC
ACCGAATGCGACTCCTCATGATGTGTCGAGCTACTGCTGGCAGACAAAAC
AACAGCAGCGTGGCGGCGCCTTTATTGCAGCATTCCGAGAGGCAGGGTTA
GGGGGTTGAGAACGCTCGCCGTGTGTTGGTGTTGACGTCGATCGTATCAG
GGAGGCATGAGTCGGTGGCCCGTTTTCGAACAACCCGAGATGATGCGTAA
TATAGGCCAATAAGAGGTTGAACAACCAGTGAGATGGCGGCTTGGCAATT
TGCAAAAAAGTAAATAAAAAATGCGGGTCAAACATGTGGATGAGTACATC
ATGCCTGGTGAGGGGTAAGAGTTGGGGTGGACGCGCGAGCTTGAGCCCGG
AAATGAAGGCTTTCCCGCTAGAGGCTTGCTGCGTGTAGAAAAAATGATGA
AATAGGTAGGGTTACTGGGGTAGTGGACGCGCGGAAACTTGGGGCATGAT
TTTTGCACGTTTTCATGCGCGGATACTCTGATTTTTGTAGGTCATACATA
TTGATTTCTATGGGGTGTACATATGTATGATGACGGTTGGAGACGCTCGC
TTAACCGCCGTAAGGCAAGCTTGGTAGCGGTAGACAACGCGCGTGGAACT
GGGACAACGGGTGTACGTGGCGCGGATTCGGTTCTTGTAGGATACATCAA
CGAGAGAAGTGGGTGTATGATGACGGATCGAGAGACTTGGCTATGCTGTA
TTGTAGGGTATCTAGCCAACTAGGGTAGAGAACGCGCTTGGAAGATGATG
GGCGTGTATGTGAGGAGACGGGGTGTATGATGACGGATTCGGCCACGTGT
GGCTGCGTGTGTCTTTGCCTGTGAGAAGTACGGGGACTGAGCGCCCGTGG
CGTAGTGGCGAGCCTCCTCTGAGCGTGTGGATTTTGTAGTACATGTACGT
ACATACGTAGGATGTATGTGTTCGTAGGATGTAGTGTTCCAACTAGCCGT
GGTCCTGTAATAAGTGTGTGTGCAACAATCGGGGCAACTCGTATCTGGAA
GGGTGTGTGAGTTCCGTGATTTTTTTCCCGAAGAAGCGAAACTACGTGTC
TCCTTGTCCGTGGTCTGTGCCACCCTGCTTGCGGTGAAAAGTATAAGTAT
TCCTTCTCTTTTTGCAAGGTTGTGTCCCTTGCTCTTGGCCTTTAATTTAA
GTACAAGGACAAATGGTTGTGAAGGCGATTGCATGCGTAGACAACCATTG
CATGAAATGTCCGGTTAATATTTTCAAGGGCAGTGGTGTTTCAGTAGTCT
ATACTGCTTTTTTAGGGTAGGTTACTATCCTGTTACCACGGGGATCGACC
GCGTCAGTGTTGGATTGGTACGAACTCATGGAGGTGTCCTGGTGTCCTGA
ATAGCGAGATCGAAACGGTTGTTAATGTAAAGGAAACAACAACAATGGTT
GGGAGTACAAATTCTTGGAGGGCAAAACTTGGCGCCCGGATGCTGTCATT
CCACAGCCTAGACACGTTTTCATGAAGTGGACTCGGTTCGGTCTAGATTT
A
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1923:11671..15521+

>mRNA_L-elsbetiae_contig1923.5687.1 ID=mRNA_L-elsbetiae_contig1923.5687.1|Name=mRNA_L-elsbetiae_contig1923.5687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig1923:11671..15521+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGTGAGTAATGTGGCTGTTAAAAGGGCACTTAGGCAGGGAGTGCG
GACAACGGGCCTGCAAGCTCGTGCCGGCGGGGAAGGCCAACACCAGCAGC
ATGAGCAGCGAGCACAGCGCGCGCAGAACGCCATCCTCCAGTCTTCCCTC
GCCGCCAGGGTTCAGCAAATTAACTTCACCATTAGATGTCCGTGAGTAAT
GTGGCTGTTAAAAGGGCACTTAGGCAGGGAGTGCGGACAACGGGCCTGCA
AGCTCGTGCCGGCGGGGAAGGCCAACACCAGCAGCATGAGCAGCGAGCAC
AGCGCGCGCAGAACGCCATCCTCCAGTCTTCCCTCGCCGCCAGGGTTCAG
CAAATTAACTTCACCATTAGCGAACTTCAGCCAAGGTCGGCCGCGCTCAG
GGACCCGCAGGCCAGGAAAGAAGTGGAAATGCGCCTGAAGGACCTGGCAC
GCCAGGGAATGTTCATTACGGAAGCTGCAAGAGAACTCGACGAAATTCTC
ACGATGCGCGGGGGCGCGTCGTGACGAACTTCAGCCAAGGTCGGCCGCGC
TCAGGGACCCGCAGGCCAGGAAAGAAGTGGAAATGCGCCTGAAGGACCTG
GCACGCCAGGGAATGTTCATTACGGAAGCTGCAAGAGAACTCGACGAAAT
TCTCACGATGCGCGGGGGCGCGTCGTGA
back to top