mRNA_L-elsbetiae_contig19212.5680.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A6H5KR09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR09_9PHAE) HSP 1 Score: 120 bits (301), Expect = 7.470e-30 Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 3 Query: 3 VITLMYLQISLSAFLTIFAARSTTWAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDGGTAIFVWVYCLVGFGLQDSAKVAMIGLMKRHNWFNYNHVTSH 323 V+T MYL+ISLS L+++ AR TW KAPGK L+ AFV A+G+STI+A+TWPL +GAS ID A VWVYCLV F +QD+AKVA+I LM+R N F+ H TSH Sbjct: 5 VVTGMYLKISLSDSLSLYVARFPTWFFFAKAPGKRLIAAFVFAMGLSTILAVTWPLGDGASTIDARMAAVVWVYCLVWFLVQDAAKVAIIRLMERSNQFDMGHTTSH 111
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A836CBQ8_9STRA (Plasma membrane ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ8_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.410e-23 Identity = 59/126 (46.83%), Postives = 84/126 (66.67%), Query Frame = 3 Query: 3 VITLMYLQISLSAFLTIFAARSTT--WAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDGGTAIFVWVYCLVGFGLQDSAKVAMIGLMKRHNWFNYNHVTSHVHLYPAAHYVESTPDQK 374 ++T+MYL++SLS FLT+FA+R+ W V PGK+LM AF+VAVG+ST +A TWP EGA +I+ VW+YCL+ F +QD KV + LM ++N N N TSHV Y +H+++S +K Sbjct: 775 IVTMMYLKVSLSDFLTLFASRNRGPFWEV---KPGKLLMCAFLVAVGLSTTIACTWPFGEGAEKINSQICGLVWIYCLIWFLIQDLGKVLLYKLMFKYNILNINRQTSHVQNYDESHFMDSQHPKK 897
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A835Z4J6_9STRA (Plasma membrane ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J6_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.580e-21 Identity = 62/142 (43.66%), Postives = 81/142 (57.04%), Query Frame = 3 Query: 3 VITLMYLQISLSAFLTIFAARSTT--WAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDG---------------------GTAIFVWVYCLVGFGLQDSAKVAMIGLMKRHNWFNYNHVTSHVHLYPAAHYVES 359 ++ MYL+ISLS FLT+FAAR+ W V PGK+LM AF++AVG+ST +A TWPL EGAS ID G VW+YCLV F +QD KV + LM ++N + N TSHV Y +H+ +S Sbjct: 870 IVAAMYLKISLSDFLTLFAARNRGPFWTV---RPGKLLMAAFLLAVGISTTLACTWPLGEGASSIDSRTCAAASSCCLAGVSATLMLHGVRALVWIYCLVWFLIQDLVKVGLYKLMFKYNILHINRQTSHVENYDESHFQDS 1008
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A7S3FK65_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FK65_9VIRI) HSP 1 Score: 86.3 bits (212), Expect = 3.320e-15 Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 3 Query: 3 VITLMYLQISLSAFLTIFAARSTTWAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDGGTAIFVWVYCLVGFGLQDSAKVAM 269 V+TL+YL+ISLS F+T+F AR T +APGK+L GA VA G ST+++ WP E + G +FVWVYC+ F +QD AKVA+ Sbjct: 262 VMTLVYLKISLSDFMTVFTAR-TQGLFYTRAPGKLLFGAACVATGASTLLSAAWPFGETLESLSAGHVLFVWVYCVAWFLIQDLAKVAI 349
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A0G4IWY7_PLABS (Plasma membrane ATPase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IWY7_PLABS) HSP 1 Score: 85.1 bits (209), Expect = 1.640e-14 Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 3 Query: 3 VITLMYLQISLSAFLTIFAARSTTWAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDGGTAIFVWVYCLVGFGLQDSAKVAMIGL 278 V+T +YL++SLS FLTIF+AR+ + P +L GA + AV +STI++LTWP EGA I+ +F+W+YCL F +QD KVA+ L Sbjct: 855 VVTCIYLKVSLSDFLTIFSARTGADPCFSSRPSGVLFGAALFAVAMSTILSLTWPFGEGAEAIEILNVVFIWIYCLCWFFIQDLTKVAVFKL 946
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A0G4J3Y2_PLABS (Plasma membrane ATPase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J3Y2_PLABS) HSP 1 Score: 82.0 bits (201), Expect = 1.730e-13 Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 3 Query: 3 VITLMYLQISLSAFLTIFAARSTTWAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDGGTAIFVWVYCLVGFGLQDSAKVAMIGLMKR 287 V+T +YL++SLS FLTIFAAR+ + P L+ A AV +STI++LTWP +GA + IF+W+YCLV F +QD+ KV L R Sbjct: 810 VVTSIYLKVSLSDFLTIFAARTGAAPCYSSRPSIALLAAAFFAVLMSTILSLTWPFDQGAEPVHFKNVIFIWIYCLVWFIIQDACKVGAFRLADR 904
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A0H5QP08_9EUKA (Plasma membrane ATPase n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QP08_9EUKA) HSP 1 Score: 80.1 bits (196), Expect = 7.510e-13 Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 3 Query: 3 VITLMYLQISLSAFLTIFAARSTTWAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDGGTAIFVWVYCLVGFGLQDSAK 260 VIT +YL++SLS FLTIFAAR+ T + +P ++L GA + AV STI++L WP +G + + +A+FVW+YCL+ F +QD+ K Sbjct: 816 VITSIYLKVSLSDFLTIFAARTGTHPCFSTSPSRVLFGAALFAVSCSTILSLFWPFDQGEA-LTWDSALFVWIYCLIWFVIQDAFK 900
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A7S0LQ70_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQ70_9EUKA) HSP 1 Score: 72.4 bits (176), Expect = 5.630e-12 Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 18 YLQISLSAFLTIFAARSTTWAVVNKAPGKMLMGAFVVAVGVSTIVALTWP-------LKEGASQIDG-GTAIFVWVYCLVGFGLQDSAKVAMIGLMKRHNWFNYN 308 YL++S+S FLT+F+AR+ AP +LMGA +A+ +STI++ WP EG + A++VW+YC+ + +QD+AKV ++K++N F YN Sbjct: 11 YLKVSISDFLTLFSARTNENWFWTTAPAPILMGAGAIALSLSTIISCAWPPSYPDGVYTEGLGRRSPQAMALYVWLYCIGWWFVQDAAKVGTFYILKKYNLFGYN 115
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: A0A7S4D7D4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7D4_HETAK) HSP 1 Score: 76.3 bits (186), Expect = 6.480e-12 Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 3 Query: 9 TLMYLQISLSAFLTIFAARSTT--WAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDGGTAI-FVWVYCLVGFGLQDSAKVAMIGLMKRHNWFNYN 308 T +YL+ S+S FLT+FA+R+ W + PG+ L+ AF VAVGVSTI A TWP G GGTAI +W YCL F +QD KV + + ++N F N Sbjct: 187 TALYLKCSVSDFLTLFASRNHGFFW---EQRPGRALVAAFAVAVGVSTIFAWTWPF--GDMDPIGGTAIVLIWAYCLFWFLVQDMCKVIVYRFLHKYNVFGIN 284
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Match: K3WH59_GLOUD (Cation_ATPase_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH59_GLOUD) HSP 1 Score: 76.6 bits (187), Expect = 9.850e-12 Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 3 Query: 3 VITLMYLQISLSAFLTIFAARSTTWAVVNKAPGKMLMGAFVVAVGVSTIVALTWPLKEGASQIDGGTAIFVWVYCLVGFGLQDSAKVAMIGLMKR 287 V+ +MYL+ISLS F+T+F AR+ ++ +APG++L A + A +ST++A+ WP E I A+FVW+YCL F +QD KV ++ L++R Sbjct: 577 VMMMMYLKISLSDFMTVFTARTESY-FFTRAPGRLLAAAALFATVISTLLAIFWPFTE-MQAISPKLALFVWIYCLGWFFVQDIGKVVLVFLLER 669 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19212.5680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19212.5680.1 >prot_L-elsbetiae_contig19212.5680.1 ID=prot_L-elsbetiae_contig19212.5680.1|Name=mRNA_L-elsbetiae_contig19212.5680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp MYLQISLSAFLTIFAARSTTWAVVNKAPGKMLMGAFVVAVGVSTIVALTWback to top mRNA from alignment at L-elsbetiae_contig19212:543..2244+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig19212.5680.1 ID=mRNA_L-elsbetiae_contig19212.5680.1|Name=mRNA_L-elsbetiae_contig19212.5680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1702bp|location=Sequence derived from alignment at L-elsbetiae_contig19212:543..2244+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19212:543..2244+ >mRNA_L-elsbetiae_contig19212.5680.1 ID=mRNA_L-elsbetiae_contig19212.5680.1|Name=mRNA_L-elsbetiae_contig19212.5680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig19212:543..2244+ (Laminarionema elsbetiae ELsaHSoW15)back to top |