mRNA_L-elsbetiae_contig1919.5666.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1919.5666.1
Unique NamemRNA_L-elsbetiae_contig1919.5666.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1919.5666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1919contigL-elsbetiae_contig1919:3960..4698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size511
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1919.5666.1prot_L-elsbetiae_contig1919.5666.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1919 4144..4698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.5317543-UTR-L-elsbetiae_contig1919:3959..41431622815796.5317543-UTR-L-elsbetiae_contig1919:3959..4143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1919 3960..4143 -
1691683108.5811474-UTR-L-elsbetiae_contig1919:3959..41431691683108.5811474-UTR-L-elsbetiae_contig1919:3959..4143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1919 3960..4143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.5427246-CDS-L-elsbetiae_contig1919:4143..44041622815796.5427246-CDS-L-elsbetiae_contig1919:4143..4404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1919 4144..4404 -
1691683108.5965958-CDS-L-elsbetiae_contig1919:4143..44041691683108.5965958-CDS-L-elsbetiae_contig1919:4143..4404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1919 4144..4404 -
1622815796.5563872-CDS-L-elsbetiae_contig1919:4632..46981622815796.5563872-CDS-L-elsbetiae_contig1919:4632..4698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1919 4633..4698 -
1691683108.607099-CDS-L-elsbetiae_contig1919:4632..46981691683108.607099-CDS-L-elsbetiae_contig1919:4632..4698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1919 4633..4698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1919.5666.1

>prot_L-elsbetiae_contig1919.5666.1 ID=prot_L-elsbetiae_contig1919.5666.1|Name=mRNA_L-elsbetiae_contig1919.5666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
GLIGQHKPLYVPARASTYHSPSQDDSPQQQCFFRRHTIISRSRRGPFLQR
SILAGSGRASGKIVGCWVSRFVVIEVRSVAQRGEEGRRNCAQLINEMNAS
FHKHEIRG*
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mRNA from alignment at L-elsbetiae_contig1919:3960..4698-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1919.5666.1 ID=mRNA_L-elsbetiae_contig1919.5666.1|Name=mRNA_L-elsbetiae_contig1919.5666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=739bp|location=Sequence derived from alignment at L-elsbetiae_contig1919:3960..4698- (Laminarionema elsbetiae ELsaHSoW15)
GGTCTGATAGGTCAACACAAGCCCTTGTACGTACCAGCACGTGCCAGCAC
GTACCATTCCCCGTCGGTAAGTAGATAGTCTACATAAGGAGTACGAAATA
GTCTACATATCGTTGAGTGCGGCGTATTTTTTAGAGGCTCGTCGTATGCA
GGGATAGCTGCATGTGTAGTATATTTACAGACCCCTGACTCCGCTGCCCC
CCGCCTCTCATCCGTAATCTTGCGTTTCCTCCTGCCTCCTTTTTCTTCAA
CTCTGCATGTTTTGCTTCTCTTCGTACATGGATCCTGAGGGAAGCAAGAT
GACAGCCCACAGCAGCAGTGTTTCTTTCGCCGACACACAATCATTTCAAG
GAGCCGCCGTGGGCCGTTTCTTCAGCGATCGATTCTTGCAGGATCAGGGA
GAGCAAGTGGGAAAATTGTTGGGTGCTGGGTCTCGCGCTTTGTAGTGATA
GAGGTGCGTAGCGTCGCGCAGCGAGGTGAAGAGGGGCGGCGCAACTGCGC
ACAGCTGATAAATGAAATGAATGCCTCTTTCCACAAACACGAAATCCGGG
GATGATAGAAAAAGTCCGCAGAGGAGATCTGCGGGCCGGACATCCAGGAA
ACATGGATGGCCGATACCTTACGGCGAACTAAACCAGCACACGGCGGAGC
TGGGTTAGGGGTTTTGGAGTTGTGTCGGAAGTTGCGTAGGGTTAGATCGC
CGGTATAGTCTAGGGTGAGTAGGGTTGCGTTGCCGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1919:3960..4698-

>mRNA_L-elsbetiae_contig1919.5666.1 ID=mRNA_L-elsbetiae_contig1919.5666.1|Name=mRNA_L-elsbetiae_contig1919.5666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1919:3960..4698- (Laminarionema elsbetiae ELsaHSoW15)
GGTCTGATAGGTCAACACAAGCCCTTGTACGTACCAGCACGTGCCAGCAC
GTACCATTCCCCGTCGGGTCTGATAGGTCAACACAAGCCCTTGTACGTAC
CAGCACGTGCCAGCACGTACCATTCCCCGTCGCAAGATGACAGCCCACAG
CAGCAGTGTTTCTTTCGCCGACACACAATCATTTCAAGGAGCCGCCGTGG
GCCGTTTCTTCAGCGATCGATTCTTGCAGGATCAGGGAGAGCAAGTGGGA
AAATTGTTGGGTGCTGGGTCTCGCGCTTTGTAGTGATAGAGGTGCGTAGC
GTCGCGCAGCGAGGTGAAGAGGGGCGGCGCAACTGCGCACAGCTGATAAA
TGAAATGAATGCCTCTTTCCACAAACACGAAATCCGGGGATGACAAGATG
ACAGCCCACAGCAGCAGTGTTTCTTTCGCCGACACACAATCATTTCAAGG
AGCCGCCGTGGGCCGTTTCTTCAGCGATCGATTCTTGCAGGATCAGGGAG
AGCAAGTGGGAAAATTGTTGGGTGCTGGGTCTCGCGCTTTGTAGTGATAG
AGGTGCGTAGCGTCGCGCAGCGAGGTGAAGAGGGGCGGCGCAACTGCGCA
CAGCTGATAAATGAAATGAATGCCTCTTTCCACAAACACGAAATCCGGGG
ATGA
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