mRNA_L-elsbetiae_contig1915.5654.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1915.5654.1
Unique NamemRNA_L-elsbetiae_contig1915.5654.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1915.5654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1915contigL-elsbetiae_contig1915:19960..21062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size631
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1915.5654.1prot_L-elsbetiae_contig1915.5654.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1915 20046..20886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.604217-UTR-L-elsbetiae_contig1915:19959..200451622815795.604217-UTR-L-elsbetiae_contig1915:19959..20045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1915 19960..20045 -
1691683107.9308257-UTR-L-elsbetiae_contig1915:19959..200451691683107.9308257-UTR-L-elsbetiae_contig1915:19959..20045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1915 19960..20045 -
1622815795.641728-UTR-L-elsbetiae_contig1915:20886..210621622815795.641728-UTR-L-elsbetiae_contig1915:20886..21062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1915 20887..21062 -
1691683107.9852352-UTR-L-elsbetiae_contig1915:20886..210621691683107.9852352-UTR-L-elsbetiae_contig1915:20886..21062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1915 20887..21062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.617005-CDS-L-elsbetiae_contig1915:20045..200461622815795.617005-CDS-L-elsbetiae_contig1915:20045..20046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1915 20046..20046 -
1691683107.9513054-CDS-L-elsbetiae_contig1915:20045..200461691683107.9513054-CDS-L-elsbetiae_contig1915:20045..20046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1915 20046..20046 -
1622815795.6286159-CDS-L-elsbetiae_contig1915:20518..208861622815795.6286159-CDS-L-elsbetiae_contig1915:20518..20886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1915 20519..20886 -
1691683107.966629-CDS-L-elsbetiae_contig1915:20518..208861691683107.966629-CDS-L-elsbetiae_contig1915:20518..20886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1915 20519..20886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1915.5654.1

>prot_L-elsbetiae_contig1915.5654.1 ID=prot_L-elsbetiae_contig1915.5654.1|Name=mRNA_L-elsbetiae_contig1915.5654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MTVVPSPPTLCVAVAPAYARPALHVSYHTLRRPPASAFRAAPSGKPSTRI
CDLALTSARVPTATGVDARLPASSPFMPSSSRTTPGLLAANNLRGGCVNG
RARAPHHRARRPLRRFLAPALV*
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mRNA from alignment at L-elsbetiae_contig1915:19960..21062-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1915.5654.1 ID=mRNA_L-elsbetiae_contig1915.5654.1|Name=mRNA_L-elsbetiae_contig1915.5654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1103bp|location=Sequence derived from alignment at L-elsbetiae_contig1915:19960..21062- (Laminarionema elsbetiae ELsaHSoW15)
AAAGCATTTTCACCTCCGTTTTCTCCTTGTTGTTCGCCGTGATTTCATCT
CAGGCAGGCGGAAGCTGAACATCTCAGCAGCCTGGCGGAAGACAGGCAAC
ACTGACAATTTTGAACGACATTTGGAAGCCACGCAAGCAGTACGCCACGC
CGCCCACCACCTGACGCCTTCGGAGGATGACCGTCGTGCCGTCTCCGCCA
ACACTCTGTGTGGCCGTAGCGCCCGCCTACGCTCGGCCGGCTTTGCATGT
GTCGTATCACACTCTGCGGAGGCCGCCCGCGTCAGCATTTCGAGCGGCGC
CGAGCGGTAAGCCCTCTACTCGTATCTGCGACCTAGCATTAACATCGGCG
AGGGTGCCAACTGCTACCGGCGTTGATGCTCGCCTTCCGGCATCATCCCC
CTTCATGCCATCTTCGTCACGGACGACGCCGGGGCTGCTTGCCGCGAATA
ACCTGCGAGGAGGCTGCGTGAACGGGAGAGCACGTGCTCCTCATCATCGA
GCGAGAAGACCGCTAAGGAGATTCCTTGCCCCGGCGCTCGTGTGGTGAGT
TTTACTGCAATAGCATGTAGCTATGTTATGTTTGTACCGTAGGTGACACA
AGATACCACACCCCTGGACCGACTTTTGGAGCTCCATTACTCCGTGACGA
AGAGGGTGCCAGCACCAAACGACACATTTTTCGAACAGCCCTCGAGTAGA
TTTTTCAAATCCACCCTCTTTCGGCACTGGCACTCATCTTGCTGGGGAGG
AATCGAGCTTTGGTATCTGTCCAGGGGGTGTGGTATCCTGTGTCACCTAC
GGTACGCCATCCACACGCCGGGAGAGCCACAATATGCAATACAGTATGTA
ACCCTAAACCTAAGCTGTGACATGAACAGCACTACTGTGCTGTGCCACAC
GTGCCGTAAGTTTGTGCCGTGCTGTTACAGTAGTAGGACATGGTGGGAGA
GCTCTTATCGCACACACACGCACGTGTTCCGGACAACCCTCTTGTGTTTT
TGACTTGGGGCGCAAGAAAGGGTCGTCGCTGCTGCCTGCGACTACGATCT
CTGGTGGCGACGGGGGCCGTGGGGAGCAGCTTCGGCAGCGGCAGCCTCTT
CCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1915:19960..21062-

>mRNA_L-elsbetiae_contig1915.5654.1 ID=mRNA_L-elsbetiae_contig1915.5654.1|Name=mRNA_L-elsbetiae_contig1915.5654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig1915:19960..21062- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGTCGTGCCGTCTCCGCCAACACTCTGTGTGGCCGTAGCGCCCGC
CTACGCTCGGCCGGCTTTGCATGTGTCGTATCACACTCTGCGGAGGCCGC
CCGCGTCAGCATTTCGAGCGGCGCCGAGCGGTAAGCCCTCTACTCGTATC
TGCGACCTAGCATTAACATCGGCGAGGGTGCCAACTGCTACCGGCGTTGA
TGCTCGCCTTCCGGCATCATCCCCCTTCATGCCATCTTCGTCACGGACGA
CGCCGGGGCTGCTTGCCGCGAATAACCTGCGAGGAGGCTGCGTGAACGGG
AGAGCACGTGCTCCTCATCATCGAGCGAGAAGACCGCTAAGGAGATTCCT
TGCCCCGGCGCTCGTGTGATGACCGTCGTGCCGTCTCCGCCAACACTCTG
TGTGGCCGTAGCGCCCGCCTACGCTCGGCCGGCTTTGCATGTGTCGTATC
ACACTCTGCGGAGGCCGCCCGCGTCAGCATTTCGAGCGGCGCCGAGCGGT
AAGCCCTCTACTCGTATCTGCGACCTAGCATTAACATCGGCGAGGGTGCC
AACTGCTACCGGCGTTGATGCTCGCCTTCCGGCATCATCCCCCTTCATGC
CATCTTCGTCACGGACGACGCCGGGGCTGCTTGCCGCGAATAACCTGCGA
GGAGGCTGCGTGAACGGGAGAGCACGTGCTCCTCATCATCGAGCGAGAAG
ACCGCTAAGGAGATTCCTTGCCCCGGCGCTCGTGTGAA
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