mRNA_L-elsbetiae_contig19140.5650.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19140.5650.1
Unique NamemRNA_L-elsbetiae_contig19140.5650.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19140.5650.1 vs. uniprot
Match: D7FLG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLG9_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.180e-51
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:   13 QKFLKPALWLPGIRYPHNWWETWSVATAEPEVCVKDMGRAIENVAAAAASPEGIGGGQMVFQLASLRYSVEEKAGYAKMICVSKARWMDIVEL 291
            QKFLKPA+WLPG+RYPHNWWETWSVATA+PEVCV+DMGRAIENVA AA S EGIG GQMVFQLASLRY  EE  GYAKMICVSKARW+DIVEL
Sbjct:   32 QKFLKPAMWLPGLRYPHNWWETWSVATADPEVCVRDMGRAIENVAIAAESSEGIGDGQMVFQLASLRYCAEEGVGYAKMICVSKARWLDIVEL 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19140.5650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLG9_ECTSI2.180e-5186.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19140contigL-elsbetiae_contig19140:737..1027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_001230.1
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.4774754-CDS-L-elsbetiae_contig19140:736..10271622815795.4774754-CDS-L-elsbetiae_contig19140:736..1027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19140 737..1027 -
1691683107.888051-CDS-L-elsbetiae_contig19140:736..10271691683107.888051-CDS-L-elsbetiae_contig19140:736..1027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19140 737..1027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19140.5650.1prot_L-elsbetiae_contig19140.5650.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19140 737..1027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19140.5650.1

>prot_L-elsbetiae_contig19140.5650.1 ID=prot_L-elsbetiae_contig19140.5650.1|Name=mRNA_L-elsbetiae_contig19140.5650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
CPSPQKFLKPALWLPGIRYPHNWWETWSVATAEPEVCVKDMGRAIENVAA
AAASPEGIGGGQMVFQLASLRYSVEEKAGYAKMICVSKARWMDIVEL
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mRNA from alignment at L-elsbetiae_contig19140:737..1027-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19140.5650.1 ID=mRNA_L-elsbetiae_contig19140.5650.1|Name=mRNA_L-elsbetiae_contig19140.5650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig19140:737..1027- (Laminarionema elsbetiae ELsaHSoW15)
TGCCCCTCCCCCCAGAAATTTCTCAAGCCGGCGCTGTGGCTGCCGGGCAT
CCGCTACCCCCACAACTGGTGGGAGACGTGGAGCGTCGCGACGGCGGAGC
CGGAGGTGTGCGTGAAGGACATGGGGCGCGCGATCGAGAACGTGGCGGCG
GCGGCGGCATCGCCCGAGGGGATAGGCGGCGGCCAGATGGTGTTCCAGCT
GGCCTCCCTGCGGTATTCCGTGGAGGAAAAGGCCGGCTATGCCAAGATGA
TCTGCGTCTCGAAGGCGCGGTGGATGGACATCGTGGAGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19140:737..1027-

>mRNA_L-elsbetiae_contig19140.5650.1 ID=mRNA_L-elsbetiae_contig19140.5650.1|Name=mRNA_L-elsbetiae_contig19140.5650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig19140:737..1027- (Laminarionema elsbetiae ELsaHSoW15)
TGCCCCTCCCCCCAGAAATTTCTCAAGCCGGCGCTGTGGCTGCCGGGCAT
CCGCTACCCCCACAACTGGTGGGAGACGTGGAGCGTCGCGACGGCGGAGC
CGGAGGTGTGCGTGAAGGACATGGGGCGCGCGATCGAGAACGTGGCGGCG
GCGGCGGCATCGCCCGAGGGGATAGGCGGCGGCCAGATGGTGTTCCAGCT
GGCCTCCCTGCGGTATTCCGTGGAGGAAAAGGCCGGCTATGCCAAGATGA
TCTGCGTCTCGAAGGCGCGGTGGATGGACATCGTGGAGCTGTGCCCCTCC
CCCCAGAAATTTCTCAAGCCGGCGCTGTGGCTGCCGGGCATCCGCTACCC
CCACAACTGGTGGGAGACGTGGAGCGTCGCGACGGCGGAGCCGGAGGTGT
GCGTGAAGGACATGGGGCGCGCGATCGAGAACGTGGCGGCGGCGGCGGCA
TCGCCCGAGGGGATAGGCGGCGGCCAGATGGTGTTCCAGCTGGCCTCCCT
GCGGTATTCCGTGGAGGAAAAGGCCGGCTATGCCAAGATGATCTGCGTCT
CGAAGGCGCGGTGGATGGACATCGTGGAGCTG
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