mRNA_L-elsbetiae_contig1912.5643.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1912.5643.1 vs. uniprot
Match: A0A6H5L2E5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E5_9PHAE) HSP 1 Score: 304 bits (778), Expect = 3.530e-82 Identity = 198/393 (50.38%), Postives = 235/393 (59.80%), Query Frame = 3 Query: 2349 QDSGVVTAQCEFCLRRYLKAAMSTHLQGCELRLVRCPFQCGVKVLVRNLDKHKNSCPMRQSGENKEDVESAASSGSIST--ATLETHPTTPPTNKEREKGDT-----ARDEENAEERSQLVAQGPGQGDP--------------SRTVTCMRCQESLPFLLVPSHGAKCKGKKESGFHLGA--TAAAPPVASERQE-------------QELSLRCPAKSTEIESKSKTLTAAAEKSAPSEGLSQSSISGSDWRKSPSPLTS-----PRDLG-MPRPFSSRLGAPLSPPAAGTKAWHGACRTEEGVPPGAKVPLSPARSKNVRTWGTRQVTSWLRDIMRPPRADVISRFHDGGVDGTTLLGITDRYLLHPTEGMGITDESTRRQILEALGSLR 3401 QDSGVVTAQCEFCLRRYLK+AMSTHLQ CELRLVRCPFQCGVKVLVRNL+KH SC M++S E++ V ++A+ + AT T PP R+KGD DE NA + ++A GP RTVTCMRC ESLPF LVPSHG KCKGKK G LGA TA +P SER + + R P+ + + S+S++ GLS I S S L+S P D G +P+ S R PA KAWH + R + PG +VP SP R K+VR WGTRQVTSWLR+IMRPPRAD+IS+FHD GVDGT LL +TDRYLLHPTEG+GITDE RRQILEA+ SL+ Sbjct: 933 QDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESAESEGVVNASATPTRVRNLDATASTR-AGPPNETTRKKGDEHASHGETDEGNARQGG-VLAIGPXXXXXXXXXXXXXXXXXXADRTVTCMRCHESLPFHLVPSHGPKCKGKKGEG-ELGARATAGSPSGTSERWQGPPSGFHYPPPFGAAVDFRPPSLRSPVSSQSRSGVGGNPLRG---GLSTPPILSSAVGTHGSTLSSLSSSGPGDTGAVPKVSSGRSVVTPCSPAVSPKAWHASSRIGTVLTPGVRVPPSPPRLKDVRAWGTRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDSLK 1319
BLAST of mRNA_L-elsbetiae_contig1912.5643.1 vs. uniprot
Match: D8LSX8_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX8_ECTSI) HSP 1 Score: 301 bits (771), Expect = 5.130e-82 Identity = 191/395 (48.35%), Postives = 233/395 (58.99%), Query Frame = 3 Query: 2349 QDSGVVTAQCEFCLRRYLKAAMSTHLQGCELRLVRCPFQCGVKVLVRNLDKHKNSCPMRQSGENKEDVESAASSGSI----STATLETHPTTPPTNKEREKGDTARDEENAEERSQLVAQGPGQ----------------------GDPSRTVTCMRCQESLPFLLVPSHGAKCKGKKESGFHLGA--TAAAPPVASERQE-------------QELSLRCPAKSTEIESKSKTLTAAAEKSAPSEGLSQSSISGSDWRKSPSPLTS--PRDLG-MPRPFSSRLGAPLSPPAAGTKAWHGACRTEEGVPPGAKVPLSPARSKNVRTWGTRQVTSWLRDIMRPPRADVISRFHDGGVDGTTLLGITDRYLLHPTEGMGITDESTRRQILEALGSLR 3401 +DSGVVTAQCEFCLRRYLK+AMSTHLQ CELRLVRCPFQCGVKVLVRNL+KH SC M++S E+ V+++A++ + +TA P T K+ ++ + DE NA++ L GPG D RTVTCMRC ESLPF LVPSHG KCKGKK G LGA TAA+P SER + R P+ + + S+S++ + SPL+S P D G +P+ S R PA KAWH + R + PG +VP SP R K+VR WGTRQVTSWLR+IMRPPRAD+IS+FHD GVDGT LL +TDRYLLHPTEG+GITDE RRQILEA+ L+ Sbjct: 734 KDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESVESGGVVDASATATRVRNLDATAGTRVEPHNETTRKKGDELASHGDEANAQQGGALAI-GPGPEPXXXXXXXXXXXXXXXXXXXXXDAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEG-ELGARATAASPSGTSERSRGPPSGFQDPPPFGAAVGFRPPSLRSPVSSQSRSGVGGTPXXXXXXXXXXXXXXXXTHGSTLSPLSSSGPGDTGAVPKISSGRSVVTPHSPAVSPKAWHASSRIGTVLTPGVRVPPSPPRLKDVRAWGTRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDFLK 1126 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1912.5643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1912.5643.1 >prot_L-elsbetiae_contig1912.5643.1 ID=prot_L-elsbetiae_contig1912.5643.1|Name=mRNA_L-elsbetiae_contig1912.5643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=745bp MDEIMRRISLVDRRVMEQDNDFADSRIISSRVEGMISALQGRQVETRLLTback to top mRNA from alignment at L-elsbetiae_contig1912:2891..11927- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1912.5643.1 ID=mRNA_L-elsbetiae_contig1912.5643.1|Name=mRNA_L-elsbetiae_contig1912.5643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9037bp|location=Sequence derived from alignment at L-elsbetiae_contig1912:2891..11927- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1912:2891..11927- >mRNA_L-elsbetiae_contig1912.5643.1 ID=mRNA_L-elsbetiae_contig1912.5643.1|Name=mRNA_L-elsbetiae_contig1912.5643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4470bp|location=Sequence derived from alignment at L-elsbetiae_contig1912:2891..11927- (Laminarionema elsbetiae ELsaHSoW15)back to top |