mRNA_L-elsbetiae_contig1912.5644.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1912.5644.1
Unique NamemRNA_L-elsbetiae_contig1912.5644.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1912.5644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1912contigL-elsbetiae_contig1912:14461..16404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.7237625-CDS-L-elsbetiae_contig1912:14460..147421622815794.7237625-CDS-L-elsbetiae_contig1912:14460..14742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 14461..14742 +
1691683107.414455-CDS-L-elsbetiae_contig1912:14460..147421691683107.414455-CDS-L-elsbetiae_contig1912:14460..14742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 14461..14742 +
1622815794.735348-CDS-L-elsbetiae_contig1912:16372..164021622815794.735348-CDS-L-elsbetiae_contig1912:16372..16402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 16373..16402 +
1691683107.424067-CDS-L-elsbetiae_contig1912:16372..164021691683107.424067-CDS-L-elsbetiae_contig1912:16372..16402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 16373..16402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1912.5644.1prot_L-elsbetiae_contig1912.5644.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1912 14461..16402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1912.5644.1

>prot_L-elsbetiae_contig1912.5644.1 ID=prot_L-elsbetiae_contig1912.5644.1|Name=mRNA_L-elsbetiae_contig1912.5644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
APFAGETYGPSAKLSVSSLDKAGAGSSTGRASTSDPAANSGDSLNSDNCC
FKTLRVPGVVSAEQEGLRRRTRSTSIAMSSKLLDDPDKTLANTASPACEA
EGRR
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mRNA from alignment at L-elsbetiae_contig1912:14461..16404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1912.5644.1 ID=mRNA_L-elsbetiae_contig1912.5644.1|Name=mRNA_L-elsbetiae_contig1912.5644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1944bp|location=Sequence derived from alignment at L-elsbetiae_contig1912:14461..16404+ (Laminarionema elsbetiae ELsaHSoW15)
GCACCCTTTGCAGGCGAAACATATGGCCCATCCGCTAAACTTTCAGTCAG
CTCGCTCGATAAAGCTGGCGCGGGTTCGTCAACAGGCAGAGCCTCTACCA
GCGACCCTGCAGCAAACAGTGGTGACTCGCTGAACTCGGACAACTGTTGC
TTCAAGACCCTCAGGGTTCCTGGCGTCGTTTCTGCAGAACAAGAAGGTCT
TCGGAGGAGGACAAGATCCACATCGATAGCAATGTCATCAAAGCTCCTGG
ACGATCCAGATAAAACACTGGCAAACACCGCTGTGAGCTCTCACATATGT
ATCTAAATACCGTAGATATGTGACACAAGATACCACACCCCCTGGACCGA
CTTTTAGACCCCCATTACTCCGTAACGAAGAGGATGCTAAGGCTAATCGA
CACATTTTCGGACAGTTCTCGAATAGATCTTCCCAGCACCACCCCCTTTC
GATACCGCACTTTTCTTGCTGGGGAGGAATGGAGCTTGAAAATCTGTCCC
TGGGGGTGTAGTATGTTGTGTCACCTACAAGGTAGTCCTGGGTCTCTGTG
TGTGTGTGTCCTTCCCATTTATTTTGTCCTGGGTCTAGAGATGAAAAATG
AAAACATCAACAAATAGATTAGCTGTGCACGCACACGGGCATCACAAAGC
ACTTGTTTGATACTCATGCTTTTCGTGACACACATTCATTTGGAGCTTTA
ACAATTTTTCTACTGAATGTCAGCGTGGCCTAGGTTAACCTGTGAAAAAA
TCGTTCCAGGGGGTCGGGAGCTCAGGACTAGATTGGTGGGCCTGACCGGC
GAGAACCCGGCGCGGAATACCCCGGCATTGTTGGGGTACCAAGATAGGAC
CAGGGGGTGTATCTCCTGCGGTTGGTGATGTTGGCTTTTCCACTTTTGTT
TTCACCTCACATATCGTTTAGAGGGGAGTGGAGGGCTCCAGACTATCTGT
GATCTTTTATTTTTTTGTGCTTTGTGGACCCTTCGGGCCCATTTTATTTA
TTTTTCTTTTCGTGTACCCTTTTTTAGGGTGAGTTGTCCTGTGATCACGG
GAATGAACCACGTAAGTATTGGAGTAGTACGGACTCATGGAGGTGGTACT
GGATAGAGAGATCGGAGCGGTTTTTAATGTGCAGATACGGCGGGTTCCCT
GCTGCCGCCGTCGGATCCCACGGAAGAGCTGGGGGTGACAGCGGGTTTCC
ACCGCTGGGCCGGGGGGTGGGGATGGGAGCAGGGCCAGGCGTGGAGAAAG
ACGTCGTCAAGGTCAGGGGTGGGTACGCCGCTATCACCGCCGCTGTCCGC
GGAAGCGACGGGGGTGTATGGAGCGGGTTTCCACCGCTGGGCCAGGGGGT
GGGGGTGGTAGCAGGAGCAGGCATTGAGTCAGCCGGTTCAGGAGTGGGAG
AGCTGCTGCTGCTGCTGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTG
CCGCTGCCACCGTAGTTGACGGAGCCTGGGGTAGCCCTCTGCGTCCTTGG
GGGACGGGAAGACCAACAACAAGAGGGGGCCCTTATAGACACACTACCCA
ACCCTCCCCTACCATCCCAAATAGCACGAAATCTTCCACATGAGATACAA
TAGCTTCCGAGGGTCTATCTTGTGTATTATCTTCAAGCACCGTTCCAGTT
TACACGAGTACAGAAACCGCAGTCCGTAAGTTGCTGTTAGCTTATCTTGT
GGGTTCGATTTTTAGGGGAGAGCAATTTTACGTGTGGGTATGGTATCATT
TTTTATGTAGTTCAGAGAACCTTACCATTAGTCTTCTGTTGTATTTCACG
CTATCAGACTACTGTATATAGCACCGAATACTTTCCAACGCATGTGATAC
TGTACATATATAGACCCAACGGTGTGTCAATATTCGACATTGCTGTCGCC
CTATGAACGCAGTCACCAGCTTGCGAAGCAGAGGGTAGGAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1912:14461..16404+

>mRNA_L-elsbetiae_contig1912.5644.1 ID=mRNA_L-elsbetiae_contig1912.5644.1|Name=mRNA_L-elsbetiae_contig1912.5644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1912:14461..16404+ (Laminarionema elsbetiae ELsaHSoW15)
GCACCCTTTGCAGGCGAAACATATGGCCCATCCGCTAAACTTTCAGTCAG
CTCGCTCGATAAAGCTGGCGCGGGTTCGTCAACAGGCAGAGCCTCTACCA
GCGACCCTGCAGCAAACAGTGGTGACTCGCTGAACTCGGACAACTGTTGC
TTCAAGACCCTCAGGGTTCCTGGCGTCGTTTCTGCAGAACAAGAAGGTCT
TCGGAGGAGGACAAGATCCACATCGATAGCAATGTCATCAAAGCTCCTGG
ACGATCCAGATAAAACACTGGCAAACACCGCTGCACCCTTTGCAGGCGAA
ACATATGGCCCATCCGCTAAACTTTCAGTCAGCTCGCTCGATAAAGCTGG
CGCGGGTTCGTCAACAGGCAGAGCCTCTACCAGCGACCCTGCAGCAAACA
GTGGTGACTCGCTGAACTCGGACAACTGTTGCTTCAAGACCCTCAGGGTT
CCTGGCGTCGTTTCTGCAGAACAAGAAGGTCTTCGGAGGAGGACAAGATC
CACATCGATAGCAATGTCATCAAAGCTCCTGGACGATCCAGATAAAACAC
TGGCAAACACCGCTTCACCAGCTTGCGAAGCAGAGGGTAGGAGGTCACCA
GCTTGCGAAGCAGAGGGTAGGAGG
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