mRNA_L-elsbetiae_contig1911.5639.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1911.5639.1
Unique NamemRNA_L-elsbetiae_contig1911.5639.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1911.5639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1911contigL-elsbetiae_contig1911:17819..21315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1309
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1911.5639.1prot_L-elsbetiae_contig1911.5639.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1911 18249..21228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.4291217-UTR-L-elsbetiae_contig1911:17818..182481622815794.4291217-UTR-L-elsbetiae_contig1911:17818..18248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1911 17819..18248 -
1691683107.2397027-UTR-L-elsbetiae_contig1911:17818..182481691683107.2397027-UTR-L-elsbetiae_contig1911:17818..18248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1911 17819..18248 -
1622815794.4612112-UTR-L-elsbetiae_contig1911:21228..213151622815794.4612112-UTR-L-elsbetiae_contig1911:21228..21315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1911 21229..21315 -
1691683107.2730143-UTR-L-elsbetiae_contig1911:21228..213151691683107.2730143-UTR-L-elsbetiae_contig1911:21228..21315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1911 21229..21315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.4396853-CDS-L-elsbetiae_contig1911:18248..189911622815794.4396853-CDS-L-elsbetiae_contig1911:18248..18991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1911 18249..18991 -
1691683107.250634-CDS-L-elsbetiae_contig1911:18248..189911691683107.250634-CDS-L-elsbetiae_contig1911:18248..18991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1911 18249..18991 -
1622815794.449735-CDS-L-elsbetiae_contig1911:21179..212281622815794.449735-CDS-L-elsbetiae_contig1911:21179..21228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1911 21180..21228 -
1691683107.2640917-CDS-L-elsbetiae_contig1911:21179..212281691683107.2640917-CDS-L-elsbetiae_contig1911:21179..21228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1911 21180..21228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1911.5639.1

>prot_L-elsbetiae_contig1911.5639.1 ID=prot_L-elsbetiae_contig1911.5639.1|Name=mRNA_L-elsbetiae_contig1911.5639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=264bp
MPNKSNGWTDLHYFQRGRNIMQTAEHSTGARGTRDDAQTAPDKTTSDNDK
DAKMGDVKLASNLDYNSLPGPARAVLVPSVWGKMGAREKQKIISQPRQCL
HRGLHRHSAAGGYRTSNGGRHTLWCEARGGRPTLGRIQQERGGIIPYRES
AATSADHPGPAQRPQSRRAPTTTEGRSHIIEAGRSINRSRQLPSPGRCQL
PQTHEERKAREIGSFGCTFIASRVRFGSAIIHGAPQGHGEPHRAGRQDHH
RLGRRRSLHPRSP*
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mRNA from alignment at L-elsbetiae_contig1911:17819..21315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1911.5639.1 ID=mRNA_L-elsbetiae_contig1911.5639.1|Name=mRNA_L-elsbetiae_contig1911.5639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3497bp|location=Sequence derived from alignment at L-elsbetiae_contig1911:17819..21315- (Laminarionema elsbetiae ELsaHSoW15)
TCCTTCCCCTCTCTCTCATGTCTCCTCTACGAGCTAATACATGCGGTTAA
CAACATCATCTGGTCTCTGAGGCTCAACCACGAACATATGCCGAACAAAT
CAAACGGGTGGACGGACTTACACTATTTCCAGCGAGGTGAGAGTTTGGAA
TATTCCGGCAGGCAGCTTTTCCAGGTGGGTCTTCGACAGGTTACTGTGGA
AAAGGCGGGGGGGAACGCATCACCAGGTTGCTTCAATACAATCCAGCCAG
TACACGGTAGAACCCAATATAGCCACGCTCACCCTTCAGGTGACTGGACG
GGCTTTGGCCATTGACGATAATTCCGCGAGCAACGTGACCACATTCGGGA
GGCCTGCCTGCCATTCGTCCGCACCGTGCTACGTCTTCAGATGGAGGGCT
AGGGTCAGGCTTCAAATCAACGATGTAAGGAACCAAAGATCAAACACCTT
CGTCTTCTTCTTCGGCCTCTTTATACAGTCTCCAACTGATCAGGATATCT
CCCAAAAGGCAATAGTCAACCGCGACCCTGGCCGTCAAGCCATATATTGG
CGTATTCTGGGGTGTGAAATCCGCTGCCATGACCGCGCCCAGCTACGCTG
TATGAGAAGGGTGTGCATTCTCCGACTGAAGGGCACCGGAGACAACACCA
AAAGCCACATATTCGGAGACCAATGGGACCAACCAGCAGTTGCCCAACTC
TTTGCCGTTAAGCCGCATGCATAAAAACTCCATGCAGTTCAGATAAATAA
ATAGTTTCTAAACCACCTCACTAGCCAGCCGGAGAATGCCAAGATCCATC
GATTTTATCGTAGTGTTATTGTACTCGCAGGTGCAGGATACATCCGTTGA
AAGAGAATCCAACCGTTTGGATATAGATATGCAAGCACGGTACGAACAGG
TCAGTTGGAGAGTTAAGGTCGCTAGTTCGGTGAAGGATATCAGAACAGTT
CTGATATCCGCACCGGTATGCAGGATACATCCGTTGAAATACAATACAAC
TGTCCGTTTGGATACAGATTTGCAGGCATGGTACGAACAGGTCAGTTGGA
GAGTTTAGGTCTCTAGTTTGGTGAAGGATATCAGAGCTGTTCTGGTATAC
ACACCGGTATGCAGGAATCTTGGGTGTGAGCAATCCCCCCCTTGCTCACT
TCGCCATCCTCCCCCGAGCTTGTGAGCACAGAGAGAGAAATACAAGAAAG
TGAGTGAACCTTTGAGCTTTGATACCCTGCTAACAGTGGTCGGGTCCGCC
CCACACTGCTACTCCGCCCATATAGGCCTGAATCCCATAAAACATAGCAT
CTGCAGACAGGGTACACATCAAGTAGCTTTGAGGGCACTCCGTTTTTTTT
CTCTCGCTTGCACACTCTAGTCTTTGTACCCCAACGTACTCGACGCTCAC
AAGCATGGCAAGTCCAGAGTCAGCGTGCCCTGATTCTGCCTGCAGCAGTC
CGCTGCATTCACCTTCGCCTGATAGCTCGCGCCCCTCGGTGTCAAATAAT
GATTCCTAGCGGTCTGTTGAGTTGCCAGTATACCGAGTCGCCGAATCCGT
GTGTTCTCGAGCTTGTGCGACTAGAGTCTCTAGGCCTGCGTCTACTGCAT
GCATGCCTCCCGTCGATGTAGTGTCGGAACCCAGGGTGCCAACCTCCCTA
TCCCTGTATGAGAGCACCCTCGAAGCCCTCGACCTCGACGAAAGCTCCGA
CTCGGGAAGCGCGCGGAAGGAGCCGGCATCTCCAAAACCAGCCAATCGGC
AAATCGGGGAGATCGACATATTTGCTGCAGAACGGATCGACGACCTTTCG
GCTGGCCACGACGACACGGACGCCATATTTCGCCGCCTGCCTCTTCGCCG
TCCGTGCGGTACTGCCTCGCCGTTGATGACGCCTCACTCAGCAGTACGCG
CATCTACGACGTCGTCGTATTCGTCAAGGGCCGGCGGAGCTGGATCAAAG
TTTCCCCCCCGACATCGGCATTTCGGACAAATTTCCGTTCGACACCAGCA
TATCGGATCAAGAAGTCGCGTCCACCCGAGAGGTATATCCACCACCTCTG
GGAGGCGACCCGGTGCCCACGTCCTCTTCAAACATGGCGCGCGACACCAT
TTACGGTGCTCTTAAATCTCCAGCGGACTTGCGTGTAGAGACGCTCCTCC
GCGATGCTCGCTGTGCCTAGCGCGCTCGTCGAAAAGTCGTATCTCCGCCT
TCAGAATCCCCGTCAACGGTATACTCCACAATACACAGCTTGCTCCGCCA
ACCGCTGTCCGACATTGATACGTTTTTGCTGCCCGCCCTTCCGCCGCCTA
CAAACGACACACGCATCCACGCAGGACGCAATATCATGCAGACTGCGGAG
CACAGCACCGGCGCCAGGGGCACGAGAGACGACGCGCAGACGGCTCCCGA
CAAAACCACCTCCGACAACGACAAGGACGCCAAAATGGGAGATGTCAAAT
TGGCCAGCAACCTCGACTACAATTCGCTGCCGGGTCCCGCGAGAGCCGTG
CTGGTCCCGTCGGTGTGGGGCAAGATGGGCGCCCGCGAAAAACAAAAAAT
TATTTCACAGCCACGCCAATGTCTGCACCGCGGTCTACACCGACACAGCG
CAGCGGGAGGCTACCGCACGTCAAATGGGGGACGACACACTCTCTGGTGC
GAAGCAAGAGGCGGCCGACCAACTCTCGGCCGAATCCAACAAGAACGCGG
AGGCATCATCCCATACCGAGAATCTGCAGCGACAAGTGCAGACCATCCAG
GACCAGCTCAACGCCCCCAAAGCCGCCGGGCACCTACAACAACAGAAGGT
CGAAGCCACATCATCGAGGCTGGAAGAAGCATCAATCGATCTCGACAACT
CCCGTCACCCGGACGCTGCCAACTCCCGCAAACGCACGAAGAAAGGAAAG
CGCGTGAAATCGGAAGTTTCGGCTGCACCTTCATCGCCAGCCGGGTCAGA
TTCGGAAGCGCCATAATACACGGTGCGCCTCAGGGCCACGGCGAGCCACA
CCGTGCAGGGCGCCAAGACCATCACCGTCTCGGACGCCGACGATCACTTC
ATCCACGTTCTCCTTGATGACGTCGCGCATTTCGGCATCATCGGCTTCGT
GGTGTCTTCAGGTACATCGCAACAGCGCCTTCATGCGTGGAATACGCAGA
AACACCGACGAATCCCGTGGAGCTCCCAGCTGAAGACGCGTTTTTGGACG
TAGACCCCACCGCAACTTCGATAGCTATTATTGCGTCCGCCGCCGACACT
GTATCGCGACCGGTGGTCTCGTAGTTCTGTTTTAGTTTGTTTTCGTTTTC
CTCAAATGTTTTGGCCTGAAGTTGCCGCACAACCTTTTTGCGCGCCACAG
GTTCTGGGTGCCATTTTCGTTGCCATATTGCACCATTTTTATCCTTAAGG
TTAAGCTAAGTTTTGTAAGTTTTTTATTTTTAGTTCTACCTTCCGGGCTG
GTGCGCCAGGTTTTTTTTTATTTGTTTTTTCTGTACTGTTTTCTTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1911:17819..21315-

>mRNA_L-elsbetiae_contig1911.5639.1 ID=mRNA_L-elsbetiae_contig1911.5639.1|Name=mRNA_L-elsbetiae_contig1911.5639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1584bp|location=Sequence derived from alignment at L-elsbetiae_contig1911:17819..21315- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAACAAATCAAACGGGTGGACGGACTTACACTATTTCCAGCGAGA
TGCCGAACAAATCAAACGGGTGGACGGACTTACACTATTTCCAGCGAGGA
CGCAATATCATGCAGACTGCGGAGCACAGCACCGGCGCCAGGGGCACGAG
AGACGACGCGCAGACGGCTCCCGACAAAACCACCTCCGACAACGACAAGG
ACGCCAAAATGGGAGATGTCAAATTGGCCAGCAACCTCGACTACAATTCG
CTGCCGGGTCCCGCGAGAGCCGTGCTGGTCCCGTCGGTGTGGGGCAAGAT
GGGCGCCCGCGAAAAACAAAAAATTATTTCACAGCCACGCCAATGTCTGC
ACCGCGGTCTACACCGACACAGCGCAGCGGGAGGCTACCGCACGTCAAAT
GGGGGACGACACACTCTCTGGTGCGAAGCAAGAGGCGGCCGACCAACTCT
CGGCCGAATCCAACAAGAACGCGGAGGCATCATCCCATACCGAGAATCTG
CAGCGACAAGTGCAGACCATCCAGGACCAGCTCAACGCCCCCAAAGCCGC
CGGGCACCTACAACAACAGAAGGTCGAAGCCACATCATCGAGGCTGGAAG
AAGCATCAATCGATCTCGACAACTCCCGTCACCCGGACGCTGCCAACTCC
CGCAAACGCACGAAGAAAGGAAAGCGCGTGAAATCGGAAGTTTCGGCTGC
ACCTTCATCGCCAGCCGGGTCAGATTCGGAAGCGCCATAATACACGGTGC
GCCTCAGGGCCACGGCGAGCCACACCGTGCAGGGCGCCAAGACCATCACC
GTCTCGGACGCCGACGATCACTTCATCCACGTTCTCCTTGAGACGCAATA
TCATGCAGACTGCGGAGCACAGCACCGGCGCCAGGGGCACGAGAGACGAC
GCGCAGACGGCTCCCGACAAAACCACCTCCGACAACGACAAGGACGCCAA
AATGGGAGATGTCAAATTGGCCAGCAACCTCGACTACAATTCGCTGCCGG
GTCCCGCGAGAGCCGTGCTGGTCCCGTCGGTGTGGGGCAAGATGGGCGCC
CGCGAAAAACAAAAAATTATTTCACAGCCACGCCAATGTCTGCACCGCGG
TCTACACCGACACAGCGCAGCGGGAGGCTACCGCACGTCAAATGGGGGAC
GACACACTCTCTGGTGCGAAGCAAGAGGCGGCCGACCAACTCTCGGCCGA
ATCCAACAAGAACGCGGAGGCATCATCCCATACCGAGAATCTGCAGCGAC
AAGTGCAGACCATCCAGGACCAGCTCAACGCCCCCAAAGCCGCCGGGCAC
CTACAACAACAGAAGGTCGAAGCCACATCATCGAGGCTGGAAGAAGCATC
AATCGATCTCGACAACTCCCGTCACCCGGACGCTGCCAACTCCCGCAAAC
GCACGAAGAAAGGAAAGCGCGTGAAATCGGAAGTTTCGGCTGCACCTTCA
TCGCCAGCCGGGTCAGATTCGGAAGCGCCATAATACACGGTGCGCCTCAG
GGCCACGGCGAGCCACACCGTGCAGGGCGCCAAGACCATCACCGTCTCGG
ACGCCGACGATCACTTCATCCACGTTCTCCTTGA
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