mRNA_L-elsbetiae_contig1910.5633.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1910.5633.1
Unique NamemRNA_L-elsbetiae_contig1910.5633.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1910.5633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1910contigL-elsbetiae_contig1910:16186..18410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1964
Cds size1251
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1910.5633.1prot_L-elsbetiae_contig1910.5633.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1910 16456..17706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.1304786-UTR-L-elsbetiae_contig1910:16185..164551622815794.1304786-UTR-L-elsbetiae_contig1910:16185..16455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1910 16186..16455 -
1691683107.0718102-UTR-L-elsbetiae_contig1910:16185..164551691683107.0718102-UTR-L-elsbetiae_contig1910:16185..16455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1910 16186..16455 -
1622815794.1555643-UTR-L-elsbetiae_contig1910:17706..181091622815794.1555643-UTR-L-elsbetiae_contig1910:17706..18109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1910 17707..18109 -
1691683107.1004329-UTR-L-elsbetiae_contig1910:17706..181091691683107.1004329-UTR-L-elsbetiae_contig1910:17706..18109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1910 17707..18109 -
1622815794.1651244-UTR-L-elsbetiae_contig1910:18370..184101622815794.1651244-UTR-L-elsbetiae_contig1910:18370..18410Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1910 18371..18410 -
1691683107.109217-UTR-L-elsbetiae_contig1910:18370..184101691683107.109217-UTR-L-elsbetiae_contig1910:18370..18410Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1910 18371..18410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.1438797-CDS-L-elsbetiae_contig1910:16455..177061622815794.1438797-CDS-L-elsbetiae_contig1910:16455..17706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1910 16456..17706 -
1691683107.0903583-CDS-L-elsbetiae_contig1910:16455..177061691683107.0903583-CDS-L-elsbetiae_contig1910:16455..17706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1910 16456..17706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1910.5633.1

>prot_L-elsbetiae_contig1910.5633.1 ID=prot_L-elsbetiae_contig1910.5633.1|Name=mRNA_L-elsbetiae_contig1910.5633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=417bp
MADCRPSESGGRAVRDGIDTMSLDSDGAGRRLEGHRRSGSSGSSSRSGRS
TDPVYLRQQARGSAVPTTTSGTAAGGERGASSSLSSSSLPPGELSHFSLY
PPAPPASVAKRRVLRAPAPSSSSRGGGGGSAAAGRSASTRGDGFGRRAAD
VIDGFAVADDRKGRWRARGGAASAAAAEEEAEEAGCFVGGMSGGYDVRSG
GRLAEAAAAGHRYQQREHRRDADQREWEASDPRLLLPPPLSSSCSAAYSG
VYPSPRGTGSHGSGGGRRPPSPAPLAPQSFSTWKSASLRRALERPATAGS
TSSYLASTLAGAGAATGGVASYVPAAVTRGSSSSGRLTGEGGGGSGSVRS
SGSSRSTGSSSITRTGSYNGQTLSSLRRSQVTRSRRAVDAAGGGPGASAA
AAPRSRSAYAGAPKFY*
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mRNA from alignment at L-elsbetiae_contig1910:16186..18410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1910.5633.1 ID=mRNA_L-elsbetiae_contig1910.5633.1|Name=mRNA_L-elsbetiae_contig1910.5633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2225bp|location=Sequence derived from alignment at L-elsbetiae_contig1910:16186..18410- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGTCGAGACGGAGTAGGGGGAAAACGGCAACGGCAGGGCCGTCGGCG
CGAAGAGCCGCCGCGGCCGCTGCCGCTGCCGCTGTGCTGGACGATGCGGC
TGACGATGCGGCAGCCGCAGCGGCTGGGTCCGGAGTTCGCGGAGAGGGCA
GCAACACCGGGGGGCGTGACCACGGCGGTGCCTATAGCTTTGAGGAGGTG
GACGCCGCGGCGAAGGAGCGGTACGATGCCACGGCGAGGTGGCGAGCGGC
GCGCCCGTCGCGATCGACGGGGGGCGGCGGCGGCAGCGGCGGCGGCGGCA
GCGCCGGCGCCGGCAGCGGCGGCGGAGCGGGGTCAAGGCGCGGGCAGCCC
CACCCGCGGGGAGAAGGCGACAACGCGGCCGCCGCCCGCGGCGACAACCC
CTGGCTGGCGAGGTTACCGGCCACTGTGGGCGAGCAGGAAGCGCGAGAGC
ACAGGGCGAGCCGGGCCGACCCCAACTCCGAGAGAGAGCGACGACACCGA
ACCGGCGGCAGCGGCGAGGTCGGTGCAAGCGATGTGCGGCGGTCTCCGAG
CGCGAGCGCGAGCCCCGGCGGGGGCGGGAAGACCCGGGCGAGGGAGGGTT
CAAGGCCGCGAGCGGAGCAAGTGGGGCACAGGCCAGAACAGGCGGCAGCC
CCCACCGCGAGGTATCACTCCCGCACGCGTGTTTCTGGCGGGGCTTGGGA
GGCCATGGCGGACTGCCGGCCGTCGGAAAGCGGGGGGCGAGCCGTGCGGG
ACGGGATCGACACGATGTCCCTGGACAGCGACGGTGCCGGAAGGAGACTG
GAGGGACACCGTCGCAGCGGCAGCAGCGGCAGCAGCAGCAGGAGCGGCCG
ATCTACCGATCCGGTGTACCTCAGGCAGCAGGCGCGGGGGAGCGCCGTGC
CTACGACCACATCGGGGACGGCAGCGGGAGGAGAAAGGGGGGCGTCGTCG
TCGTTGTCATCGTCTTCTCTGCCCCCCGGCGAGCTCTCCCACTTCAGCCT
GTACCCCCCGGCGCCACCCGCGAGCGTCGCCAAGAGACGTGTGCTGCGGG
CACCGGCGCCGTCGTCGTCTTCTCGCGGTGGCGGTGGCGGTTCCGCCGCC
GCCGGCCGAAGCGCGAGCACCAGGGGCGACGGCTTCGGGAGGAGAGCGGC
AGACGTCATCGACGGCTTCGCGGTCGCGGACGACCGGAAGGGGCGGTGGC
GGGCCCGGGGCGGGGCGGCTTCGGCGGCGGCGGCGGAAGAAGAGGCCGAG
GAGGCGGGCTGCTTCGTCGGAGGCATGAGCGGTGGGTACGACGTGCGCAG
TGGAGGGAGGTTGGCAGAGGCGGCCGCGGCGGGCCACCGGTACCAGCAAC
GCGAGCACCGCCGCGACGCCGATCAGCGGGAGTGGGAAGCGTCGGATCCT
CGCCTGCTTTTGCCGCCGCCGCTGTCGTCGTCGTGTTCCGCCGCCTACAG
TGGCGTCTATCCCTCTCCGAGGGGCACCGGCAGCCACGGCAGCGGGGGGG
GGCGGCGCCCCCCCAGCCCGGCCCCCCTCGCCCCTCAGTCTTTCTCCACC
TGGAAGTCCGCTTCGCTCCGCAGGGCGCTCGAGCGGCCGGCGACGGCGGG
GTCTACGTCGTCCTACCTGGCGTCGACGCTGGCTGGGGCCGGGGCGGCGA
CCGGGGGGGTCGCCTCCTACGTTCCCGCGGCGGTAACTCGCGGGAGTTCG
TCGAGCGGAAGGCTTACGGGCGAAGGCGGCGGCGGCAGCGGCAGCGTCCG
GTCCAGCGGGAGTTCTAGGTCTACCGGGAGCAGCAGCATCACACGGACGG
GCTCGTACAATGGGCAGACGCTCTCGTCTTTGAGGCGGAGCCAGGTCACC
CGGTCGCGGAGGGCGGTGGACGCGGCGGGCGGGGGTCCGGGGGCGAGCGC
CGCGGCAGCGCCGCGATCTCGGAGTGCGTACGCGGGCGCCCCCAAATTTT
ACTAGTGTATGTATGTAACTGTTTTTCTTCTTTGGCTGTTTTTTTTTGGG
TGTGTGTGTGTTTTTTTTTTAATGCCGCGCGCGTGCGGGTTGGGTGTTTC
GTGGTCGGCGTGGACGCCCCCAGAGTTTGTGCTGGTGGCTGATTTCTTGG
CGGTATCGATATACCCTCCCTTCTCCTCCCCCCGAATTTCACCCATGTTT
GTCACTGTGAAGTATCGGCGTGTGTTTTTTTGTGGTCCGTAGTTTGGTGG
TGTTCATTTCACGGGCTTCGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1910:16186..18410-

>mRNA_L-elsbetiae_contig1910.5633.1 ID=mRNA_L-elsbetiae_contig1910.5633.1|Name=mRNA_L-elsbetiae_contig1910.5633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2502bp|location=Sequence derived from alignment at L-elsbetiae_contig1910:16186..18410- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGACTGCCGGCCGTCGGAAAGCGGGGGGCGAGCCGTGCGGGACGG
GATCGACACGATGTCCCTGGACAGCGACGGTGCCGGAAGGAGACTGGAGG
GACACCGTCGCAGCGGCAGCAGCGGCAGCAGCAGCAGGAGCGGCCGATCT
ACCGATCCGGTGTACCTCAGGCAGCAGGCGCGGGGGAGCGCCGTGCCTAC
GACCACATCGGGGACGGCAGCGGGAGGAGAAAGGGGGGCGTCGTCGTCGT
TGTCATCGTCTTCTCTGCCCCCCGGCGAGCTCTCCCACTTCAGCCTGTAC
CCCCCGGCGCCACCCGCGAGCGTCGCCAAGAGACGTGTGCTGCGGGCACC
GGCGCCGTCGTCGTCTTCTCGCGGTGGCGGTGGCGGTTCCGCCGCCGCCG
GCCGAAGCGCGAGCACCAGGGGCGACGGCTTCGGGAGGAGAGCGGCAGAC
GTCATCGACGGCTTCGCGGTCGCGGACGACCGGAAGGGGCGGTGGCGGGC
CCGGGGCGGGGCGGCTTCGGCGGCGGCGGCGGAAGAAGAGGCCGAGGAGG
CGGGCTGCTTCGTCGGAGGCATGAGCGGTGGGTACGACGTGCGCAGTGGA
GGGAGGTTGGCAGAGGCGGCCGCGGCGGGCCACCGGTACCAGCAACGCGA
GCACCGCCGCGACGCCGATCAGCGGGAGTGGGAAGCGTCGGATCCTCGCC
TGCTTTTGCCGCCGCCGCTGTCGTCGTCGTGTTCCGCCGCCTACAGTGGC
GTCTATCCCTCTCCGAGGGGCACCGGCAGCCACGGCAGCGGGGGGGGGCG
GCGCCCCCCCAGCCCGGCCCCCCTCGCCCCTCAGTCTTTCTCCACCTGGA
AGTCCGCTTCGCTCCGCAGGGCGCTCGAGCGGCCGGCGACGGCGGGGTCT
ACGTCGTCCTACCTGGCGTCGACGCTGGCTGGGGCCGGGGCGGCGACCGG
GGGGGTCGCCTCCTACGTTCCCGCGGCGGTAACTCGCGGGAGTTCGTCGA
GCGGAAGGCTTACGGGCGAAGGCGGCGGCGGCAGCGGCAGCGTCCGGTCC
AGCGGGAGTTCTAGGTCTACCGGGAGCAGCAGCATCACACGGACGGGCTC
GTACAATGGGCAGACGCTCTCGTCTTTGAGGCGGAGCCAGGTCACCCGGT
CGCGGAGGGCGGTGGACGCGGCGGGCGGGGGTCCGGGGGCGAGCGCCGCG
GCAGCGCCGCGATCTCGGAGTGCGTACGCGGGCGCCCCCAAATTTTACTA
GATGGCGGACTGCCGGCCGTCGGAAAGCGGGGGGCGAGCCGTGCGGGACG
GGATCGACACGATGTCCCTGGACAGCGACGGTGCCGGAAGGAGACTGGAG
GGACACCGTCGCAGCGGCAGCAGCGGCAGCAGCAGCAGGAGCGGCCGATC
TACCGATCCGGTGTACCTCAGGCAGCAGGCGCGGGGGAGCGCCGTGCCTA
CGACCACATCGGGGACGGCAGCGGGAGGAGAAAGGGGGGCGTCGTCGTCG
TTGTCATCGTCTTCTCTGCCCCCCGGCGAGCTCTCCCACTTCAGCCTGTA
CCCCCCGGCGCCACCCGCGAGCGTCGCCAAGAGACGTGTGCTGCGGGCAC
CGGCGCCGTCGTCGTCTTCTCGCGGTGGCGGTGGCGGTTCCGCCGCCGCC
GGCCGAAGCGCGAGCACCAGGGGCGACGGCTTCGGGAGGAGAGCGGCAGA
CGTCATCGACGGCTTCGCGGTCGCGGACGACCGGAAGGGGCGGTGGCGGG
CCCGGGGCGGGGCGGCTTCGGCGGCGGCGGCGGAAGAAGAGGCCGAGGAG
GCGGGCTGCTTCGTCGGAGGCATGAGCGGTGGGTACGACGTGCGCAGTGG
AGGGAGGTTGGCAGAGGCGGCCGCGGCGGGCCACCGGTACCAGCAACGCG
AGCACCGCCGCGACGCCGATCAGCGGGAGTGGGAAGCGTCGGATCCTCGC
CTGCTTTTGCCGCCGCCGCTGTCGTCGTCGTGTTCCGCCGCCTACAGTGG
CGTCTATCCCTCTCCGAGGGGCACCGGCAGCCACGGCAGCGGGGGGGGGC
GGCGCCCCCCCAGCCCGGCCCCCCTCGCCCCTCAGTCTTTCTCCACCTGG
AAGTCCGCTTCGCTCCGCAGGGCGCTCGAGCGGCCGGCGACGGCGGGGTC
TACGTCGTCCTACCTGGCGTCGACGCTGGCTGGGGCCGGGGCGGCGACCG
GGGGGGTCGCCTCCTACGTTCCCGCGGCGGTAACTCGCGGGAGTTCGTCG
AGCGGAAGGCTTACGGGCGAAGGCGGCGGCGGCAGCGGCAGCGTCCGGTC
CAGCGGGAGTTCTAGGTCTACCGGGAGCAGCAGCATCACACGGACGGGCT
CGTACAATGGGCAGACGCTCTCGTCTTTGAGGCGGAGCCAGGTCACCCGG
TCGCGGAGGGCGGTGGACGCGGCGGGCGGGGGTCCGGGGGCGAGCGCCGC
GGCAGCGCCGCGATCTCGGAGTGCGTACGCGGGCGCCCCCAAATTTTACT
AG
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