mRNA_L-elsbetiae_contig1910.5632.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: D8LJP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP2_ECTSI) HSP 1 Score: 221 bits (564), Expect = 3.750e-70 Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 2 Query: 200 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEEAPAFEAKSAGSAAV 547 GGVLAGGLHAVSGPDHLAALLPRIMGQKWH SMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHN+RLVAMMG+WTEGLVGVSLIAIGLLGLKESLLDYEE PAFEAKSAGSA V Sbjct: 8 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNKRLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVV 123
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: A0A835YVB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB1_9STRA) HSP 1 Score: 150 bits (380), Expect = 2.060e-42 Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = 2 Query: 194 VGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL--GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLD 496 +GGGVLAGGLHA+SGPDHLAALLPRIMG+ W +MRIGA WGLGHGFSAT+IGLAAFF KDR+ G G R ++ +GT+TE LVGVSLI IGL+GLKESLLD Sbjct: 1 MGGGVLAGGLHAISGPDHLAALLPRIMGKAWPVAMRIGAVWGLGHGFSATLIGLAAFFLKDRIQAGGGGGGRWISKLGTYTEVLVGVSLITIGLIGLKESLLD 103
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: A0A4D9DEM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEM4_9STRA) HSP 1 Score: 132 bits (331), Expect = 5.680e-35 Identity = 70/124 (56.45%), Postives = 89/124 (71.77%), Query Frame = 2 Query: 182 AFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESL-LDYEEAPAFEAKS--AGSAA 544 AF+T+ GG+LAG LHAV+GPDHLAALLPR +G++W+ +MRIGA WGLGHG SA ++G+ AFF K RL + L+ + +TE L+GVSLI IGLLGLKE+ D EA+ AGSAA Sbjct: 9 AFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHNTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSIAGSAA 132
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: A0A7S2Y0T2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T2_9STRA) HSP 1 Score: 132 bits (331), Expect = 3.120e-34 Identity = 70/126 (55.56%), Postives = 95/126 (75.40%), Query Frame = 2 Query: 146 RRLAFAALANAAAFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESL-LDYEEAPAFE 520 R LA A+A+AA+ A+VGGGVL+G LHA+SGPDHLAA++PR +G++W SM++GA WGLGHG S ++GL AF KD+L L + +++ + TWTE LVG+SLI IG LG+KES D ++A A E Sbjct: 77 RPLATVAMASAASLASVGGGVLSGSLHAISGPDHLAAVVPRCIGKRWWISMQVGALWGLGHGVSGLMMGLFAFLVKDKLNL-NKSPMISNLSTWTEILVGLSLILIGFLGVKESRSFDSDKAAAKE 201
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: W7TPT7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPT7_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.290e-33 Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = 2 Query: 182 AFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKES 487 AF+T+ GG+LAG LHAV+GPDHLAALLPR +G++W+ +MRIGA WGLGHG SA ++G+ AFF K RL + L+ + +TE L+GVSLI IGLLGLKE+ Sbjct: 133 AFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEA 234
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: A0A7S3YH60_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH60_HETAK) HSP 1 Score: 125 bits (315), Expect = 4.280e-33 Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 2 Query: 128 LGFLGPRRLAFAALANAAAFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKES 487 LG A A A FA +GGGVLAGGLHAVSGPDHLAALLPR +GQ+W + + GA WGLGHG S +GLAA+F KDRL G LV + WTE VG+SL+ IG LG KE+ Sbjct: 71 LGHAATAAAAAVAPPGVAGFAAIGGGVLAGGLHAVSGPDHLAALLPRCIGQRWFPAAQTGALWGLGHGLSGMALGLAAYFLKDRLAGGA---LVDQLSAWTEVAVGLSLVVIGALGWKEA 187
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: A0A0G4EAE2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EAE2_VITBC) HSP 1 Score: 123 bits (309), Expect = 5.360e-30 Identity = 63/110 (57.27%), Postives = 78/110 (70.91%), Query Frame = 2 Query: 176 AAAFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL------GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKES 487 AA+ TVGGG LAG LHAVSGPDHLAALLP+ +G++W + ++G WGLGHG SA ++G+ AF KDR+ GL H L+ M TWTEGLVG+SLI IG G KE+ Sbjct: 207 AASIVTVGGGALAGSLHAVSGPDHLAALLPQCLGRRWTGAGKLGLVWGLGHGLSAMIMGMLAFVLKDRIFVMDAAGL-HGGALIERMETWTEGLVGLSLILIGFFGYKEA 315
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: A0A7S1D180_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D180_CYCTE) HSP 1 Score: 116 bits (291), Expect = 7.250e-29 Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 2 Query: 167 LANAAAFATVG---GGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL-GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKES 487 +ANA A A + GG AGGLHA+SGPDHLAALLPR +GQ+W+ S R+GA WG+GHG SAT++G+ A+F K RL G+ + L+ + TE VG+SL+ IGL+G KE+ Sbjct: 84 MANAPAIAIITALVGGFAAGGLHAISGPDHLAALLPRCVGQRWYKSFRVGALWGMGHGVSATILGVMAYFLKSRLAGMTGVKSLLHRASSVTEVAVGLSLVVIGLMGFKEA 194
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: B7G7I3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7I3_PHATC) HSP 1 Score: 114 bits (285), Expect = 1.940e-27 Identity = 69/150 (46.00%), Postives = 95/150 (63.33%), Query Frame = 2 Query: 119 TTRLGFLGPRRLAFAALANAAAFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAF----FFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEEAPAFEAKSAGSAAVAVG 556 TT L + P +A AA+ A + GG+ AGGLHA++GPDHLAALLPR GQ+W+ + R+GA WG+GHG SAT+IG+AAF FK+ +G + LVA TE VG+SLI IG++G++E+ +E + +S SAA G Sbjct: 65 TTSLAMVAPAGVAVAAITGA-----MTGGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRVGALWGMGHGVSATIIGVAAFGLKNTFKNSMG-SRLQTLVAGATHVTEIAVGLSLILIGMMGIREAREWEDELDGVQPQSLSSAAADAG 208
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Match: A0A7R9ZBQ6_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBQ6_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.760e-27 Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 2 Query: 194 VGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLG-LGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKES 487 V GGV AGGLHA++GPDHLAALLPR GQ+W+ + RIGA WG+GHG SAT++G+ AF K R+ +G R+V ++ E VG SL+ IGLLG+KE+ Sbjct: 88 VSGGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGVCAFALKSRMSKMGAFSRVVRGASSFMEIAVGASLVFIGLLGIKEA 186 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1910.5632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1910.5632.1 >prot_L-elsbetiae_contig1910.5632.1 ID=prot_L-elsbetiae_contig1910.5632.1|Name=mRNA_L-elsbetiae_contig1910.5632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp RGRGKSNSGGGGGGSSSSARTRRRQRCRSYSYSYSSYHRDDAVRVFGPSAback to top mRNA from alignment at L-elsbetiae_contig1910:8120..13151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1910.5632.1 ID=mRNA_L-elsbetiae_contig1910.5632.1|Name=mRNA_L-elsbetiae_contig1910.5632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5032bp|location=Sequence derived from alignment at L-elsbetiae_contig1910:8120..13151- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1910:8120..13151- >mRNA_L-elsbetiae_contig1910.5632.1 ID=mRNA_L-elsbetiae_contig1910.5632.1|Name=mRNA_L-elsbetiae_contig1910.5632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig1910:8120..13151- (Laminarionema elsbetiae ELsaHSoW15)back to top |