mRNA_L-elsbetiae_contig1907.5616.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1907.5616.1
Unique NamemRNA_L-elsbetiae_contig1907.5616.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1907.5616.1 vs. uniprot
Match: D7G1V0_ECTSI (DRG1, developmenally regulated GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V0_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.640e-9
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2 
Query:  338 QVTIEELDIICQIPHHVVVSAAHGWNIDEV 427
            QVTIEELDIICQIPHHVVVSAAHGWNIDE+
Sbjct:  256 QVTIEELDIICQIPHHVVVSAAHGWNIDEL 285
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BLAST of mRNA_L-elsbetiae_contig1907.5616.1 vs. uniprot
Match: A0A836CK18_9STRA (DRG1, developmenally regulated GTPase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK18_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.510e-7
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 2 
Query:  338 QVTIEELDIICQIPHHVVVSAAHGWNIDEV 427
            Q+TIEELDIICQIPHHVVVSA H WN+DE+
Sbjct:  255 QLTIEELDIICQIPHHVVVSAHHRWNLDEL 284
[Close]
BLAST of mRNA_L-elsbetiae_contig1907.5616.1 vs. uniprot
Match: A0A482SMM1_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMM1_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 7.020e-5
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 2 
Query:  338 QVTIEELDIICQIPHHVVVSAAHGWNIDEV 427
            Q+TIEELDII Q+PHHV +SA HGWN DE+
Sbjct:  259 QLTIEELDIIDQMPHHVPISAHHGWNFDEL 288
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1907.5616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1V0_ECTSI1.640e-996.67DRG1, developmenally regulated GTPase 1 n=2 Tax=Ec... [more]
A0A836CK18_9STRA5.510e-783.33DRG1, developmenally regulated GTPase 1 n=1 Tax=Tr... [more]
A0A482SMM1_9ARCH7.020e-573.33GTP-binding protein n=1 Tax=archaeon TaxID=1906665... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1907contigL-elsbetiae_contig1907:13238..13834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.8298576-CDS-L-elsbetiae_contig1907:13237..138341622815792.8298576-CDS-L-elsbetiae_contig1907:13237..13834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1907 13238..13834 +
1691683106.2346709-CDS-L-elsbetiae_contig1907:13237..138341691683106.2346709-CDS-L-elsbetiae_contig1907:13237..13834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1907 13238..13834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1907.5616.1prot_L-elsbetiae_contig1907.5616.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1907 13238..13834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1907.5616.1

>prot_L-elsbetiae_contig1907.5616.1 ID=prot_L-elsbetiae_contig1907.5616.1|Name=mRNA_L-elsbetiae_contig1907.5616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
GARTGGAVGFGIVRGMLLSFDLGGPLLRVEQEKTAISRSVQFNAIHPGSD
AGVRSRLGRGARSPLLGKCDGMYVWSPLRHEYAHPRVCQPLSIYPPNASF
LGVRALSLPLVFAGDDRGARHHLPNTASRSGFRRPRVEHRRGQAAFRCDA
RPRAPLYIRTSYIRACIYLCVFSAPPCSLFKCHIAVAVCWSLPPPPRAG
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mRNA from alignment at L-elsbetiae_contig1907:13238..13834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1907.5616.1 ID=mRNA_L-elsbetiae_contig1907.5616.1|Name=mRNA_L-elsbetiae_contig1907.5616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=597bp|location=Sequence derived from alignment at L-elsbetiae_contig1907:13238..13834+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGAGGACAGGTGGCGCGGTGGGGTTTGGTATCGTAAGGGGCATGCT
GCTGTCTTTCGATCTCGGCGGCCCACTTTTGCGCGTTGAGCAAGAAAAAA
CGGCAATCTCGCGCTCCGTGCAATTCAATGCCATCCATCCCGGATCGGAT
GCAGGGGTCAGGTCAAGACTCGGTCGAGGCGCTCGGTCGCCACTTTTGGG
AAAATGCGACGGTATGTATGTATGGTCTCCACTCCGCCATGAATATGCGC
ACCCACGCGTGTGCCAGCCACTCTCAATATATCCTCCCAACGCCTCTTTT
CTGGGCGTGCGCGCTCTCTCTCTTCCTTTGGTGTTTGCAGGTGACGATCG
AGGAGCTAGACATCATCTGCCAAATACCGCATCACGTAGTGGTTTCCGCC
GCCCACGGGTGGAACATCGACGAGGTCAGGCGGCATTTCGATGCGATGCG
CGTCCGAGAGCTCCCCTCTACATTCGTACTTCATACATACGTGCATGTAT
ATATCTTTGTGTATTCTCAGCACCGCCGTGTTCGTTGTTCAAGTGCCACA
TAGCGGTTGCTGTTTGTTGGTCTCTCCCCCCCCCCCCCAGGGCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1907:13238..13834+

>mRNA_L-elsbetiae_contig1907.5616.1 ID=mRNA_L-elsbetiae_contig1907.5616.1|Name=mRNA_L-elsbetiae_contig1907.5616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig1907:13238..13834+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGAGGACAGGTGGCGCGGTGGGGTTTGGTATCGTAAGGGGCATGCT
GCTGTCTTTCGATCTCGGCGGCCCACTTTTGCGCGTTGAGCAAGAAAAAA
CGGCAATCTCGCGCTCCGTGCAATTCAATGCCATCCATCCCGGATCGGAT
GCAGGGGTCAGGTCAAGACTCGGTCGAGGCGCTCGGTCGCCACTTTTGGG
AAAATGCGACGGTATGTATGTATGGTCTCCACTCCGCCATGAATATGCGC
ACCCACGCGTGTGCCAGCCACTCTCAATATATCCTCCCAACGCCTCTTTT
CTGGGCGTGCGCGCTCTCTCTCTTCCTTTGGTGTTTGCAGGTGACGATCG
AGGAGCTAGACATCATCTGCCAAATACCGCATCACGTAGTGGTTTCCGCC
GCCCACGGGTGGAACATCGACGAGGTCAGGCGGCATTTCGATGCGATGCG
CGTCCGAGAGCTCCCCTCTACATTCGTACTTCATACATACGTGCATGTAT
ATATCTTTGTGTATTCTCAGCACCGCCGTGTTCGTTGTTCAAGTGCCACA
TAGCGGTTGCTGTTTGTTGGTCTCTCCCCCCCCCCCCCAGGGCTGGCGGT
GCGAGGACAGGTGGCGCGGTGGGGTTTGGTATCGTAAGGGGCATGCTGCT
GTCTTTCGATCTCGGCGGCCCACTTTTGCGCGTTGAGCAAGAAAAAACGG
CAATCTCGCGCTCCGTGCAATTCAATGCCATCCATCCCGGATCGGATGCA
GGGGTCAGGTCAAGACTCGGTCGAGGCGCTCGGTCGCCACTTTTGGGAAA
ATGCGACGGTATGTATGTATGGTCTCCACTCCGCCATGAATATGCGCACC
CACGCGTGTGCCAGCCACTCTCAATATATCCTCCCAACGCCTCTTTTCTG
GGCGTGCGCGCTCTCTCTCTTCCTTTGGTGTTTGCAGGTGACGATCGAGG
AGCTAGACATCATCTGCCAAATACCGCATCACGTAGTGGTTTCCGCCGCC
CACGGGTGGAACATCGACGAGGTCAGGCGGCATTTCGATGCGATGCGCGT
CCGAGAGCTCCCCTCTACATTCGTACTTCATACATACGTGCATGTATATA
TCTTTGTGTATTCTCAGCACCGCCGTGTTCGTTGTTCAAGTGCCACATAG
CGGTTGCTGTTTGTTGGTCTCTCCCCCCCCCCCCCAGGGCTGGC
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