mRNA_L-elsbetiae_contig1906.5611.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1906.5611.1
Unique NamemRNA_L-elsbetiae_contig1906.5611.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1906.5611.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.770e-10
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   16 RGPGRPRLSDRRGVPLG-------------GXXXXXNAYGEEMRPSGSSTVEIRLGFTGRRFVRLKLDNCPRPEA 201
            RGPGRPRL++RRGV  G              XXXX + YG E RP+ S TVE+RL FTG+R VRLKLDNCP  EA
Sbjct:  166 RGPGRPRLAERRGVSAGRGGSGSVGIVGXXXXXXXADPYGVERRPAWSGTVEVRLAFTGQRSVRLKLDNCPSSEA 240
[Close]
BLAST of mRNA_L-elsbetiae_contig1906.5611.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.580e-5
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  496 FFTPKPMAGPRPALARGGWASLTASTAAATF 588
            FFTP PMAGPRPALARGGWASL ASTAAATF
Sbjct:  501 FFTPTPMAGPRPALARGGWASLFASTAAATF 531
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1906.5611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK20_9PHAE1.770e-1057.33Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LN85_ECTSI2.580e-593.55Histone deacetylase superfamily n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1906contigL-elsbetiae_contig1906:3657..5386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistone deacetylase with CXXC-type zinc finger domain
Ec32 orthologEc-05_003910.1
Exons2
Model size927
Cds size927
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.5225384-CDS-L-elsbetiae_contig1906:3656..38841622815792.5225384-CDS-L-elsbetiae_contig1906:3656..3884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1906 3657..3884 +
1691683106.059546-CDS-L-elsbetiae_contig1906:3656..38841691683106.059546-CDS-L-elsbetiae_contig1906:3656..3884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1906 3657..3884 +
1622815792.534358-CDS-L-elsbetiae_contig1906:4687..53861622815792.534358-CDS-L-elsbetiae_contig1906:4687..5386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1906 4688..5386 +
1691683106.0695734-CDS-L-elsbetiae_contig1906:4687..53861691683106.0695734-CDS-L-elsbetiae_contig1906:4687..5386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1906 4688..5386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1906.5611.1prot_L-elsbetiae_contig1906.5611.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1906 3657..5386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1906.5611.1

>prot_L-elsbetiae_contig1906.5611.1 ID=prot_L-elsbetiae_contig1906.5611.1|Name=mRNA_L-elsbetiae_contig1906.5611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=309bp
GPSGPRGPGRPRLSDRRGVPLGGGGGGGNAYGEEMRPSGSSTVEIRLGFT
GRRFVRLKLDNCPRPEAGASAATAGQAGTAKDQVQDAEMADVKASSTPPR
TSVSAYEGEGREWGAEGGKVDAHSKQQQASTPTPAAPFTAAPAAGAATAV
VSGGGGGGGGGGARHFFTPKPMAGPRPALARGGWASLTASTAAATFVPPN
RHSGSSTGEVPENTGGGTGNVGRSSKNSNFKENGGGMSGGTAAAAVPVPK
QDASEAPALGSAAAATGSESWWVHRPVAVLSCLRELLLVSEKAPPPSSSS
SSPSSPLSS
back to top

mRNA from alignment at L-elsbetiae_contig1906:3657..5386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1906.5611.1 ID=mRNA_L-elsbetiae_contig1906.5611.1|Name=mRNA_L-elsbetiae_contig1906.5611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1730bp|location=Sequence derived from alignment at L-elsbetiae_contig1906:3657..5386+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCCTTCCGGGCCGCGGGGACCCGGGCGGCCCCGCCTGTCGGACCGCCG
CGGAGTGCCGCTGGGGGGCGGCGGCGGGGGGGGGAACGCGTACGGCGAAG
AGATGCGGCCGTCGGGGTCGAGTACAGTGGAGATTCGGCTGGGGTTCACA
GGCAGGCGCTTCGTGCGGCTCAAGTTGGACAACTGCCCGCGCCCGGAGGC
TGGTGCTTCTGCTGCCACGGCAGGACAGGTGCTTTGCCCGCTCCTCCTGT
CCTCCCCTCCATGCTGCATACCAAGTATCAACTGCTGCTGCTGCTGCCAC
AAGTACCTGTGGTACTTGCGACTCTTAGTGTTGTCGCGTGTTCCCAGCCT
TAAGTCTTCGGCACTGCTGTCAGCTGTTGGTTGGTTTTGAGCAAGGTGCC
ATCATTAAGTCGAGTATTCCTCACCTCCCCCGACAAGAGAAGAAACGAGA
GATACTACACGCAACATGCACTCCGCAAGCTGTGCTGTCTATTCTTCGGC
TGAATGTCTTATCGTTGTCACTGCTGGCCGTGGATTGGGCAGCTATCGTC
GTGAAAGCTGTGTGTATGTGCCAATAGTTGCCGGTACATACATGACCACC
CCGCCTCTCGCTTTATTTTGTTTTGCTGTCGATGAGGCGATCGATGTTGA
TTGGACCGAAGTCTTGTTTCTCTAAAAAGCACTGATTGTTGGATACTGTT
ACACCTCCGTCTACAACCCCGCGCTTGTGAAAAACAAAGCACACTTCCTG
TTCGTACAAACGAAGGGGGAATAATGTAGGCGGAACGGCGTTGCAAGCCC
GCCACCTATACTCTATCGTGTCACCTCGTATGTCGTTTTCACACATGAGC
TCTTCCGACAAGACTTGAGCGTAACGACTCCACCACAATGCAAACAAATA
TGGTATCACCGGGCCCCGAAAATCGAAGAGCGCCCGCCCGCAAGGGAAGG
TTCTCCGTTTCTCGTCGCTGGTTACCACACTGCTGTGCGACTCATAAAAT
ATCACCTGTGCCTTGTTCTACCTGCGCTCAGGCCGGCACCGCGAAAGACC
AAGTTCAAGACGCCGAAATGGCGGATGTTAAGGCTTCGAGTACCCCACCA
CGGACGTCGGTGTCTGCTTACGAAGGCGAAGGAAGGGAGTGGGGAGCGGA
AGGGGGGAAGGTTGATGCTCACAGCAAGCAACAACAGGCCTCCACCCCTA
CCCCTGCTGCTCCTTTCACAGCGGCACCAGCAGCTGGAGCGGCAACAGCG
GTAGTGTCTGGGGGTGGCGGTGGCGGCGGCGGCGGCGGTGCGAGGCATTT
CTTCACGCCGAAGCCTATGGCGGGACCTCGGCCGGCGCTGGCTAGGGGTG
GGTGGGCTTCCCTTACGGCCTCGACAGCGGCGGCGACGTTTGTTCCTCCC
AACCGCCATAGCGGCAGTAGCACCGGGGAGGTCCCGGAGAACACCGGCGG
AGGTACCGGCAACGTCGGCCGTAGCAGCAAAAACTCCAACTTCAAGGAGA
ACGGCGGCGGCATGAGCGGCGGTACGGCAGCTGCTGCCGTGCCCGTGCCG
AAGCAGGACGCGTCCGAGGCACCGGCTCTGGGAAGCGCGGCCGCAGCCAC
GGGGTCAGAATCTTGGTGGGTTCACCGCCCGGTGGCCGTGCTGAGTTGTC
TGCGCGAGCTTCTTTTGGTCTCGGAGAAAGCTCCACCTCCCTCGTCCTCC
TCGTCCTCGCCCTCGTCGCCGTTGTCGAGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1906:3657..5386+

>mRNA_L-elsbetiae_contig1906.5611.1 ID=mRNA_L-elsbetiae_contig1906.5611.1|Name=mRNA_L-elsbetiae_contig1906.5611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1854bp|location=Sequence derived from alignment at L-elsbetiae_contig1906:3657..5386+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCCTTCCGGGCCGCGGGGACCCGGGCGGCCCCGCCTGTCGGACCGCCG
CGGAGTGCCGCTGGGGGGCGGCGGCGGGGGGGGGAACGCGTACGGCGAAG
AGATGCGGCCGTCGGGGTCGAGTACAGTGGAGATTCGGCTGGGGTTCACA
GGCAGGCGCTTCGTGCGGCTCAAGTTGGACAACTGCCCGCGCCCGGAGGC
TGGTGCTTCTGCTGCCACGGCAGGACAGGGTCCTTCCGGGCCGCGGGGAC
CCGGGCGGCCCCGCCTGTCGGACCGCCGCGGAGTGCCGCTGGGGGGCGGC
GGCGGGGGGGGGAACGCGTACGGCGAAGAGATGCGGCCGTCGGGGTCGAG
TACAGTGGAGATTCGGCTGGGGTTCACAGGCAGGCGCTTCGTGCGGCTCA
AGTTGGACAACTGCCCGCGCCCGGAGGCTGGTGCTTCTGCTGCCACGGCA
GGACAGGCCGGCACCGCGAAAGACCAAGTTCAAGACGCCGAAATGGCGGA
TGTTAAGGCTTCGAGTACCCCACCACGGACGTCGGTGTCTGCTTACGAAG
GCGAAGGAAGGGAGTGGGGAGCGGAAGGGGGGAAGGTTGATGCTCACAGC
AAGCAACAACAGGCCTCCACCCCTACCCCTGCTGCTCCTTTCACAGCGGC
ACCAGCAGCTGGAGCGGCAACAGCGGTAGTGTCTGGGGGTGGCGGTGGCG
GCGGCGGCGGCGGTGCGAGGCATTTCTTCACGCCGAAGCCTATGGCGGGA
CCTCGGCCGGCGCTGGCTAGGGGTGGGTGGGCTTCCCTTACGGCCTCGAC
AGCGGCGGCGACGTTTGTTCCTCCCAACCGCCATAGCGGCAGTAGCACCG
GGGAGGTCCCGGAGAACACCGGCGGAGGTACCGGCAACGTCGGCCGTAGC
AGCAAAAACTCCAACTTCAAGGAGAACGGCGGCGGCATGAGCGGCGGTAC
GGCAGCTGCTGCCGTGCCCGTGCCGAAGCAGGACGCGTCCGAGGCACCGG
CTCTGGGAAGCGCGGCCGCAGCCACGGGGTCAGAATCTTGGTGGGTTCAC
CGCCCGGTGGCCGTGCTGAGTTGTCTGCGCGAGCTTCTTTTGGTCTCGGA
GAAAGCTCCACCTCCCTCGTCCTCCTCGTCCTCGCCCTCGTCGCCGTTGT
CGAGTGCCGGCACCGCGAAAGACCAAGTTCAAGACGCCGAAATGGCGGAT
GTTAAGGCTTCGAGTACCCCACCACGGACGTCGGTGTCTGCTTACGAAGG
CGAAGGAAGGGAGTGGGGAGCGGAAGGGGGGAAGGTTGATGCTCACAGCA
AGCAACAACAGGCCTCCACCCCTACCCCTGCTGCTCCTTTCACAGCGGCA
CCAGCAGCTGGAGCGGCAACAGCGGTAGTGTCTGGGGGTGGCGGTGGCGG
CGGCGGCGGCGGTGCGAGGCATTTCTTCACGCCGAAGCCTATGGCGGGAC
CTCGGCCGGCGCTGGCTAGGGGTGGGTGGGCTTCCCTTACGGCCTCGACA
GCGGCGGCGACGTTTGTTCCTCCCAACCGCCATAGCGGCAGTAGCACCGG
GGAGGTCCCGGAGAACACCGGCGGAGGTACCGGCAACGTCGGCCGTAGCA
GCAAAAACTCCAACTTCAAGGAGAACGGCGGCGGCATGAGCGGCGGTACG
GCAGCTGCTGCCGTGCCCGTGCCGAAGCAGGACGCGTCCGAGGCACCGGC
TCTGGGAAGCGCGGCCGCAGCCACGGGGTCAGAATCTTGGTGGGTTCACC
GCCCGGTGGCCGTGCTGAGTTGTCTGCGCGAGCTTCTTTTGGTCTCGGAG
AAAGCTCCACCTCCCTCGTCCTCCTCGTCCTCGCCCTCGTCGCCGTTGTC
GAGT
back to top