mRNA_L-elsbetiae_contig19033.5601.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19033.5601.1
Unique NamemRNA_L-elsbetiae_contig19033.5601.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19033.5601.1 vs. uniprot
Match: D7FQJ6_ECTSI (Early-responsive to dehydration protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ6_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.310e-14
Identity = 47/64 (73.44%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:    2 PRLSVDLINVDPVKELVKTTAQQTLETMRAKSRHYRSGKNGASKGAAGGYGTAAVIDARTPPKG 193
            PRLSVDLINVDPVKELVK TAQQTL TMRAKS HYR      ++GA  GYGTAAV    TPPKG
Sbjct:  565 PRLSVDLINVDPVKELVKMTAQQTLHTMRAKSLHYRR-----ARGA--GYGTAAVSGNHTPPKG 621
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19033.5601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ6_ECTSI1.310e-1473.44Early-responsive to dehydration protein-related n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19033contigL-elsbetiae_contig19033:1512..2429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.6700249-CDS-L-elsbetiae_contig19033:1511..15691622815791.6700249-CDS-L-elsbetiae_contig19033:1511..1569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19033 1512..1569 +
1691683105.5008826-CDS-L-elsbetiae_contig19033:1511..15691691683105.5008826-CDS-L-elsbetiae_contig19033:1511..1569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19033 1512..1569 +
1622815791.6801186-CDS-L-elsbetiae_contig19033:2083..24271622815791.6801186-CDS-L-elsbetiae_contig19033:2083..2427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19033 2084..2427 +
1691683105.5100164-CDS-L-elsbetiae_contig19033:2083..24271691683105.5100164-CDS-L-elsbetiae_contig19033:2083..2427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19033 2084..2427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19033.5601.1prot_L-elsbetiae_contig19033.5601.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19033 1512..2427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19033.5601.1

>prot_L-elsbetiae_contig19033.5601.1 ID=prot_L-elsbetiae_contig19033.5601.1|Name=mRNA_L-elsbetiae_contig19033.5601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
PAALGGPHQRRPRQGAGEDDRAANPGDDEGKVPSLPVGEERRLEGGRGGL
RNCRGDRRPHPPEGGRRWLLLQRRQQRVVVKHGQEARGRRRKRRRRRRSL
ADVDDSSGGSGSQRRHRWQQQQRLAEALVEPGGR
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mRNA from alignment at L-elsbetiae_contig19033:1512..2429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19033.5601.1 ID=mRNA_L-elsbetiae_contig19033.5601.1|Name=mRNA_L-elsbetiae_contig19033.5601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig19033:1512..2429+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCGGCTCTCGGTGGACCTCATCAACGTCGACCCCGTCAAGGAGCTGG
TGAAGACGGTGAGGGCAGAAACGTCCGCCCGGCTTGCTGTTCTCTCGCTC
CTCTGCGCACCTGAGAACCATTCCCTGTGCATCTCTCCATCGATCGATTA
ATCTGTCGGTCTTTCTTGACTGCTTTATATTCTCTCTCTCTCTCTCTCTC
TCTCTCTGTGTGTGTGTCTCTACGGCTACATAGGTGACTGAATGTGAACA
TCCCATTAGTTTTTCGGTTTCTCTCCTCTCTTCCTCCTTCCACTCTGTCC
GTTTTTTTTTGTTTTGTTTTTCACCCCCTACATAAGGTGCCCGCGCGCAC
CCAGATCCACACGCGGCCTTCCCCGGCATGAGACCACCAAAGGCGCCACG
CGCACACGCCGACACCCGCACAATCGCGACCTTGGTCTTGATCTCGCCGT
CGCCGTCACCGTCGCCGTCGCCCTTGCCTTGCCTTGTCTCCTCTCTTGCG
CGTATCGCCACCCTGTCTGCGTCCGGGCGCCCTCTCTCGCCCTCGTCCCA
CGGGTGAAACCGGCGGCGCCAGACCGCGCAGCAAACCCTGGAGACGATGA
GGGCAAAGTCCCGTCACTACCGGTCGGGGAAGAACGGCGCCTCGAAGGGG
GCCGCGGGGGGCTACGGAACTGCCGCGGTGATCGACGCCCGCACCCCCCC
GAAGGGGGGCGTCGTTGGCTCCTCCTCCAACGGCGGCAGCAACGGGTCGT
CGTCAAGCACGGACAAGAGGCCCGCGGGCGCAGGCGCAAGCGCAGGCGCC
GGCGCCGGTCTCTCGCCGATGTCGACGATAGTAGCGGGGGTTCCGGAAGT
CAGCGACGGCACCGGTGGCAGCAGCAGCAGCGGCTCGCGGAGGCTCTGGT
GGAGCCGGGCGGGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19033:1512..2429+

>mRNA_L-elsbetiae_contig19033.5601.1 ID=mRNA_L-elsbetiae_contig19033.5601.1|Name=mRNA_L-elsbetiae_contig19033.5601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig19033:1512..2429+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCGGCTCTCGGTGGACCTCATCAACGTCGACCCCGTCAAGGAGCTGG
TGAAGACGCCCGCGGCTCTCGGTGGACCTCATCAACGTCGACCCCGTCAA
GGAGCTGGTGAAGACGACCGCGCAGCAAACCCTGGAGACGATGAGGGCAA
AGTCCCGTCACTACCGGTCGGGGAAGAACGGCGCCTCGAAGGGGGCCGCG
GGGGGCTACGGAACTGCCGCGGTGATCGACGCCCGCACCCCCCCGAAGGG
GGGCGTCGTTGGCTCCTCCTCCAACGGCGGCAGCAACGGGTCGTCGTCAA
GCACGGACAAGAGGCCCGCGGGCGCAGGCGCAAGCGCAGGCGCCGGCGCC
GGTCTCTCGCCGATGTCGACGATAGTAGCGGGGGTTCCGGAAGTCAGCGA
CGGCACCGGTGGCAGCAGCAGCAGCGGCTCGCGGAGGCTCTGGTGGAGCC
GGGCGGGAGGACCGCGCAGCAAACCCTGGAGACGATGAGGGCAAAGTCCC
GTCACTACCGGTCGGGGAAGAACGGCGCCTCGAAGGGGGCCGCGGGGGGC
TACGGAACTGCCGCGGTGATCGACGCCCGCACCCCCCCGAAGGGGGGCGT
CGTTGGCTCCTCCTCCAACGGCGGCAGCAACGGGTCGTCGTCAAGCACGG
ACAAGAGGCCCGCGGGCGCAGGCGCAAGCGCAGGCGCCGGCGCCGGTCTC
TCGCCGATGTCGACGATAGTAGCGGGGGTTCCGGAAGTCAGCGACGGCAC
CGGTGGCAGCAGCAGCAGCGGCTCGCGGAGGCTCTGGTGGAGCCGGGCGG
GAGG
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