mRNA_L-elsbetiae_contig19018.5598.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19018.5598.1
Unique NamemRNA_L-elsbetiae_contig19018.5598.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19018.5598.1 vs. uniprot
Match: D7FS69_ECTSI (Vps16_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS69_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.150e-32
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 2 
Query:  233 QMSAKDPVVPTLRMCNCAGGAISETQLDRAAQAPGTASERGRLVTMGWTDGEMLVMVRERGGVEVRDIM 439
            +MSAKD +VPTLR+CNCAGG ISET LD+A QAPGTASERGRL+TMGWTDGEMLVMVRERGGVEVRDIM
Sbjct:   57 KMSAKDSIVPTLRVCNCAGGTISETILDKAVQAPGTASERGRLLTMGWTDGEMLVMVRERGGVEVRDIM 125
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BLAST of mRNA_L-elsbetiae_contig19018.5598.1 vs. uniprot
Match: A0A6H5KVY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 7.640e-31
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 2 
Query:  233 QMSAKDPVVPTLRMCNCAGGAISETQLDRAAQAPGTASERGRLVTMGWTDGEMLVMVRERGGVEVRDIM 439
            +MSAKD +VPTLR+CNCAGG ISET+LD+A QAPGTASERGRL+TMGWTDGEMLVMVRERGGVEVRDIM
Sbjct:   10 KMSAKDSIVPTLRVCNCAGGTISETRLDKAVQAPGTASERGRLLTMGWTDGEMLVMVRERGGVEVRDIM 78
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19018.5598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS69_ECTSI1.150e-3286.96Vps16_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KVY1_9PHAE7.640e-3186.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19018contigL-elsbetiae_contig19018:2339..2777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue9.1e-27
Seed eggNOG ortholog2880.D7FS69
KEGG koko:K20180
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0006810,GO:0006886,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0009790,GO:0009792,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0030897,GO:0031090,GO:0031338,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035295,GO:0035542,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048565,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055123,GO:0060627,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0099023
EggNOG free text desc.regulation of vacuole fusion, non-autophagic
EggNOG OGsKOG2280@1,KOG2280@2759
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 16
Ec32 orthologEc-01_000770.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size439
Cds size204
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.2752428-UTR-L-elsbetiae_contig19018:2338..25731622815791.2752428-UTR-L-elsbetiae_contig19018:2338..2573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19018 2339..2573 +
1691683105.206559-UTR-L-elsbetiae_contig19018:2338..25731691683105.206559-UTR-L-elsbetiae_contig19018:2338..2573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19018 2339..2573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.2886012-CDS-L-elsbetiae_contig19018:2573..27771622815791.2886012-CDS-L-elsbetiae_contig19018:2573..2777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19018 2574..2777 +
1691683105.2213001-CDS-L-elsbetiae_contig19018:2573..27771691683105.2213001-CDS-L-elsbetiae_contig19018:2573..2777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19018 2574..2777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19018.5598.1prot_L-elsbetiae_contig19018.5598.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19018 2574..2777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19018.5598.1

>prot_L-elsbetiae_contig19018.5598.1 ID=prot_L-elsbetiae_contig19018.5598.1|Name=mRNA_L-elsbetiae_contig19018.5598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MSAKDPVVPTLRMCNCAGGAISETQLDRAAQAPGTASERGRLVTMGWTDG
EMLVMVRERGGVEVRDIM
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mRNA from alignment at L-elsbetiae_contig19018:2339..2777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19018.5598.1 ID=mRNA_L-elsbetiae_contig19018.5598.1|Name=mRNA_L-elsbetiae_contig19018.5598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=439bp|location=Sequence derived from alignment at L-elsbetiae_contig19018:2339..2777+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGGTGGTGCTGCAGTCAGCGCATGTTGTGGCATTTCCTTCAACGAAAA
GAGTGAGAACCACAGCACCACACACCGCCGTGGCTGTGTACGTATGTGAC
CACCAAAGATAACACAGAACGCCCGCTAACTCGCACAGCGAAATGCCTTG
CTTTCGCCTGGCTTTCGCCTTGCTTTCGCCTTGCTCTCGCCTTGCGCTTT
CGACCCCTCCCAAACCAAACCTAACCTAACCTCAGATGTCCGCAAAGGAC
CCCGTCGTCCCGACCCTGCGGATGTGCAACTGCGCCGGCGGGGCTATCTC
GGAAACCCAGCTCGACAGGGCGGCCCAGGCGCCCGGCACGGCGTCCGAGC
GGGGGCGGCTTGTGACCATGGGATGGACGGACGGAGAGATGCTGGTCATG
GTCAGGGAGAGGGGTGGGGTCGAGGTTCGAGACATCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19018:2339..2777+

>mRNA_L-elsbetiae_contig19018.5598.1 ID=mRNA_L-elsbetiae_contig19018.5598.1|Name=mRNA_L-elsbetiae_contig19018.5598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig19018:2339..2777+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGCAAAGGACCCCGTCGTCCCGACCCTGCGGATGTGCAACTGCGC
CGGCGGGGCTATCTCGGAAACCCAGCTCGACAGGGCGGCCCAGGCGCCCG
GCACGGCGTCCGAGCGGGGGCGGCTTGTGACCATGGGATGGACGGACGGA
GAGATGCTGGTCATGGTCAGGGAGAGGGGTGGGGTCGAGGTTCGAGACAT
CATGATGTCCGCAAAGGACCCCGTCGTCCCGACCCTGCGGATGTGCAACT
GCGCCGGCGGGGCTATCTCGGAAACCCAGCTCGACAGGGCGGCCCAGGCG
CCCGGCACGGCGTCCGAGCGGGGGCGGCTTGTGACCATGGGATGGACGGA
CGGAGAGATGCTGGTCATGGTCAGGGAGAGGGGTGGGGTCGAGGTTCGAG
ACATCATG
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