mRNA_L-elsbetiae_contig190.5589.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig190.5589.1
Unique NamemRNA_L-elsbetiae_contig190.5589.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig190.5589.1 vs. uniprot
Match: A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.980e-48
Identity = 108/188 (57.45%), Postives = 119/188 (63.30%), Query Frame = 2 
Query:   23 FMAWSSVHGGRLMLVKDLVYACLAEFGMRPAKATQEREVIQEIFRRHEASLKDSDG--FPFGPEGTAWAVVNARWWAQWKDYSRIGSEVTVPRGSLSRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------PXXXXXXXXXXXSSMGPTMAARSRASSRVFGSTPVLGGRGN 547
            FMAWSSVHGGRLMLVKDLVYACLAEFGM+PAKA QEREVI EIFRRH+ +L D +G   P+GP GT WAV+NARW A W+DY RIG + T+PRGSLSR S       XXXXXXXXX                                           SS+GPTM  RSRASSRVFGS PVLGGRG+
Sbjct:  565 FMAWSSVHGGRLMLVKDLVYACLAEFGMQPAKAVQEREVIHEIFRRHDVALDDGEGEGLPYGPVGTTWAVINARWLAGWRDYVRIGFDATMPRGSLSRVSSNSSIASXXXXXXXXXRQGPPATVAGAGVRSGTVANGRASGGGVGGDSSGLNRPSPPPPSSIGPTMTPRSRASSRVFGSAPVLGGRGH 752
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BLAST of mRNA_L-elsbetiae_contig190.5589.1 vs. uniprot
Match: D8LR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR49_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.440e-42
Identity = 131/177 (74.01%), Postives = 142/177 (80.23%), Query Frame = 2 
Query:   56 LMLVKDLVYACLAEFGMRPAKATQEREVIQEIFRRHEASLKDSDG--FPFGPEGTAWAVVNARWWAQWKDYSRIGSEVTVPRGSLSRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXX-----------SSMGPTMAARSRASSRVFGSTPVLGGRGN 547
            LMLVKDLVYACLAEFGMRPAKA QEREVI EIFRRH+ +L D +G   P+GP GT WAV+NA+WWAQW+DY RIG + T+PRGSLSR S      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX           SS+GPTM  RSRASSRVFGS PVLGGRG+
Sbjct:  514 LMLVKDLVYACLAEFGMRPAKAVQEREVIHEIFRRHDVALDDGEGEGLPYGPVGTTWAVINAQWWAQWRDYVRIGFDATMPRGSLSRVSSNSSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSIGPTMTPRSRASSRVFGSAPVLGGRGH 690
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BLAST of mRNA_L-elsbetiae_contig190.5589.1 vs. uniprot
Match: A0A835YVN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.790e-18
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:    5 GLTFAGFMAWSSVHGGRLMLVKDLVYACLAEFGMRPAKATQEREVIQEIFRRHEASL-KDSDGFPFGPEGTAWAVVNARWWAQWKDYSRI 271
            GLTFAG+MAWS+ H GR+ L+ DL +  +AE GMRPA A QER+V+ E  R+++A   ++   F +G  GT W +++  WW +W  Y+R 
Sbjct:  524 GLTFAGYMAWSAAHPGRMQLLHDLAFIAIAECGMRPATAAQERDVVSEHMRQYDALHGREVPLFRYGAVGTPWNLIDQVWWNRWCAYARF 613
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig190.5589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLB3_9PHAE2.980e-4857.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR49_ECTSI2.440e-4274.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVN1_9STRA8.790e-1845.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig190contigL-elsbetiae_contig190:7781..9998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue3.8e-37
Seed eggNOG ortholog2880.D8LR49
KEGG koko:K11837
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons3
Model size548
Cds size522
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig190.5589.1prot_L-elsbetiae_contig190.5589.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig190 7781..9973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.0648823-CDS-L-elsbetiae_contig190:7780..80381622815790.0648823-CDS-L-elsbetiae_contig190:7780..8038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 7781..8038 -
1691683104.3457627-CDS-L-elsbetiae_contig190:7780..80381691683104.3457627-CDS-L-elsbetiae_contig190:7780..8038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 7781..8038 -
1622815790.0789492-CDS-L-elsbetiae_contig190:8720..88501622815790.0789492-CDS-L-elsbetiae_contig190:8720..8850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 8721..8850 -
1691683104.3594465-CDS-L-elsbetiae_contig190:8720..88501691683104.3594465-CDS-L-elsbetiae_contig190:8720..8850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 8721..8850 -
1622815790.0898523-CDS-L-elsbetiae_contig190:9839..99731622815790.0898523-CDS-L-elsbetiae_contig190:9839..9973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 9840..9973 -
1691683104.3679385-CDS-L-elsbetiae_contig190:9839..99731691683104.3679385-CDS-L-elsbetiae_contig190:9839..9973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 9840..9973 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.0995986-UTR-L-elsbetiae_contig190:9973..99981622815790.0995986-UTR-L-elsbetiae_contig190:9973..9998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig190 9974..9998 -
1691683104.378-UTR-L-elsbetiae_contig190:9973..99981691683104.378-UTR-L-elsbetiae_contig190:9973..9998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig190 9974..9998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig190.5589.1

>prot_L-elsbetiae_contig190.5589.1 ID=prot_L-elsbetiae_contig190.5589.1|Name=mRNA_L-elsbetiae_contig190.5589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MAWSSVHGGRLMLVKDLVYACLAEFGMRPAKATQEREVIQEIFRRHEASL
KDSDGFPFGPEGTAWAVVNARWWAQWKDYSRIGSEVTVPRGSLSRASSSS
SITSNGGGGSGSSHQQPASALTGATAAAAAAGTPAITPPSPTPPPSSMGP
TMAARSRASSRVFGSTPVLGGRGN
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mRNA from alignment at L-elsbetiae_contig190:7781..9998-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig190.5589.1 ID=mRNA_L-elsbetiae_contig190.5589.1|Name=mRNA_L-elsbetiae_contig190.5589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2218bp|location=Sequence derived from alignment at L-elsbetiae_contig190:7781..9998- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGGCTGACGTTTGCCGGGTTCATGGCGTGGTCGAGCGTGCACGGGG
GCAGGCTCATGCTGGTGAAGGACCTCGTGTACGCGTGCCTTGCCGAGTTC
GGCATGCGGCCCGCCAAGGCGACGCAGGAGAGAGAGGTCATCCAGGAGAT
ATTCAGAAGGTGTGCGCGCGCGCTTGGGGGGGCAGCGGGCAGGCGGCGGC
GGTGGCGGCGGGGGTGGCTATTTTTATCCGCCACAAATCTGTGGTTTTGT
GTTGTTGTGCTTGGTGTGAGTTGGTGCGTTTTTTCTCCCGTACCGGGATA
CAGCAGTGTGGTGGTGCGTTTGGTGTGGTGGTTCTGGCCAATATTTTCGC
AGACACTCACCTGCCCTGACTTCCGCAGGTGAAGGCTTTTCACGTAAGGT
CTTGCACAGTGAGAGGGGAGGAAGGTGGTGCCCCCTAAAGTGGTGTGGGG
GAGGAAGGGAGGGGAGGGGTTGGTGTGGTTGTGGTGAATGCTGGGTGGCG
TTGTCGGGCGTGGCGCCGGGGCCCTTACCAGGGTTTTGGGTGTTATTTAC
GTAGCCGTCTTGTTATTCTGTTGTGTTTTTGCTGCTGCTCGACGACGGCC
AACCCAACGCGCGATAGAGCTTCCCGCCTCTCGGCCCTTCTTCCATACAA
CCCGGTTCGGTTTGACCAACGCGTAGTACCACAGCGAAGTACATCTACGA
AGACGAAACCCCTACGAAGTTCTTCGCGCTGCCCGCTTGTGGCATGGCTT
GGGGAGGGAACAACACGCACAATTTGCCCGGGCAGCCATTAGATTCTCGC
GCTTTTTTCCGCCTTATACCTTGCGTAGGTACGATACGACGCTTCCTACG
TCTCTTTCGTCCTCTTCTCTCTTCTTGGTCCGGAAACCCATCCTCCCCCC
CTGCCAGCACGTGTCTTTTTCTTGCTCTCTGTGTGCCCCCCCGCCACCCC
CCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTCCCCTCCTGGTCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCGCGAACGCGGTTCGCTTGCCCCA
CGATTTTATCCTCACTGCTGTTTTGTGATTTGCGGCTTGCGCGCTTGTGT
GTTTCAACGCCCACACCTACGTGTGTATGGATGGCTGCCGTTCTGAAGGC
ACGAGGCCTCTCTGAAGGACTCGGACGGCTTTCCGTTCGGGCCCGAGGGT
ACCGCCTGGGCGGTGGTCAACGCGCGCTGGTGGGCGCAGTGGAAGGACTA
CTCCCGCATCGGCTCCGAGGTTACCGTGGTGAGACGAGGGAAGGGGGGGG
AGGGGGGGGGGCCGCGAGGATTCCGACGGAGGAGAGCAGGTAGTGCACGA
CACTTGTGATGTTTTTCAGGATCTACTTTCATGTGCGTAGGTCGGCGTGT
TGTAGAGACTGTTTTGTTCCCCGAGAAATGTCATCGAGGGTTGTGGTGCG
CTCCTTCCTTCCTGGCTGTGTTTGCTCCACCGCTCTCTTTTGTGGGGTGC
TTGTGCATGTGTGGGTGTGGTGTGTGTGTGGGGGAGGGAGGTTACCAAGT
TGTGGTGTTGATCCGATCTTTCGACGAATGTCTACAAATATCAGCGGTCT
ACGGTCCAACTTGTATCTGTTTTTGGAGGCCGTTGGTCAAATAATCTGAA
GAGAGTTGTCGTGCGCATGCATGCAGGTGTGATGCAGGAAAACGATGTGC
GTGTTTATCTACGCCGATGGGGGCAAGGCTATCAAGCGCGACCACAGCTA
GTAGAGCGTGCTCCCCTGGCTGGCCTTAAGTCGCTGACGAGAGAGCGTCT
GGGCGCGCCGGGATTGTCTAGGAAAATGACGGGAAAACGGTGTTGCTAAA
AGACGACAGGACACCAGGAACAAAATCATAACGCCTCCCCCGTTTTCCTT
TCGGGCCCCTTCTTATCGTCGTATGTCTACCGTCAACGCTCATTTTATTG
GAACGCCTAGCCCCGAGGAAGCCTGAGCCGTGCCAGCAGCAGCAGCAGTA
TCACGTCCAACGGGGGCGGCGGCAGCGGTAGCAGCCACCAGCAGCCCGCC
TCCGCCCTCACCGGGGCTACCGCCGCCGCCGCCGCCGCCGGGACCCCCGC
TATCACCCCGCCCTCGCCCACTCCACCGCCTTCTTCGATGGGGCCGACGA
TGGCGGCAAGGTCGAGAGCGAGCTCGCGGGTCTTTGGATCCACCCCCGTG
CTAGGCGGCAGGGGCAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig190:7781..9998-

>mRNA_L-elsbetiae_contig190.5589.1 ID=mRNA_L-elsbetiae_contig190.5589.1|Name=mRNA_L-elsbetiae_contig190.5589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig190:7781..9998- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTGGTCGAGCGTGCACGGGGGCAGGCTCATGCTGGTGAAGGACCT
CGTGTACGCGTGCCTTGCCGAGTTCGGCATGCGGCCCGCCAAGGCGACGC
AGGAGAGAGAGGTCATCCAGGAGATATTCAGAAGATGGCGTGGTCGAGCG
TGCACGGGGGCAGGCTCATGCTGGTGAAGGACCTCGTGTACGCGTGCCTT
GCCGAGTTCGGCATGCGGCCCGCCAAGGCGACGCAGGAGAGAGAGGTCAT
CCAGGAGATATTCAGAAGGCACGAGGCCTCTCTGAAGGACTCGGACGGCT
TTCCGTTCGGGCCCGAGGGTACCGCCTGGGCGGTGGTCAACGCGCGCTGG
TGGGCGCAGTGGAAGGACTACTCCCGCATCGGCTCCGAGGTTACCGTGGC
ACGAGGCCTCTCTGAAGGACTCGGACGGCTTTCCGTTCGGGCCCGAGGGT
ACCGCCTGGGCGGTGGTCAACGCGCGCTGGTGGGCGCAGTGGAAGGACTA
CTCCCGCATCGGCTCCGAGGTTACCGTGCCCCGAGGAAGCCTGAGCCGTG
CCAGCAGCAGCAGCAGTATCACGTCCAACGGGGGCGGCGGCAGCGGTAGC
AGCCACCAGCAGCCCGCCTCCGCCCTCACCGGGGCTACCGCCGCCGCCGC
CGCCGCCGGGACCCCCGCTATCACCCCGCCCTCGCCCACTCCACCGCCTT
CTTCGATGGGGCCGACGATGGCGGCAAGGTCGAGAGCGAGCTCGCGGGTC
TTTGGATCCACCCCCGTGCTAGGCGGCAGGGGCAATCCCCGAGGAAGCCT
GAGCCGTGCCAGCAGCAGCAGCAGTATCACGTCCAACGGGGGCGGCGGCA
GCGGTAGCAGCCACCAGCAGCCCGCCTCCGCCCTCACCGGGGCTACCGCC
GCCGCCGCCGCCGCCGGGACCCCCGCTATCACCCCGCCCTCGCCCACTCC
ACCGCCTTCTTCGATGGGGCCGACGATGGCGGCAAGGTCGAGAGCGAGCT
CGCGGGTCTTTGGATCCACCCCCGTGCTAGGCGGCAGGGGCAAT
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