mRNA_L-elsbetiae_contig1899.5578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1899.5578.1
Unique NamemRNA_L-elsbetiae_contig1899.5578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1899.5578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1899contigL-elsbetiae_contig1899:22096..22425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size332
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.4884353-CDS-L-elsbetiae_contig1899:22095..224131622815788.4884353-CDS-L-elsbetiae_contig1899:22095..22413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1899 22096..22413 +
1691683103.2307146-CDS-L-elsbetiae_contig1899:22095..224131691683103.2307146-CDS-L-elsbetiae_contig1899:22095..22413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1899 22096..22413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.5053651-UTR-L-elsbetiae_contig1899:22413..224251622815788.5053651-UTR-L-elsbetiae_contig1899:22413..22425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1899 22414..22425 +
1691683103.2402961-UTR-L-elsbetiae_contig1899:22413..224251691683103.2402961-UTR-L-elsbetiae_contig1899:22413..22425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1899 22414..22425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1899.5578.1prot_L-elsbetiae_contig1899.5578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1899 22096..22413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1899.5578.1

>prot_L-elsbetiae_contig1899.5578.1 ID=prot_L-elsbetiae_contig1899.5578.1|Name=mRNA_L-elsbetiae_contig1899.5578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
LFGSRSSAFLYPRPPARARAQILTGRSRCCCVPQYGLLIVVVVVVVFTLK
TVPISLSSASTFVRTNLVHSDAVDSRGHTLLTEPILDYFPPSHRCCTSLL
HPPEE*
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mRNA from alignment at L-elsbetiae_contig1899:22096..22425+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1899.5578.1 ID=mRNA_L-elsbetiae_contig1899.5578.1|Name=mRNA_L-elsbetiae_contig1899.5578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig1899:22096..22425+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTTCGGCAGTCGTTCTTCCGCCTTCCTTTACCCCCGCCCGCCCGCGCG
CGCGCGCGCGCAGATATTGACTGGTCGCAGCCGCTGCTGCTGTGTACCCC
AGTATGGATTGTTGATTGTTGTTGTTGTTGTTGTTGTGTTCACATTAAAA
ACCGTTCCGATTTCTCTCTCCAGTGCCTCCACATTTGTCCGTACTAATCT
AGTCCACTCTGACGCAGTCGATTCCCGTGGTCACACGCTCCTAACTGAAC
CAATCCTTGATTATTTTCCCCCTTCCCATCGTTGTTGTACCAGCCTGCTG
CACCCACCGGAGGAGTGACTTATTTTGTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1899:22096..22425+

>mRNA_L-elsbetiae_contig1899.5578.1 ID=mRNA_L-elsbetiae_contig1899.5578.1|Name=mRNA_L-elsbetiae_contig1899.5578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1899:22096..22425+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTTCGGCAGTCGTTCTTCCGCCTTCCTTTACCCCCGCCCGCCCGCGCG
CGCGCGCGCGCAGATATTGACTGGTCGCAGCCGCTGCTGCTGTGTACCCC
AGTATGGATTGTTGATTGTTGTTGTTGTTGTTGTTGTGTTCACATTAAAA
ACCGTTCCGATTTCTCTCTCCAGTGCCTCCACATTTGTCCGTACTAATCT
AGTCCACTCTGACGCAGTCGATTCCCGTGGTCACACGCTCCTAACTGAAC
CAATCCTTGATTATTTTCCCCCTTCCCATCGTTGTTGTACCAGCCTGCTG
CACCCACCGGAGGAGTGACTTTTCGGCAGTCGTTCTTCCGCCTTCCTTTA
CCCCCGCCCGCCCGCGCGCGCGCGCGCGCAGATATTGACTGGTCGCAGCC
GCTGCTGCTGTGTACCCCAGTATGGATTGTTGATTGTTGTTGTTGTTGTT
GTTGTGTTCACATTAAAAACCGTTCCGATTTCTCTCTCCAGTGCCTCCAC
ATTTGTCCGTACTAATCTAGTCCACTCTGACGCAGTCGATTCCCGTGGTC
ACACGCTCCTAACTGAACCAATCCTTGATTATTTTCCCCCTTCCCATCGT
TGTTGTACCAGCCTGCTGCACCCACCGGAGGAGTGA
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