mRNA_L-elsbetiae_contig1897.5574.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1897.5574.1
Unique NamemRNA_L-elsbetiae_contig1897.5574.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Match: A0A6H5JPS6_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 9.540e-39
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 3 
Query:    3 TVENIFDFSFFVKSGEGHISIDEETKLPQAKFTHILSGEDNAPPQKS---QQWLMSFTKADFDELKELYNMEGSHIPHRNDGPRSDYYDPLRDGNRESNRQ 296
            TVEN+FDFSFFVKSGEGHI+ID ETKLPQ KF       D APP  S   +QWLMSFT ADF ELKELY ME S+  HR++GP+SDYYDPL  GNRESNRQ
Sbjct:   14 TVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTPSGD-APPAASGDAKQWLMSFTPADFRELKELYGMEESNFEHRSEGPKSDYYDPLTHGNRESNRQ 113
[Close]
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.880e-34
Identity = 70/101 (69.31%), Postives = 77/101 (76.24%), Query Frame = 3 
Query:    3 TVENIFDFSFFVKSGEGHISIDEETKLPQAKFTHILSGEDNAPPQKS---QQWLMSFTKADFDELKELYNMEGSHIPHRNDGPRSDYYDPLRDGNRESNRQ 296
            TVEN+FDFSFFVK GEGHI+ID ETKLPQ KF       D APP  S   +QWLMSFT ADF ELKELY ME S+  HR++GP+SDYYDPL  GNRESNRQ
Sbjct:  346 TVENLFDFSFFVKRGEGHITIDPETKLPQVKFDPSTQSGD-APPAASGDAKQWLMSFTPADFRELKELYGMEESNFEHRSEGPKSDYYDPLTHGNRESNRQ 445
[Close]
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Match: A0A835YSI9_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.950e-14
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 3 
Query:    3 TVENIFDFSFFVKSGEGHISIDEETKLPQAKFTHILSGEDNAPPQKSQQWLMSFTKADFDELKELYNMEGSH--IPHRNDGPRSDYYDPLRD 272
            TVEN+FDF+F++K+G   +++D+E      +FT ILS +D A    ++Q ++SFT+ DF  L EL  +EG    IP R  G  SDYYDPL D
Sbjct:  277 TVENMFDFTFYIKNGLTGLAVDKEAGKLNTQFTRILSQDDAASRSSNKQSVLSFTRQDFKNLIELCGLEGQEPMIPARPMGAGSDYYDPLVD 368
[Close]
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Match: A0A835Z541_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z541_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.140e-12
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 3 
Query:    3 TVENIFDFSFFVKSGEGHISIDEETKLPQAKFTHILSGEDNAPPQ-KSQQWLMSFTKADFDELKELYNMEGSH--IPHRNDGPRSDYYDPL 266
            TVEN+FDF+ F+K G   +S+D E     A+FT IL+ +D A  + K++Q ++SFTK DF +L EL  +EG    IP R     SDYYDPL
Sbjct:  203 TVENMFDFTDFIKHGLTGLSVDTEAGTLNAQFTRILTQDDAAAARSKNKQAVLSFTKQDFVDLIELCGLEGQEPTIPDRRTVDGSDYYDPL 293
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JPS6_9PHAE9.540e-3970.30Non-structural maintenance of chromosomes element ... [more]
D7G069_ECTSI1.880e-3469.31Non-structural maintenance of chromosomes element ... [more]
A0A835YSI9_9STRA9.950e-1445.65Non-structural maintenance of chromosomes element ... [more]
A0A835Z541_9STRA4.140e-1247.25Non-structural maintenance of chromosomes element ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1897contigL-elsbetiae_contig1897:8963..11546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue7.6e-12
Seed eggNOG ortholog2880.D7G069
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
EggNOG free text desc.DNA repair
EggNOG OGsCOG5125@1,KOG2866@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size449
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1897.5574.1prot_L-elsbetiae_contig1897.5574.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1897 10481..11396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.2740846-UTR-L-elsbetiae_contig1897:8962..90331622815788.2740846-UTR-L-elsbetiae_contig1897:8962..9033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 8963..9033 +
1691683103.1039772-UTR-L-elsbetiae_contig1897:8962..90331691683103.1039772-UTR-L-elsbetiae_contig1897:8962..9033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 8963..9033 +
1622815788.286294-UTR-L-elsbetiae_contig1897:10396..104801622815788.286294-UTR-L-elsbetiae_contig1897:10396..10480Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 10397..10480 +
1691683103.1143057-UTR-L-elsbetiae_contig1897:10396..104801691683103.1143057-UTR-L-elsbetiae_contig1897:10396..10480Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 10397..10480 +
1622815788.3262122-UTR-L-elsbetiae_contig1897:11396..115461622815788.3262122-UTR-L-elsbetiae_contig1897:11396..11546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 11397..11546 +
1691683103.1480348-UTR-L-elsbetiae_contig1897:11396..115461691683103.1480348-UTR-L-elsbetiae_contig1897:11396..11546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 11397..11546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.300066-CDS-L-elsbetiae_contig1897:10480..104961622815788.300066-CDS-L-elsbetiae_contig1897:10480..10496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 10481..10496 +
1691683103.1263-CDS-L-elsbetiae_contig1897:10480..104961691683103.1263-CDS-L-elsbetiae_contig1897:10480..10496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 10481..10496 +
1622815788.3141124-CDS-L-elsbetiae_contig1897:11268..113961622815788.3141124-CDS-L-elsbetiae_contig1897:11268..11396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 11269..11396 +
1691683103.1382146-CDS-L-elsbetiae_contig1897:11268..113961691683103.1382146-CDS-L-elsbetiae_contig1897:11268..11396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 11269..11396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1897.5574.1

>prot_L-elsbetiae_contig1897.5574.1 ID=prot_L-elsbetiae_contig1897.5574.1|Name=mRNA_L-elsbetiae_contig1897.5574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
MSFTKADFDELKELYNMEGSHIPHRNDGPRSDYYDPLRDGNRESNRQ*
back to top

mRNA from alignment at L-elsbetiae_contig1897:8963..11546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1897.5574.1 ID=mRNA_L-elsbetiae_contig1897.5574.1|Name=mRNA_L-elsbetiae_contig1897.5574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2584bp|location=Sequence derived from alignment at L-elsbetiae_contig1897:8963..11546+ (Laminarionema elsbetiae ELsaHSoW15)
AGACCGTCGAGAACATTTTCGACTTCTCTTTCTTCGTCAAGAGCGGAGAG
GGACACATCTCTATCGACGAGGTCAGTTCTTGCGTCATGCTTATACATAT
GTGAATGTATGTATGCTGTCTTCACATTAAAAACCGTTGCGATCTCTCCA
TCCAGTATGTACACCTCTCAATGTCCGTACTACTCCAACACTTGATGCGG
TCAATTCCCGTGGTCACAGGCTAACTTTATACCGAAGAAAAGGTACACGA
AAAATAAAATGGACCCCGAAGGGCCAGCAAAGCAACAATAAATACACTTC
GTATCTACGTAATTTTACACCCACGGCTTGACTCTGTTTTTTTTTTTTCT
TCTTCTTGACATTAATTTCCAGTGCTCGATGGGGCTCTTTGCCACGAGGG
CATCTTGCCAGAGTACTGAACCGTGGTCACACAGAAGGGTTCCTTCCCCC
GAGGCCCCCACTCCCCCCCTTCTGCGGTGCTTGCCTAAGTTTTTTAATGG
ATGTAGACAGTCCCGTTGACAGTCCCGTTGACAGCCCCCATTCCCCCCTT
CTGCGGTTGCTCGCCTAACATTTTTGTCGCGAGAAGGGTTCAGCCGTTTT
CCTTTTCCCTCGTCGACGGTGAGGTCGAAGGTTGTGTATATTCTGCTGCG
GAGAGAAAATCGCACCGGTTTTCTAGGTGGAATATTTCTGGGCAAAACGA
CGACCCTTACATATGCACGCCTGCCCAAACGAAAACACGCCCGAGGCTCA
CCTTGTGCCAGGCGCTCGCTCGGTTTTGTGTCCAGGTCGGATGGGCTGAG
GTCGATGTCGATGTCGATGTCGATGCCCCACGTTCAAGGCTGGCAAGAAA
ACCTGTCGAAAGTTTTTTTATTGTAGATATGTATAACTTGTCTCTTTTAT
CCCCCGAGACGTGCGGCAGTTTCCTTTGGGCGTAAAAGGAGTAAATATTA
TAGTATGTATGTATGTATGTATGTTTGTATGTACGTGCCTGTTCCCCCCG
TTGTTGCGGAGGATGTTTATTCGTTTTCAGCGGGAGAGGTTACTGATTTT
GGTGCTCGCCTCTCTCAAGTTTTGAGGCAAATGACCACACGCACACCTTT
CGGTCGCCCTGTATATATTTTGGGAGGTTCGCCATTGCGTTCGAGACTCG
CCCCCCCAACCGCTGTTTTGTGTCGCGGGAGGGACAAGAGGATTAAAAAC
AGCTGTTGTGCCCCAAACCGTCTTACTTTTTGCTCTGCACTCCTGTCTGT
TTTTTTCGGTTCTAATTTACGGGATATTAAAATATGTTTTCCTTTTTTTT
TCCACGTCTTCATGGCATCAATTTGAGCATGTGCGATGGGTTCCTGCACA
ACAGCAGTAGTCTAGTCGCGATTGATGGCATGCCAAACCTCCCCAATCGC
TCCCCCGTGCTGTTTCTTTCGCTTTTCTATCCAGGAGACCAAACTTCCCC
AGGCTAAGTTCACCCATATTCTAAGCGGCGAGGACAACGCCCCGCCGCAA
AAGTCCCAGCAGTGGTTGATGTCCTTCACGAAAGGTGGGGTTCTTGTACT
TGCTTGCTTCGGGACGGCTTTGCCTGGTGGTGGGCTGTCTCGCTCGCGCA
TCTTCTCTGCTTGCGGCAAAGCGCCGACGGGGAGACTTGTGGGGCCATTT
GCATCCATTGGAACCCATCCGCGCTGCTGCTGCTATGTACTGTTTCAACG
GCATGCGTTTGCAGCATGTCCAGAGCAGGCTCTGCACCCCCGAAGGGGCA
CGCCCGTTCTCTGCGTGTGTGTTGTCTCAGTGCTGTTTCCTCAGCATGGG
TTCCTGATAACGTGTTTTAAGTCCGCTTACAAAAAAAGGCTTAGCTCAGC
CAGTTTGAACTGTGTTTGATTGGGTAAAAAATACTGGAGTAGGGTACATG
CACATGCGTGGCTGTCTCGGCGAAAACTGCTCTCGCTCAACCCGCGAGGC
TGGAACATAGAGACGAGGAAGGCTACGGCCCGGAGCGTTTATTTCTTGCT
TTTCTTCGTCTCGATCCCTCTTCTCTTTCTCTCCTTGCTCCGCCCCCCAA
ATCATCTGTTCTATTTTCTACGTACTTGTAAATGACTTTGGTGTCAACTG
TTATTTTCAGCTGAACACGCTCTCATTGCATATTTATATATATTTTCCCT
CCGACCCCTTCCCCCGCCCCCTCGTACCGACGCTGCTGTGTTCCTTCTTT
TGTTGTTCGTCGCCGCGGCGTGGTCGCTGTGATGTCCCCTTGCATTTGTT
TTCGCCACGTGCAACTGCTGTTGTTGTACCGTCATCCGTGTCTTCCTTGG
ATTCAGCGGACTTCGACGAGCTCAAAGAGCTGTACAACATGGAGGGGTCG
CACATCCCGCACCGCAACGACGGGCCACGGTCGGACTATTACGACCCCCT
CCGTGACGGCAACCGCGAGTCCAACCGCCAATGAAACGAACTTGCGGGTG
TATCGATAATCGGTCGGATTGTGGGAGTGTAGTCTCCGGTCGCCCCGGTG
GTCTAGTGGTTTAACCTCGAACCCACAGCAAAGTCTGTAGCTCAATTCCA
AGCAGGATGTGTTTCTTTTGCGACTTTGCAGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1897:8963..11546+

>mRNA_L-elsbetiae_contig1897.5574.1 ID=mRNA_L-elsbetiae_contig1897.5574.1|Name=mRNA_L-elsbetiae_contig1897.5574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig1897:8963..11546+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCTTCACGAAAGATGTCCTTCACGAAAGCGGACTTCGACGAGCTCA
AAGAGCTGTACAACATGGAGGGGTCGCACATCCCGCACCGCAACGACGGG
CCACGGTCGGACTATTACGACCCCCTCCGTGACGGCAACCGCGAGTCCAA
CCGCCAATGACGGACTTCGACGAGCTCAAAGAGCTGTACAACATGGAGGG
GTCGCACATCCCGCACCGCAACGACGGGCCACGGTCGGACTATTACGACC
CCCTCCGTGACGGCAACCGCGAGTCCAACCGCCAATGA
back to top