mRNA_L-elsbetiae_contig18954.5568.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18954.5568.1
Unique NamemRNA_L-elsbetiae_contig18954.5568.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18954.5568.1 vs. uniprot
Match: D7FK36_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK36_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.470e-15
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   79 EEQSSRRFSRSYRLGKKMGEGEFANTYGATKRGEKRGERSSCIVKRA-RRGSSKDGEHALAEEARILRLLTHRS 297
            E+  S  FSR Y LGKK+GEG FA T+GA +RG+++G + SCIVKRA +RG+S +  H L EEARILRLLTH S
Sbjct:  506 EQPGSSEFSRLYALGKKLGEGAFAETFGAIRRGQRKGSQGSCIVKRAVQRGASHEVMHGLVEEARILRLLTHPS 579
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BLAST of mRNA_L-elsbetiae_contig18954.5568.1 vs. uniprot
Match: D8LK21_ECTSI (Possible Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK21_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.160e-11
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:   67 RHGSEEQSSRRFSRSYRLGKKMGEGEFANTYGATKRGEKRGERSSCIVKRARRGSSKDGEHALAEEARILRLLTH 291
            +H   E  S+RFSRS+ LGKK+GEG FA  + AT +G++ G +S  + +  RRG +K+ E  L EE RILRLL H
Sbjct:   65 KHSFREFHSKRFSRSFNLGKKLGEGAFAEVFEATVKGDRPGGKSYAVKRTVRRGLAKEDEKGLLEEVRILRLLQH 139
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18954.5568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK36_ECTSI1.470e-1560.81Protein kinase domain-containing protein n=2 Tax=E... [more]
D8LK21_ECTSI5.160e-1149.33Possible Ca2+/calmodulin-dependent protein kinase,... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18954contigL-elsbetiae_contig18954:1708..2418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue3.7e-13
Seed eggNOG ortholog2880.D7FK36
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calmodulin-dependent protein kinase activity
EggNOG OGsKOG0033@1,KOG0033@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size299
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.6539526-CDS-L-elsbetiae_contig18954:1707..17401622815787.6539526-CDS-L-elsbetiae_contig18954:1707..1740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18954 1708..1740 -
1691683102.6878676-CDS-L-elsbetiae_contig18954:1707..17401691683102.6878676-CDS-L-elsbetiae_contig18954:1707..1740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18954 1708..1740 -
1622815787.6718054-CDS-L-elsbetiae_contig18954:2154..24181622815787.6718054-CDS-L-elsbetiae_contig18954:2154..2418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18954 2155..2418 -
1691683102.7008827-CDS-L-elsbetiae_contig18954:2154..24181691683102.7008827-CDS-L-elsbetiae_contig18954:2154..2418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18954 2155..2418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18954.5568.1prot_L-elsbetiae_contig18954.5568.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18954 1708..2418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18954.5568.1

>prot_L-elsbetiae_contig18954.5568.1 ID=prot_L-elsbetiae_contig18954.5568.1|Name=mRNA_L-elsbetiae_contig18954.5568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
KGVGQQRKGEEPSSQKVRDDERRHGSEEQSSRRFSRSYRLGKKMGEGEFA
NTYGATKRGEKRGERSSCIVKRARRGSSKDGEHALAEEARILRLLTHRS
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mRNA from alignment at L-elsbetiae_contig18954:1708..2418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18954.5568.1 ID=mRNA_L-elsbetiae_contig18954.5568.1|Name=mRNA_L-elsbetiae_contig18954.5568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=711bp|location=Sequence derived from alignment at L-elsbetiae_contig18954:1708..2418- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGTGTCGGTCAGCAACGGAAGGGGGAGGAGCCGTCCTCGCAAAAGGT
GAGAGACGACGAGCGACGCCACGGAAGCGAGGAGCAATCATCCCGGAGGT
TCTCCCGGTCGTACAGACTGGGCAAGAAGATGGGGGAGGGAGAATTCGCT
AACACGTACGGAGCTACCAAGCGCGGGGAAAAGCGCGGGGAAAGGTCGTC
GTGCATCGTCAAGCGGGCTCGACGGGGATCGTCGAAGGACGGTGAACACG
CCTTGGCTGAGGAGGTGAGGCAACTCGGCTGTTTATTCAAGCGAGAACCT
CTTATGTATGATCTCAGGATGTGGTGGTGAAACCGCCGCGTGTAGCACTA
AGCAGCTGACGACTACAGCCCGCGCTGCAAGAGCTTTCTCTTCCACGAGT
GCTACCCAGCCTTGCTACAGCAGTAGCGTCAGATTTCTAAACTTTGTGTA
TGTACGTTGTGTGTCATTTTTGTTCGGTGCAAGCGGGCGTCATCGCAACG
TGTCTGTTCAGCTCGTGCACATGTACGCCCACGTGCCCTCCTCGCTGATT
ATTTGCCCCAAAGACCATTTTGATCAAAAGTGCACTCTAACGAAAATTGC
TACGCTAATGATTTTGTATTTTTTCGTGCACACGCTTCTCGCGGGTGGAT
TTTTTTTTTTTTGCGCCCGCCGAGCAAGGCCCGGATACTGCGACTGCTGA
CACACCGAAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18954:1708..2418-

>mRNA_L-elsbetiae_contig18954.5568.1 ID=mRNA_L-elsbetiae_contig18954.5568.1|Name=mRNA_L-elsbetiae_contig18954.5568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig18954:1708..2418- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGTGTCGGTCAGCAACGGAAGGGGGAGGAGCCGTCCTCGCAAAAGGT
GAGAGACGACGAGCGACGCCACGGAAGCGAGGAGCAATCATCCCGGAGGT
TCTCCCGGTCGTACAGACTGGGCAAGAAGATGGGGGAGGGAGAATTCGCT
AACACGTACGGAGCTACCAAGCGCGGGGAAAAGCGCGGGGAAAGGTCGTC
GTGCATCGTCAAGCGGGCTCGACGGGGATCGTCGAAGGACGGTGAACACG
CCTTGGCTGAGGAGAAGGGTGTCGGTCAGCAACGGAAGGGGGAGGAGCCG
TCCTCGCAAAAGGTGAGAGACGACGAGCGACGCCACGGAAGCGAGGAGCA
ATCATCCCGGAGGTTCTCCCGGTCGTACAGACTGGGCAAGAAGATGGGGG
AGGGAGAATTCGCTAACACGTACGGAGCTACCAAGCGCGGGGAAAAGCGC
GGGGAAAGGTCGTCGTGCATCGTCAAGCGGGCTCGACGGGGATCGTCGAA
GGACGGTGAACACGCCTTGGCTGAGGAGGCCCGGATACTGCGACTGCTGA
CACACCGAAGCGCCCGGATACTGCGACTGCTGACACACCGAAGC
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