mRNA_L-elsbetiae_contig1895.5567.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1895.5567.1
Unique NamemRNA_L-elsbetiae_contig1895.5567.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1895.5567.1 vs. uniprot
Match: A0A6H5JH57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH57_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.880e-7
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  310 HLRNFAVSADERRQMEEDYRLALTMQRGGVAGAAGDRG 423
            HLRNFAV+ADERRQMEEDYRLAL MQ+G  A A G  G
Sbjct:   28 HLRNFAVTADERRQMEEDYRLALAMQKGEAAAANGTGG 65
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BLAST of mRNA_L-elsbetiae_contig1895.5567.1 vs. uniprot
Match: D8LDG4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.410e-6
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  310 HLRNFAVSADERRQMEEDYRLALTMQRGGVAGAAG 414
            HLRNFAV+ADERRQMEEDYRLAL MQ+G  A A G
Sbjct:  378 HLRNFAVTADERRQMEEDYRLALAMQKGEAAVANG 412
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1895.5567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH57_9PHAE1.880e-776.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDG4_ECTSI1.410e-680.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1895contigL-elsbetiae_contig1895:21326..21757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size432
Cds size180
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.608545-UTR-L-elsbetiae_contig1895:21325..215771622815787.608545-UTR-L-elsbetiae_contig1895:21325..21577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1895 21326..21577 +
1691683102.6667001-UTR-L-elsbetiae_contig1895:21325..215771691683102.6667001-UTR-L-elsbetiae_contig1895:21325..21577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1895 21326..21577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.6180382-CDS-L-elsbetiae_contig1895:21577..217571622815787.6180382-CDS-L-elsbetiae_contig1895:21577..21757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 21578..21757 +
1691683102.6778505-CDS-L-elsbetiae_contig1895:21577..217571691683102.6778505-CDS-L-elsbetiae_contig1895:21577..21757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 21578..21757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1895.5567.1prot_L-elsbetiae_contig1895.5567.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1895 21578..21757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1895.5567.1

>prot_L-elsbetiae_contig1895.5567.1 ID=prot_L-elsbetiae_contig1895.5567.1|Name=mRNA_L-elsbetiae_contig1895.5567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MEMRGQEFTSPSSSWRRKYHLRNFAVSADERRQMEEDYRLALTMQRGGVA
GAAGDRGEM*
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mRNA from alignment at L-elsbetiae_contig1895:21326..21757+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1895.5567.1 ID=mRNA_L-elsbetiae_contig1895.5567.1|Name=mRNA_L-elsbetiae_contig1895.5567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig1895:21326..21757+ (Laminarionema elsbetiae ELsaHSoW15)
GTAATTTCACAGCCGGCCGCTGGTAGAACGACATGTTTCCTCTCCCGCTC
GCGGCGCTACAGTAATATATGCCGTGTCGCGTCACTAAATACTCCTATTT
AGGATGCTTTGTAGGCTCAGAATGGCAGCGGGGACGGCACGCCGCAGAAA
CAGTAATTATGTTTATTGATGACGAGTTGCGAATGTGAAGGTTTGTCGGG
TCGTGCAACCAGCTTTTGTTTTCGTGGCCCCCAGTAAGCACCGGGGTGGG
TGATGGAGATGCGGGGGCAGGAGTTCACTTCGCCTTCTTCCAGCTGGAGG
CGAAAATACCACCTGAGAAACTTTGCCGTGTCGGCCGACGAGCGGAGGCA
GATGGAGGAGGACTACCGCCTGGCGCTCACGATGCAGAGGGGTGGGGTAG
CTGGTGCGGCTGGTGACCGAGGTGAGATGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1895:21326..21757+

>mRNA_L-elsbetiae_contig1895.5567.1 ID=mRNA_L-elsbetiae_contig1895.5567.1|Name=mRNA_L-elsbetiae_contig1895.5567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig1895:21326..21757+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGCGGGGGCAGGAGTTCACTTCGCCTTCTTCCAGCTGGAGGCG
AAAATACCACCTGAGAAACTTTGCCGTGTCGGCCGACGAGCGGAGGCAGA
TGGAGGAGGACTACCGCCTGGCGCTCACGATGCAGAGGGGTGGGGTAGCT
GGTGCGGCTGGTGACCGAGGTGAGATGTAAATGGAGATGCGGGGGCAGGA
GTTCACTTCGCCTTCTTCCAGCTGGAGGCGAAAATACCACCTGAGAAACT
TTGCCGTGTCGGCCGACGAGCGGAGGCAGATGGAGGAGGACTACCGCCTG
GCGCTCACGATGCAGAGGGGTGGGGTAGCTGGTGCGGCTGGTGACCGAGG
TGAGATGTAA
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