mRNA_L-elsbetiae_contig1895.5566.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1895.5566.1
Unique NamemRNA_L-elsbetiae_contig1895.5566.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1895.5566.1 vs. uniprot
Match: D7FTH3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 7.580e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 MLDVMSKRCTHHGCTKHPSYGTVGGKA-ECCRDHTKDGMVN 120
            M+D++SKRC H GC KHPS+G  G K  E C  H+++GMVN
Sbjct:    1 MIDLVSKRCGHPGCMKHPSHGKDGSKRPEICAQHSQEGMVN 41
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BLAST of mRNA_L-elsbetiae_contig1895.5566.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.240e-5
Identity = 25/40 (62.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 MLDVMSKRCTHHGCTKHPSYGTVGGK-AECCRDHTKDGMV 117
            M+DV+SKRC H GCTK PSYG  G K AE C  H   GMV
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1895.5566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTH3_ECTSI7.580e-656.10EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FUJ6_ECTSI1.240e-562.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1895contigL-elsbetiae_contig1895:19422..21011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size878
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1895.5566.1prot_L-elsbetiae_contig1895.5566.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1895 19422..20967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.545061-CDS-L-elsbetiae_contig1895:19421..196351622815787.545061-CDS-L-elsbetiae_contig1895:19421..19635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 19422..19635 +
1691683102.6153984-CDS-L-elsbetiae_contig1895:19421..196351691683102.6153984-CDS-L-elsbetiae_contig1895:19421..19635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 19422..19635 +
1622815787.5574296-CDS-L-elsbetiae_contig1895:19680..202231622815787.5574296-CDS-L-elsbetiae_contig1895:19680..20223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 19681..20223 +
1691683102.6344144-CDS-L-elsbetiae_contig1895:19680..202231691683102.6344144-CDS-L-elsbetiae_contig1895:19680..20223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 19681..20223 +
1622815787.5704648-CDS-L-elsbetiae_contig1895:20890..209671622815787.5704648-CDS-L-elsbetiae_contig1895:20890..20967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 20891..20967 +
1691683102.6466172-CDS-L-elsbetiae_contig1895:20890..209671691683102.6466172-CDS-L-elsbetiae_contig1895:20890..20967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 20891..20967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.5799758-UTR-L-elsbetiae_contig1895:20967..210111622815787.5799758-UTR-L-elsbetiae_contig1895:20967..21011Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1895 20968..21011 +
1691683102.6565187-UTR-L-elsbetiae_contig1895:20967..210111691683102.6565187-UTR-L-elsbetiae_contig1895:20967..21011Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1895 20968..21011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1895.5566.1

>prot_L-elsbetiae_contig1895.5566.1 ID=prot_L-elsbetiae_contig1895.5566.1|Name=mRNA_L-elsbetiae_contig1895.5566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=278bp
MLDVMSKRCTHHGCTKHPSYGTVGGKAECCRDHTKDGMVNVVSKRCTHHG
CTKIPSYGKAGGKAEYCRDHASCTKRPSYGTAGGKVEYCRDHAEDGMADV
KNKRCASPGCTKQPSYGEENTGTRKFCARHAEEGTILLSGRSRGDSKKSG
RDDAGARDSGTASRAGSGETRSSPASAPTPVEPSSRGSRESNERARRGAC
AGHLRPVRVKREGADNRVLGDENSAACPESDTAALKTEDMEVPSKVEPAE
AAGRAIVARTRRRKTAGGAGARLLTSR*
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mRNA from alignment at L-elsbetiae_contig1895:19422..21011+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1895.5566.1 ID=mRNA_L-elsbetiae_contig1895.5566.1|Name=mRNA_L-elsbetiae_contig1895.5566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1590bp|location=Sequence derived from alignment at L-elsbetiae_contig1895:19422..21011+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGATGTGATGAGCAAGAGATGCACCCACCACGGTTGCACCAAGCA
CCCGTCATACGGCACGGTTGGTGGCAAGGCAGAGTGCTGCCGTGACCATA
CCAAGGACGGGATGGTGAACGTCGTCAGCAAGAGATGCACCCACCACGGT
TGCACCAAGATCCCATCCTACGGCAAGGCTGGCGGCAAAGCGGAGTACTG
CCGGGACCATGCCAAGGACGGGATGGCGGACGTGAAGCACAAAAGATGCA
CCCACCACGGTTGCACCAAGCGGCCGTCATACGGTACAGCTGGTGGAAAG
GTAGAGTACTGCCGTGACCATGCCGAGGACGGGATGGCGGACGTGAAGAA
CAAGAGATGTGCCTCTCCTGGGTGCACCAAGCAGCCGTCATACGGGGAGG
AGAACACTGGCACCCGGAAGTTCTGTGCACGACACGCCGAAGAAGGCACG
ATTCTTCTATCTGGCCGGTCCAGGGGAGACAGCAAAAAAAGTGGACGTGA
TGATGCCGGTGCAAGGGATAGTGGCACCGCTAGCCGTGCTGGCTCCGGTG
AAACGCGGAGCAGCCCCGCTTCTGCACCCACCCCAGTGGAGCCTTCCTCG
AGAGGGAGCAGGGAGAGCAACGAACGAGCCCGCCGGGGTGCCTGTGCAGG
CCACTTACGTCCGGTTCGGGTTAAAAGAGAAGGGGCTGACAACAGGGTGC
TCGGCGACGAGAATTCTGCGGCATGTCCGGAGTCAGATACTGCTGCGTTG
AAGACAGAGGACATGGAAGTGCCTTCCAAGGTGGAGCCGGCGGAAGCTGC
AGGTGCGTTGAAACCAAGTCCCAGGTAGTTGACGTCGCGGAGTGTTGCGT
TACGTACGTTCGGATCGATGTAGGAGACAGACGATGATTGGAGGCAGACA
TAGGCATATGTCAGCACAACACACGCAACAACTGAGCAGGGTATGCAGAC
ACCGCCGCTGCATCGCTGAAAGGTGAACACATATGCACAAGAAACAGTAT
CAGCGTTTGACAAGCTTGGTAGCTTTACTTTACTCGATATGCAGCAGTCC
TTTGGGGGCGCCGAACACCCCTGCGTTGCAATATCGTACCTACGGTACAA
CGAAAGCGCGTTATCCCCGCTTCGTGTTTTGTGTTCGGCCGCTTCATGTT
TCGGGTTTTGGTCGCTTTTTCCTCGTGTCAAATTATCTGACGTGATTTGA
TGTACTCTCTGTTCGCCCACCGTTGGGGCATCTTTCGCTTTTTCACCTCA
TCTGGTACGGAAAGAATGTTGCTTGATCGCGCACTTTGTATGTAGTTTGT
ACAGCACAGGTAGATGTGGGGGGTCACGTTTCGTCAAACCACCCTTCCAC
ACCACCAGCATCAGCCTACCCCCGGTCTTGGTTGTAGTCCGTCTATTCCG
GTCTCCTATGTTTACCTATCATCCGGATGTGGCTCTTGTGTGCCTGACCT
CTGCTCTTTATCAATGCAGGCCGGGCAATCGTCGCCAGGACGAGGCGCAG
AAAGACTGCGGGGGGGGCAGGCGCGAGATTGCTGACATCGCGCTAACAGC
AGCAGTACCGTGGTGTCTGTGGCAAATCGTGGCGGGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1895:19422..21011+

>mRNA_L-elsbetiae_contig1895.5566.1 ID=mRNA_L-elsbetiae_contig1895.5566.1|Name=mRNA_L-elsbetiae_contig1895.5566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1668bp|location=Sequence derived from alignment at L-elsbetiae_contig1895:19422..21011+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGATGTGATGAGCAAGAGATGCACCCACCACGGTTGCACCAAGCA
CCCGTCATACGGCACGGTTGGTGGCAAGGCAGAGTGCTGCCGTGACCATA
CCAAGGACGGGATGGTGAACGTCGTCAGCAAGAGATGCACCCACCACGGT
TGCACCAAGATCCCATCCTACGGCAAGGCTGGCGGCAAAGCGGAGTACTG
CCGGGACCATGCCAATGCTGGATGTGATGAGCAAGAGATGCACCCACCAC
GGTTGCACCAAGCACCCGTCATACGGCACGGTTGGTGGCAAGGCAGAGTG
CTGCCGTGACCATACCAAGGACGGGATGGTGAACGTCGTCAGCAAGAGAT
GCACCCACCACGGTTGCACCAAGATCCCATCCTACGGCAAGGCTGGCGGC
AAAGCGGAGTACTGCCGGGACCATGCCAGTTGCACCAAGCGGCCGTCATA
CGGTACAGCTGGTGGAAAGGTAGAGTACTGCCGTGACCATGCCGAGGACG
GGATGGCGGACGTGAAGAACAAGAGATGTGCCTCTCCTGGGTGCACCAAG
CAGCCGTCATACGGGGAGGAGAACACTGGCACCCGGAAGTTCTGTGCACG
ACACGCCGAAGAAGGCACGATTCTTCTATCTGGCCGGTCCAGGGGAGACA
GCAAAAAAAGTGGACGTGATGATGCCGGTGCAAGGGATAGTGGCACCGCT
AGCCGTGCTGGCTCCGGTGAAACGCGGAGCAGCCCCGCTTCTGCACCCAC
CCCAGTGGAGCCTTCCTCGAGAGGGAGCAGGGAGAGCAACGAACGAGCCC
GCCGGGGTGCCTGTGCAGGCCACTTACGTCCGGTTCGGGTTAAAAGAGAA
GGGGCTGACAACAGGGTGCTCGGCGACGAGAATTCTGCGGCATGTCCGGA
GTCAGATACTGCTGCGTTGAAGACAGAGGACATGGAAGTGCCTTCCAAGG
TGGAGCCGGCGGAAGCTGCAGGTTGCACCAAGCGGCCGTCATACGGTACA
GCTGGTGGAAAGGTAGAGTACTGCCGTGACCATGCCGAGGACGGGATGGC
GGACGTGAAGAACAAGAGATGTGCCTCTCCTGGGTGCACCAAGCAGCCGT
CATACGGGGAGGAGAACACTGGCACCCGGAAGTTCTGTGCACGACACGCC
GAAGAAGGCACGATTCTTCTATCTGGCCGGTCCAGGGGAGACAGCAAAAA
AAGTGGACGTGATGATGCCGGTGCAAGGGATAGTGGCACCGCTAGCCGTG
CTGGCTCCGGTGAAACGCGGAGCAGCCCCGCTTCTGCACCCACCCCAGTG
GAGCCTTCCTCGAGAGGGAGCAGGGAGAGCAACGAACGAGCCCGCCGGGG
TGCCTGTGCAGGCCACTTACGTCCGGTTCGGGTTAAAAGAGAAGGGGCTG
ACAACAGGGTGCTCGGCGACGAGAATTCTGCGGCATGTCCGGAGTCAGAT
ACTGCTGCGTTGAAGACAGAGGACATGGAAGTGCCTTCCAAGGTGGAGCC
GGCGGAAGCTGCAGGCCGGGCAATCGTCGCCAGGACGAGGCGCAGAAAGA
CTGCGGGGGGGGCAGGCGCGAGATTGCTGACATCGCGCTAAGCCGGGCAA
TCGTCGCCAGGACGAGGCGCAGAAAGACTGCGGGGGGGGCAGGCGCGAGA
TTGCTGACATCGCGCTAA
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