mRNA_L-elsbetiae_contig18938.5563.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18938.5563.1
Unique NamemRNA_L-elsbetiae_contig18938.5563.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: A0A6H5K6L7_9PHAE (Calmodulin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.500e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK
Sbjct:    4 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 70
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: A0A7S2GSR7_9STRA (Calmodulin n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GSR7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.030e-37
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            +EEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK
Sbjct:   34 EEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 100
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: A0A7S3PSQ8_9STRA (Calmodulin n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3PSQ8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 5.980e-35
Identity = 61/67 (91.04%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            +EEI+EAFKVFDKDGNGFISAAELRH+MTNLGEKLTD+E DEMIREADIDGDGQINYEEFVKMM+SK
Sbjct:   83 EEEIIEAFKVFDKDGNGFISAAELRHVMTNLGEKLTDDECDEMIREADIDGDGQINYEEFVKMMLSK 149
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: A0A7S2JIF7_9DINO (Calmodulin n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIF7_9DINO)

HSP 1 Score: 125 bits (313), Expect = 7.220e-35
Identity = 60/67 (89.55%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            +EE++EAFKVFD+DGNGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVKMMM+K
Sbjct:  114 EEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 180
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: A0A4V1IYQ4_9FUNG (Calmodulin n=2 Tax=Zoopagomycota TaxID=1913638 RepID=A0A4V1IYQ4_9FUNG)

HSP 1 Score: 123 bits (308), Expect = 1.710e-34
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            +EEI EAFKVFDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINY+EFVKMMMSK
Sbjct:   83 EEEIREAFKVFDKDSNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKMMMSK 149
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: F0W7H9_9STRA (Calmodulin n=5 Tax=Albugo TaxID=65356 RepID=F0W7H9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.880e-34
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            +EEILEAFKVFDKD NGFISAAELRHIMTNLGEKLTDEEVDEMIREAD+DGDGQI YEEFVKMMMSK
Sbjct:   83 EEEILEAFKVFDKDLNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQICYEEFVKMMMSK 149
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: A0A5A8D0N1_CAFRO (Calmodulin n=4 Tax=Eukaryota TaxID=2759 RepID=A0A5A8D0N1_CAFRO)

HSP 1 Score: 121 bits (304), Expect = 6.930e-34
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    4 EEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            EEI EAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREAD+DGDGQINY+EFV MMM+K
Sbjct:   84 EEIKEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVDMMMAK 149
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: A0A1J3CWK1_NOCCA (Calmodulin n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CWK1_NOCCA)

HSP 1 Score: 119 bits (297), Expect = 9.800e-34
Identity = 57/67 (85.07%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            +EE++EAFKVFD+DGNG ISAAELRH+MTNLGEKLTDEEVDEMIREADIDGDG INYEEFV+MMM++
Sbjct:   11 EEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAR 77
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BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: UPI001F22009C (EF-hand domain-containing protein n=1 Tax=Pseudomonas putida TaxID=303 RepID=UPI001F22009C)

HSP 1 Score: 119 bits (297), Expect = 1.270e-33
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            +EE+ EAF+VFDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:   20 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 86
[Close]
BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Match: A0A8J1ULM4_OWEFU (Ofus.G151864 protein (Fragment) n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1ULM4_OWEFU)

HSP 1 Score: 120 bits (301), Expect = 1.320e-33
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 201
            +EEI EAF+VFDKDGNGFISAAELRH+MTN GEKLTDEEVDEMI++ADIDGDGQ+NYEEFVKMMMSK
Sbjct:   68 EEEIKEAFRVFDKDGNGFISAAELRHVMTNHGEKLTDEEVDEMIKDADIDGDGQVNYEEFVKMMMSK 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18938.5563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6L7_9PHAE1.500e-38100.00Calmodulin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A7S2GSR7_9STRA1.030e-3798.51Calmodulin n=1 Tax=Dictyocha speculum TaxID=35687 ... [more]
A0A7S3PSQ8_9STRA5.980e-3591.04Calmodulin n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7... [more]
A0A7S2JIF7_9DINO7.220e-3589.55Calmodulin n=1 Tax=Brandtodinium nutricula TaxID=1... [more]
A0A4V1IYQ4_9FUNG1.710e-3491.04Calmodulin n=2 Tax=Zoopagomycota TaxID=1913638 Rep... [more]
F0W7H9_9STRA4.880e-3494.03Calmodulin n=5 Tax=Albugo TaxID=65356 RepID=F0W7H9... [more]
A0A5A8D0N1_CAFRO6.930e-3492.42Calmodulin n=4 Tax=Eukaryota TaxID=2759 RepID=A0A5... [more]
A0A1J3CWK1_NOCCA9.800e-3485.07Calmodulin n=1 Tax=Noccaea caerulescens TaxID=1072... [more]
UPI001F22009C1.270e-3386.57EF-hand domain-containing protein n=1 Tax=Pseudomo... [more]
A0A8J1ULM4_OWEFU1.320e-3388.06Ofus.G151864 protein (Fragment) n=1 Tax=Owenia fus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18938contigL-elsbetiae_contig18938:2277..2480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue5.9e-26
Seed eggNOG ortholog653948.CCA17080
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.2496421-CDS-L-elsbetiae_contig18938:2276..24801622815787.2496421-CDS-L-elsbetiae_contig18938:2276..2480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18938 2277..2480 +
1691683102.3909047-CDS-L-elsbetiae_contig18938:2276..24801691683102.3909047-CDS-L-elsbetiae_contig18938:2276..2480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18938 2277..2480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18938.5563.1prot_L-elsbetiae_contig18938.5563.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18938 2277..2480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18938.5563.1

>prot_L-elsbetiae_contig18938.5563.1 ID=prot_L-elsbetiae_contig18938.5563.1|Name=mRNA_L-elsbetiae_contig18938.5563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
QEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADID
GDGQINYEEFVKMMMSK*
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mRNA from alignment at L-elsbetiae_contig18938:2277..2480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18938.5563.1 ID=mRNA_L-elsbetiae_contig18938.5563.1|Name=mRNA_L-elsbetiae_contig18938.5563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=204bp|location=Sequence derived from alignment at L-elsbetiae_contig18938:2277..2480+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGAAATCCTCGAGGCGTTCAAGGTGTTCGACAAGGACGGTAACGG
TTTCATCTCGGCGGCGGAGCTCCGCCACATCATGACGAACCTAGGGGAGA
AGCTCACCGACGAGGAGGTGGACGAGATGATCCGCGAGGCGGATATCGAC
GGGGACGGGCAGATCAACTACGAAGAGTTCGTGAAGATGATGATGTCGAA
GTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18938:2277..2480+

>mRNA_L-elsbetiae_contig18938.5563.1 ID=mRNA_L-elsbetiae_contig18938.5563.1|Name=mRNA_L-elsbetiae_contig18938.5563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig18938:2277..2480+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGAAATCCTCGAGGCGTTCAAGGTGTTCGACAAGGACGGTAACGG
TTTCATCTCGGCGGCGGAGCTCCGCCACATCATGACGAACCTAGGGGAGA
AGCTCACCGACGAGGAGGTGGACGAGATGATCCGCGAGGCGGATATCGAC
GGGGACGGGCAGATCAACTACGAAGAGTTCGTGAAGATGATGATGTCGAA
GTAGCAGGAGGAAATCCTCGAGGCGTTCAAGGTGTTCGACAAGGACGGTA
ACGGTTTCATCTCGGCGGCGGAGCTCCGCCACATCATGACGAACCTAGGG
GAGAAGCTCACCGACGAGGAGGTGGACGAGATGATCCGCGAGGCGGATAT
CGACGGGGACGGGCAGATCAACTACGAAGAGTTCGTGAAGATGATGATGT
CGAAGTAG
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