mRNA_L-elsbetiae_contig18933.5562.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18933.5562.1
Unique NamemRNA_L-elsbetiae_contig18933.5562.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18933.5562.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.030e-13
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:  187 ELGLNWLEDPGRDVPFEFADLHEAMTLPCSIQLFPRVERRSI 312
            EL   WLEDPG DVPFEFADLH+A +LPC+IQLFPRV+RRSI
Sbjct:  222 ELESTWLEDPGEDVPFEFADLHQATSLPCNIQLFPRVDRRSI 263
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18933.5562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE1.030e-1378.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18933contigL-elsbetiae_contig18933:1843..2545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.2045379-CDS-L-elsbetiae_contig18933:1842..20971622815787.2045379-CDS-L-elsbetiae_contig18933:1842..2097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18933 1843..2097 +
1691683102.3646913-CDS-L-elsbetiae_contig18933:1842..20971691683102.3646913-CDS-L-elsbetiae_contig18933:1842..2097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18933 1843..2097 +
1622815787.2173557-CDS-L-elsbetiae_contig18933:2488..25451622815787.2173557-CDS-L-elsbetiae_contig18933:2488..2545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18933 2489..2545 +
1691683102.3777244-CDS-L-elsbetiae_contig18933:2488..25451691683102.3777244-CDS-L-elsbetiae_contig18933:2488..2545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18933 2489..2545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18933.5562.1prot_L-elsbetiae_contig18933.5562.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18933 1843..2545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18933.5562.1

>prot_L-elsbetiae_contig18933.5562.1 ID=prot_L-elsbetiae_contig18933.5562.1|Name=mRNA_L-elsbetiae_contig18933.5562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
QAKEPLRQQQLSVAVSGPMHSTRLATAEGQVDSVDGLAHQQRQQWNRQDE
GVSLAAARRRRKELGLNWLEDPGRDVPFEFADLHEAMTLPCSIQLFPRVE
RRSI
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mRNA from alignment at L-elsbetiae_contig18933:1843..2545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18933.5562.1 ID=mRNA_L-elsbetiae_contig18933.5562.1|Name=mRNA_L-elsbetiae_contig18933.5562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=703bp|location=Sequence derived from alignment at L-elsbetiae_contig18933:1843..2545+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGAAGGAACCTCTGCGACAGCAGCAGCTTTCTGTTGCTGTCTCGGG
TCCGATGCATAGCACGAGACTGGCCACCGCTGAAGGCCAAGTAGACTCGG
TCGACGGGCTGGCACATCAACAGCGGCAGCAGTGGAACAGGCAAGACGAG
GGTGTGTCGTTGGCTGCAGCCCGCCGACGGCGCAAGGAGCTGGGGCTGAA
TTGGCTTGAGGACCCGGGTCGGGACGTGCCCTTCGAGTTCGCCGATTTGC
ACGAGGTAGGTATGTACATGAATGCACAACAGCAGCAGTATGTATCATAC
GCACATACATGAGAGATTGCGGCAGCAGCAAGAGGTTCAACTATGTAATG
AAGTTTACATATGCATGTATACACATACGTCCAGGATATGTTAAGTATCC
GAAACGCATAAAGACACGACAGGGGGGATTGCTGTGTCGGATGTTCAGTG
GCCTCTCTCTCCCGCTGCAGTACAGCAGTAATTGTGGCTGAATTGCCCTC
CACAAAACGGCAGTTGGTGCTGGGCCGGTATCGTTGTCGGTGGTGCACGA
TGCCTTTACTTTGCTGTGCTGGTGTGGTACACATGTATGTAGCATGTTGT
GGTAACCCGGCCCTCGCACACACACACCGAATATTTCCCACGGCAGGCGA
TGACCCTCCCTTGCAGCATCCAGCTCTTCCCGCGCGTGGAACGGAGATCT
ATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18933:1843..2545+

>mRNA_L-elsbetiae_contig18933.5562.1 ID=mRNA_L-elsbetiae_contig18933.5562.1|Name=mRNA_L-elsbetiae_contig18933.5562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig18933:1843..2545+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGAAGGAACCTCTGCGACAGCAGCAGCTTTCTGTTGCTGTCTCGGG
TCCGATGCATAGCACGAGACTGGCCACCGCTGAAGGCCAAGTAGACTCGG
TCGACGGGCTGGCACATCAACAGCGGCAGCAGTGGAACAGGCAAGACGAG
GGTGTGTCGTTGGCTGCAGCCCGCCGACGGCGCAAGGAGCTGGGGCTGAA
TTGGCTTGAGGACCCGGGTCGGGACGTGCCCTTCGAGTTCGCCGATTTGC
ACGAGCAGGCGAAGGAACCTCTGCGACAGCAGCAGCTTTCTGTTGCTGTC
TCGGGTCCGATGCATAGCACGAGACTGGCCACCGCTGAAGGCCAAGTAGA
CTCGGTCGACGGGCTGGCACATCAACAGCGGCAGCAGTGGAACAGGCAAG
ACGAGGGTGTGTCGTTGGCTGCAGCCCGCCGACGGCGCAAGGAGCTGGGG
CTGAATTGGCTTGAGGACCCGGGTCGGGACGTGCCCTTCGAGTTCGCCGA
TTTGCACGAGGCGATGACCCTCCCTTGCAGCATCCAGCTCTTCCCGCGCG
TGGAACGGAGATCTATCGCGATGACCCTCCCTTGCAGCATCCAGCTCTTC
CCGCGCGTGGAACGGAGATCTATC
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