mRNA_L-elsbetiae_contig1891.5555.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1891.5555.1
Unique NamemRNA_L-elsbetiae_contig1891.5555.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1891.5555.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.140e-10
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 2 
Query:   62 MRKACDRCTMRKIKCDGTPIICKRCETDGQYCRYSPRAKSGPKPQTVRRTKSTPSSSR 235
            +R +CDRCTMRKIKCDG    C+RC+ D Q+C YS ++KSGPKP ++RR KS+P+  R
Sbjct:  421 LRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRR-KSSPTPPR 477
[Close]
BLAST of mRNA_L-elsbetiae_contig1891.5555.1 vs. uniprot
Match: A0A6H5L603_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L603_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.640e-10
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 2 
Query:   71 ACDRCTMRKIKCDGTPIICKRCETDGQYCRYSPRAKSGPKPQTVRRTKSTPSSSR 235
            +CDRCTMRKIKCDG    C+RC+ D Q+C YS ++KSGPKP ++RR KS+P S R
Sbjct:  474 SCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRR-KSSPRSPR 527
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1891.5555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLU9_ECTSI2.140e-1058.62C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
A0A6H5L603_9PHAE5.640e-1061.82Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1891contigL-elsbetiae_contig1891:13211..15332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1034
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1891.5555.1prot_L-elsbetiae_contig1891.5555.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1891 13404..15271 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.473116-UTR-L-elsbetiae_contig1891:13210..134031622815786.473116-UTR-L-elsbetiae_contig1891:13210..13403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1891 13211..13403 -
1691683101.8539727-UTR-L-elsbetiae_contig1891:13210..134031691683101.8539727-UTR-L-elsbetiae_contig1891:13210..13403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1891 13211..13403 -
1622815786.5215342-UTR-L-elsbetiae_contig1891:15271..153321622815786.5215342-UTR-L-elsbetiae_contig1891:15271..15332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1891 15272..15332 -
1691683101.8981729-UTR-L-elsbetiae_contig1891:15271..153321691683101.8981729-UTR-L-elsbetiae_contig1891:15271..15332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1891 15272..15332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.485175-CDS-L-elsbetiae_contig1891:13403..138561622815786.485175-CDS-L-elsbetiae_contig1891:13403..13856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 13404..13856 -
1691683101.8644738-CDS-L-elsbetiae_contig1891:13403..138561691683101.8644738-CDS-L-elsbetiae_contig1891:13403..13856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 13404..13856 -
1622815786.4978466-CDS-L-elsbetiae_contig1891:14372..146281622815786.4978466-CDS-L-elsbetiae_contig1891:14372..14628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 14373..14628 -
1691683101.8758512-CDS-L-elsbetiae_contig1891:14372..146281691683101.8758512-CDS-L-elsbetiae_contig1891:14372..14628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 14373..14628 -
1622815786.509826-CDS-L-elsbetiae_contig1891:15200..152711622815786.509826-CDS-L-elsbetiae_contig1891:15200..15271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 15201..15271 -
1691683101.886904-CDS-L-elsbetiae_contig1891:15200..152711691683101.886904-CDS-L-elsbetiae_contig1891:15200..15271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 15201..15271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1891.5555.1

>prot_L-elsbetiae_contig1891.5555.1 ID=prot_L-elsbetiae_contig1891.5555.1|Name=mRNA_L-elsbetiae_contig1891.5555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=260bp
MRKACDRCTMRKIKCDGTPIICKRCETDGQYCRYSPRAKSGPKPQTVRRT
KSTPSSSRMVTPASAPATPYAYVTPYVSETGYASAAVADAAAAAAATAAV
VGAKRAASPGQDQDRRGTGGESTLSTAPGARASSPLTASPVSLLPQPAKA
MTPTTAVALAALAGAAAAGGSVQAALGPAEGATITAFGDLGRERVVPATG
VVGTAAAAAAMSAVAAADCGGVLGVDEPGAASAASNAGGGAATTATPEAL
PWVAGGRGQ*
back to top

mRNA from alignment at L-elsbetiae_contig1891:13211..15332-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1891.5555.1 ID=mRNA_L-elsbetiae_contig1891.5555.1|Name=mRNA_L-elsbetiae_contig1891.5555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2122bp|location=Sequence derived from alignment at L-elsbetiae_contig1891:13211..15332- (Laminarionema elsbetiae ELsaHSoW15)
CGTGGGCTCGGGGACGGATCCCGCGGGGACCCCGTCGACTTTCCGGTCGC
CCAGTCTCGAGATGCGGAAAGCGTGTGACCGGTGTACGATGCGAAAAATT
AAGTGCGACGGGACGCCGATCATCTGCAAGCGGTTAGTGAGCCTTCGGGT
GCAGGCAGAGGCAGAAGCAGTTTCATACCGTGACCACGCGATCCCGACTT
GGGAGCACAGCGAGTACCATGGTGCATATGTAGCCACCCGAACCTCCGAA
GGCGGATGGATTCGTGACTCCCTCTCCGCCTTGTTCGTTCTTGAGGACAT
TGTTTTCTTTGGCGTTTCAGTTCGCTGTCTGTCCGCTGGACAATCCGGGA
GATCGATTTTGCTCTCGTCTGTGGTGGATTGTTTGTTGCCTCCACCGGCG
GGGGCGGCTTGTGCTGTCGGGGGGCCCCGTGCGAGAGCTCCCTCCACGCT
GTCTGTCTGCAGCAACGACGCGAAAGCAGTTGTTCTGGTCCGATGGATAC
AAGGGCACTTACCAGTAGGCAAGGACACAAACTGTAATACCCGTCACCGC
AGCTATTGCTTTGGCGCGATCATAGCTTCCGGCCGCAGCCCCCCCCCCCC
CTCGGGGGTCTGTCCTTTGCATGATTTCTAGTCACCGTCCATGCCGGGCT
CACACGCCTCCTTTCGTCTTGTTTACTGCGTCTACACCCGTACTGGCGTT
AAAGGTGCGAGACGGACGGCCAGTACTGCCGTTACAGCCCCAGGGCTAAA
TCGGGACCCAAGCCCCAGACCGTGCGGAGGACAAAGTCGACGCCGTCGTC
GTCTCGGATGGTCACTCCTGCTTCCGCCCCCGCGACCCCTTATGCTTATG
TGACCCCTTATGTTTCTGAGACTGGTTATGCTTCGGCTGCTGTTGCTGAT
GCTGCTGCTGCTGCTGCTGCAACTGCTGCTGTCGTGGGAGCCAAGCGAGC
CGCGTCGCCGGTAAGAGCGTGTAGCGGTGGGTTCGTTTTGTTTCTTCACG
GGGGGCTTCGTGGGATCGATTTCTCCCCGTCCCCCCGTCTCCCCCGGTGT
GTCCATGCCGACATAACCACATGCACGATGTATTTATCGAGGTACAGCAC
GCGGGGCTGGACACGAACGAGTAAGAGGAGCGTTTCTGAATGAAATGCAT
GCCGCTGAGTCCGTCGTGTGGTGCACTTTTTCTGCGGCTTTTGGTGCAGA
AACGGCTGAGACAGCGCGGCGGTCGCGAAGCCCAGCTCGGCTCTCTCAAG
GCACTTGCCGTGGACCATGGTACTTTTAGTGCTCTCTTTGTTGCAGCCCT
TAAAACCCCAAAAATGTCGCCGCGCATGGATTACCTCTCCCAAGATGATA
GAAGTATGTGTTTGCAGCCACTGCCACCCGAGTTTCTTGCAACGCACGAC
GACAAACCTTTTCAAGTCCAAGAGCTCAATTGAGGCTCTCCTTCCAATGC
TGGTTCGAACTCTGACCTTGCGCCAGGGTCAGGATCAGGATCGCCGCGGG
ACGGGCGGTGAATCTACGTTATCTACGGCGCCTGGTGCTCGCGCTTCCTC
GCCGCTCACCGCATCGCCCGTGTCGTTGCTGCCGCAACCCGCCAAGGCGA
TGACTCCGACCACGGCGGTGGCCTTGGCGGCTTTAGCGGGAGCGGCGGCG
GCAGGGGGCTCGGTGCAAGCAGCGCTCGGGCCGGCGGAGGGTGCGACGAT
CACGGCGTTCGGGGACCTCGGGAGAGAAAGGGTGGTACCCGCAACGGGCG
TGGTGGGGACAGCGGCGGCGGCGGCGGCCATGTCTGCCGTGGCGGCAGCA
GACTGTGGGGGGGTTCTCGGAGTGGATGAGCCTGGCGCAGCCAGCGCTGC
TTCCAACGCTGGCGGCGGTGCTGCCACCACCGCTACCCCGGAAGCCCTAC
CTTGGGTTGCCGGAGGCCGGGGTCAGTAGGGGGCCCCGGTTGCGGAGGGG
GCACCCCCGCGGGGGAACGGAGATGGGGTTTGGATGTTGGAAAAAGGTTT
CAGGTTTAGATTTTTGCTGATATGGCAGGACAGGTCTATGGACTACTACT
GTATCTACTTCTGTATCAACCGATGCGCGCAGGGTGAAGATAGAGCCATG
TCGGGTGAAAGAGGAAGGGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1891:13211..15332-

>mRNA_L-elsbetiae_contig1891.5555.1 ID=mRNA_L-elsbetiae_contig1891.5555.1|Name=mRNA_L-elsbetiae_contig1891.5555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1560bp|location=Sequence derived from alignment at L-elsbetiae_contig1891:13211..15332- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAAAGCGTGTGACCGGTGTACGATGCGAAAAATTAAGTGCGACGG
GACGCCGATCATCTGCAAGCGATGCGGAAAGCGTGTGACCGGTGTACGAT
GCGAAAAATTAAGTGCGACGGGACGCCGATCATCTGCAAGCGGTGCGAGA
CGGACGGCCAGTACTGCCGTTACAGCCCCAGGGCTAAATCGGGACCCAAG
CCCCAGACCGTGCGGAGGACAAAGTCGACGCCGTCGTCGTCTCGGATGGT
CACTCCTGCTTCCGCCCCCGCGACCCCTTATGCTTATGTGACCCCTTATG
TTTCTGAGACTGGTTATGCTTCGGCTGCTGTTGCTGATGCTGCTGCTGCT
GCTGCTGCAACTGCTGCTGTCGTGGGAGCCAAGCGAGCCGCGTCGCCGGT
GCGAGACGGACGGCCAGTACTGCCGTTACAGCCCCAGGGCTAAATCGGGA
CCCAAGCCCCAGACCGTGCGGAGGACAAAGTCGACGCCGTCGTCGTCTCG
GATGGTCACTCCTGCTTCCGCCCCCGCGACCCCTTATGCTTATGTGACCC
CTTATGTTTCTGAGACTGGTTATGCTTCGGCTGCTGTTGCTGATGCTGCT
GCTGCTGCTGCTGCAACTGCTGCTGTCGTGGGAGCCAAGCGAGCCGCGTC
GCCGGGTCAGGATCAGGATCGCCGCGGGACGGGCGGTGAATCTACGTTAT
CTACGGCGCCTGGTGCTCGCGCTTCCTCGCCGCTCACCGCATCGCCCGTG
TCGTTGCTGCCGCAACCCGCCAAGGCGATGACTCCGACCACGGCGGTGGC
CTTGGCGGCTTTAGCGGGAGCGGCGGCGGCAGGGGGCTCGGTGCAAGCAG
CGCTCGGGCCGGCGGAGGGTGCGACGATCACGGCGTTCGGGGACCTCGGG
AGAGAAAGGGTGGTACCCGCAACGGGCGTGGTGGGGACAGCGGCGGCGGC
GGCGGCCATGTCTGCCGTGGCGGCAGCAGACTGTGGGGGGGTTCTCGGAG
TGGATGAGCCTGGCGCAGCCAGCGCTGCTTCCAACGCTGGCGGCGGTGCT
GCCACCACCGCTACCCCGGAAGCCCTACCTTGGGTTGCCGGAGGCCGGGG
TCAGTAGGGTCAGGATCAGGATCGCCGCGGGACGGGCGGTGAATCTACGT
TATCTACGGCGCCTGGTGCTCGCGCTTCCTCGCCGCTCACCGCATCGCCC
GTGTCGTTGCTGCCGCAACCCGCCAAGGCGATGACTCCGACCACGGCGGT
GGCCTTGGCGGCTTTAGCGGGAGCGGCGGCGGCAGGGGGCTCGGTGCAAG
CAGCGCTCGGGCCGGCGGAGGGTGCGACGATCACGGCGTTCGGGGACCTC
GGGAGAGAAAGGGTGGTACCCGCAACGGGCGTGGTGGGGACAGCGGCGGC
GGCGGCGGCCATGTCTGCCGTGGCGGCAGCAGACTGTGGGGGGGTTCTCG
GAGTGGATGAGCCTGGCGCAGCCAGCGCTGCTTCCAACGCTGGCGGCGGT
GCTGCCACCACCGCTACCCCGGAAGCCCTACCTTGGGTTGCCGGAGGCCG
GGGTCAGTAG
back to top