mRNA_L-elsbetiae_contig18903.5553.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18903.5553.1
Unique NamemRNA_L-elsbetiae_contig18903.5553.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A6H5L0H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H7_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.270e-52
Identity = 87/99 (87.88%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            + GHVDMVTEKNS S+HDFLKDPIRLLVEGDWLTADGTTLGADNGIGV+AAL LLD+P SSG +LPPLECLFTVEEEIGLVGAF LDGS+VKGRTMLNL
Sbjct:  134 IQGHVDMVTEKNSGSSHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVSAALALLDMPVSSGARLPPLECLFTVEEEIGLVGAFELDGSLVKGRTMLNL 232
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BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A7C7KE84_9ARCH (M20/M25/M40 family metallo-hydrolase (Fragment) n=1 Tax=Marine Group III euryarchaeote TaxID=2173149 RepID=A0A7C7KE84_9ARCH)

HSP 1 Score: 145 bits (365), Expect = 4.180e-42
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            +  HVDMV EKN  S HDF+KDP++L  +GDWL A+GTTLGADNGIGVAAAL+LLD P  S  KLPPLECLFTV+EE GL GAF L+G ++KGRTMLNL
Sbjct:   74 IQSHVDMVCEKNRDSNHDFMKDPLKLYTDGDWLKAEGTTLGADNGIGVAAALSLLDTPQDS--KLPPLECLFTVDEETGLTGAFALNGEIIKGRTMLNL 170
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BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A7J4D1M1_9ARCH (Beta-Ala-His dipeptidase (Fragment) n=1 Tax=Marine Group III euryarchaeote TaxID=2173149 RepID=A0A7J4D1M1_9ARCH)

HSP 1 Score: 145 bits (365), Expect = 2.310e-40
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            +  HVDMV EKN  S HDF+KDP++L  +GDWL A+GTTLGADNGIGVAAAL+LLD P  S  KLPPLECLFTV+EE GL GAF L+G ++KGRTMLNL
Sbjct:   74 IQSHVDMVCEKNRDSNHDFMKDPLKLYTDGDWLKAEGTTLGADNGIGVAAALSLLDAPQDS--KLPPLECLFTVDEETGLTGAFALNGEIIKGRTMLNL 170
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BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A7S3YYR9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYR9_9EUKA)

HSP 1 Score: 142 bits (359), Expect = 6.590e-39
Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            + GHVDMVTEKN+   HDF KDPI LL EGDW+TA GTTLGADNGIGVAAAL LL +P ++  KLPPLECLFTV+EE GL GA  L G+M+KG+TMLNL
Sbjct:  133 IQGHVDMVTEKNNDVAHDFSKDPITLLREGDWITAKGTTLGADNGIGVAAALALLTMPTTT--KLPPLECLFTVDEETGLTGAKQLKGTMLKGKTMLNL 229
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BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: E1ZS31_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZS31_CHLVA)

HSP 1 Score: 145 bits (365), Expect = 7.350e-39
Identity = 69/99 (69.70%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            + GHVDMV EKN+  +HDF+ DPIRL+ +GDW+TADGTTLG+DNGIGV AAL LLDLP S    LPPLECLFT++EE GL GAF LDG+M+ GRT+LNL
Sbjct:  133 IQGHVDMVCEKNADVSHDFMSDPIRLVRDGDWITADGTTLGSDNGIGVCAALALLDLPQSE--LLPPLECLFTIDEETGLTGAFQLDGTMLHGRTLLNL 229
[Close]
BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A2P6UZD3_9CHLO (Aminoacyl-histidine dipeptidase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZD3_9CHLO)

HSP 1 Score: 143 bits (361), Expect = 1.830e-38
Identity = 68/99 (68.69%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            + GHVDMV EKN+   HDF+ DPI+L+ + DW+TADGTTLG+DNGIGV AAL LLDLPA+    LPPLECLFT++EE GL GAF LDGSM++GRT+LNL
Sbjct:   79 VQGHVDMVCEKNAEVAHDFMADPIKLVRKDDWITADGTTLGSDNGIGVCAALALLDLPATE--TLPPLECLFTIDEETGLTGAFELDGSMLRGRTLLNL 175
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BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A7S2U1B6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U1B6_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 3.900e-38
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            + GHVDMVTEKN+   HDF KDPI L+ EGDW+TA GTTLGADNGIGVAAAL LL +P ++  KLPPLECLFTV+EE GL GA  L G M+KG+TMLNL
Sbjct:   73 IQGHVDMVTEKNNDINHDFSKDPISLMREGDWITAKGTTLGADNGIGVAAALALLTMPTTT--KLPPLECLFTVDEETGLTGAKQLKGEMIKGKTMLNL 169
[Close]
BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A2A3SYY3_9EURY (Cytosol nonspecific dipeptidase n=3 Tax=Archaea TaxID=2157 RepID=A0A2A3SYY3_9EURY)

HSP 1 Score: 142 bits (357), Expect = 4.700e-38
Identity = 69/99 (69.70%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            +  HVDMV EKN  S HDF+KDP++L  + DWL A+GTTLGADNGIGVAAAL+LLD P  S  KLPPLECLFTV+EE GL GAF L+G ++KGRTMLNL
Sbjct:   74 IQSHVDMVCEKNRDSNHDFMKDPLKLYTDEDWLKAEGTTLGADNGIGVAAALSLLDTPQDS--KLPPLECLFTVDEETGLTGAFALNGEIIKGRTMLNL 170
[Close]
BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A7S4DRV3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DRV3_9EUKA)

HSP 1 Score: 142 bits (359), Expect = 5.510e-38
Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            + GHVDMVTEKN+   HDF KDPI LL EGDW+TA GTTLGADNGIGVAAAL LL +P ++  KLPPLECLFTV+EE GL GA  L G+M+KG+TMLNL
Sbjct:  133 IQGHVDMVTEKNNDVAHDFSKDPITLLREGDWITAKGTTLGADNGIGVAAALALLTMPTTT--KLPPLECLFTVDEETGLTGAKQLKGTMLKGKTMLNL 229
[Close]
BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Match: A0A2D6UT21_9EURY (Cytosol nonspecific dipeptidase n=7 Tax=Archaea TaxID=2157 RepID=A0A2D6UT21_9EURY)

HSP 1 Score: 141 bits (356), Expect = 6.470e-38
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    4 LPGHVDMVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLDLPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL 300
            +  HVDMV EKNS   HDF +DPIRLL +GDWLTADGTTLGADNGIGVA AL LL++ A++  +LPPLECLFTV+EE GL GAF LDG++++GRT+LNL
Sbjct:   74 IQSHVDMVCEKNSDVEHDFNRDPIRLLRDGDWLTADGTTLGADNGIGVATALALLEMAANA--RLPPLECLFTVDEETGLTGAFALDGALLQGRTLLNL 170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18903.5553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0H7_9PHAE2.270e-5287.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C7KE84_9ARCH4.180e-4270.71M20/M25/M40 family metallo-hydrolase (Fragment) n=... [more]
A0A7J4D1M1_9ARCH2.310e-4070.71Beta-Ala-His dipeptidase (Fragment) n=1 Tax=Marine... [more]
A0A7S3YYR9_9EUKA6.590e-3971.72Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
E1ZS31_CHLVA7.350e-3969.70Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A2P6UZD3_9CHLO1.830e-3868.69Aminoacyl-histidine dipeptidase n=1 Tax=Micractini... [more]
A0A7S2U1B6_9EUKA3.900e-3870.71Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2A3SYY3_9EURY4.700e-3869.70Cytosol nonspecific dipeptidase n=3 Tax=Archaea Ta... [more]
A0A7S4DRV3_9EUKA5.510e-3871.72Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A2D6UT21_9EURY6.470e-3869.70Cytosol nonspecific dipeptidase n=7 Tax=Archaea Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18903contigL-elsbetiae_contig18903:1582..2606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score135.6
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog554065.XP_005843446.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase family M20/M25/M40
EggNOG OGs2QRV8@2759,34JRC@3041,37ZBJ@33090,COG2195@1
COG Functional cat.E
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size300
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18903.5553.1prot_L-elsbetiae_contig18903.5553.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18903 1582..2585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.4183168-CDS-L-elsbetiae_contig18903:1581..17091622815786.4183168-CDS-L-elsbetiae_contig18903:1581..1709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18903 1582..1709 -
1691683101.814361-CDS-L-elsbetiae_contig18903:1581..17091691683101.814361-CDS-L-elsbetiae_contig18903:1581..1709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18903 1582..1709 -
1622815786.4294782-CDS-L-elsbetiae_contig18903:2434..25851622815786.4294782-CDS-L-elsbetiae_contig18903:2434..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18903 2435..2585 -
1691683101.8252182-CDS-L-elsbetiae_contig18903:2434..25851691683101.8252182-CDS-L-elsbetiae_contig18903:2434..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18903 2435..2585 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.4399104-UTR-L-elsbetiae_contig18903:2585..26061622815786.4399104-UTR-L-elsbetiae_contig18903:2585..2606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18903 2586..2606 -
1691683101.8410754-UTR-L-elsbetiae_contig18903:2585..26061691683101.8410754-UTR-L-elsbetiae_contig18903:2585..2606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18903 2586..2606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18903.5553.1

>prot_L-elsbetiae_contig18903.5553.1 ID=prot_L-elsbetiae_contig18903.5553.1|Name=mRNA_L-elsbetiae_contig18903.5553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MVTEKNSASTHDFLKDPIRLLVEGDWLTADGTTLGADNGIGVAAALTLLD
LPASSGVKLPPLECLFTVEEEIGLVGAFNLDGSMVKGRTMLNL
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mRNA from alignment at L-elsbetiae_contig18903:1582..2606-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18903.5553.1 ID=mRNA_L-elsbetiae_contig18903.5553.1|Name=mRNA_L-elsbetiae_contig18903.5553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1025bp|location=Sequence derived from alignment at L-elsbetiae_contig18903:1582..2606- (Laminarionema elsbetiae ELsaHSoW15)
GCGCTCCCAGGGCACGTGGACATGGTCACCGAGAAAAATTCCGCGTCGAC
CCACGACTTTCTCAAGGATCCCATCCGGCTGCTGGTGGAAGGGGACTGGC
TCACGGCGGACGGCACAACGCTCGGTGCCGACAACGGGATTGGCGTCGCA
GCAGCCTTGACGCTGTTAGACCGTAAGTAACAGGCTGCCCCCCCGGAAGT
AACACCGCAAGCTTGATACGAGGTCACATAGCTTGTCGTGGGGTCTTGCC
GGGGCTAGTAAATACTATCTGAAGAGCCCCCCCCCCCCCACCGGGTTAAA
CGTTGACGTCCGAGTGCAAGTAGCACATCCCCATCCGGATTTTTTTGTTC
GCATGCTTTGAGAAAGTCAGCAGCTGGGCTCTTCATGGCTGTGGCGAGAG
CAAGGCGTGTCTAGCGCTACTGTGATAGTGGTCGCCTCGCGTCATGAGTC
TACATAGATCTTAGATCTATCCCACATCCCACCGCTGCAATTTGTTTGAG
ACGGGATATTCAGCAATATACTCCGTCTACACCTCATGGAAATCGAAAGC
GGATTGTTGCCAGACACAGCCAGTTATACGCAGAGAGGTGCTGTATGAGA
TAGCATAGACCTGTAGCAACTCTGTGCGACGGGCGCCGGTGACATGGAGG
GTATATGGTTTTCGACCAACACGCGTTTTGGTTTGTTGCACGCGACGGTG
CTTTCTGCCATGCATGTAAATTCTCCGGAGAACATACCACCATATAGGCG
CACTTTGATGCACATCGGAAGTACATAAGTGCGCCTGCCAGCCTTCGCTC
CGTCGTAACTGGCGCGCAGCGCCGACTACGTACTGCTGTGGGTCACGCAG
TACTAACTGTCACCGTATTTCCCCCGCCTCTCGGCCTTTGCTTGTAGTGC
CGGCGTCCTCGGGCGTGAAGCTCCCCCCGCTGGAGTGCCTCTTCACCGTG
GAGGAAGAGATCGGACTAGTCGGCGCGTTTAATCTGGACGGGAGCATGGT
GAAAGGGCGAACGATGCTAAACCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18903:1582..2606-

>mRNA_L-elsbetiae_contig18903.5553.1 ID=mRNA_L-elsbetiae_contig18903.5553.1|Name=mRNA_L-elsbetiae_contig18903.5553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig18903:1582..2606- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCACCGAGAAAAATTCCGCGTCGACCCACGACTTTCTCAAGGATCC
CATCCGGCTGCTGGTGGAAGGGGACTGGCTCACGGCGGACGGCACAACGC
TCGGTGCCGACAACGGGATTGGCGTCGCAGCAGCCTTGACGCTGTTAGAC
CATGGTCACCGAGAAAAATTCCGCGTCGACCCACGACTTTCTCAAGGATC
CCATCCGGCTGCTGGTGGAAGGGGACTGGCTCACGGCGGACGGCACAACG
CTCGGTGCCGACAACGGGATTGGCGTCGCAGCAGCCTTGACGCTGTTAGA
CCTGCCGGCGTCCTCGGGCGTGAAGCTCCCCCCGCTGGAGTGCCTCTTCA
CCGTGGAGGAAGAGATCGGACTAGTCGGCGCGTTTAATCTGGACGGGAGC
ATGGTGAAAGGGCGAACGATGCTAAACCTGTGCCGGCGTCCTCGGGCGTG
AAGCTCCCCCCGCTGGAGTGCCTCTTCACCGTGGAGGAAGAGATCGGACT
AGTCGGCGCGTTTAATCTGGACGGGAGCATGGTGAAAGGGCGAACGATGC
TAAACCTG
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