mRNA_L-elsbetiae_contig18890.5548.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18890.5548.1
Unique NamemRNA_L-elsbetiae_contig18890.5548.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18890.5548.1 vs. uniprot
Match: A0A6H5KIS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.050e-8
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   13 IMFDCHAHLTDPYFREGIDEALAQAEDVGVVGIIAVSETSEDAVKV 150
            +MFDCHAHLTD    EG+ + L +AE  GV GI+AVSE+ +DA  V
Sbjct:   45 VMFDCHAHLTDSSLAEGLHQTLLEAEAAGVTGIVAVSESLDDATPV 90
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BLAST of mRNA_L-elsbetiae_contig18890.5548.1 vs. uniprot
Match: D7FNX7_ECTSI (TatD DNase domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX7_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   16 MFDCHAHLTDPYFREGIDEALAQAEDVGVVGIIAVSETSEDAVKV 150
            MFDCHAHLTD    EG+ + L +AE  GV GI+AVSE+ +DA  V
Sbjct:    1 MFDCHAHLTDSSLAEGLQQTLLEAEAAGVTGIVAVSESLDDATPV 45
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18890.5548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIS3_9PHAE1.050e-856.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNX7_ECTSI1.580e-857.78TatD DNase domain containing 3 n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18890contigL-elsbetiae_contig18890:1862..2038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size162
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.7972596-UTR-L-elsbetiae_contig18890:1861..18761622815785.7972596-UTR-L-elsbetiae_contig18890:1861..1876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18890 1862..1876 +
1691683101.374204-UTR-L-elsbetiae_contig18890:1861..18761691683101.374204-UTR-L-elsbetiae_contig18890:1861..1876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18890 1862..1876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.8089292-CDS-L-elsbetiae_contig18890:1876..20381622815785.8089292-CDS-L-elsbetiae_contig18890:1876..2038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 1877..2038 +
1691683101.3821447-CDS-L-elsbetiae_contig18890:1876..20381691683101.3821447-CDS-L-elsbetiae_contig18890:1876..2038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 1877..2038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18890.5548.1prot_L-elsbetiae_contig18890.5548.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18890 1877..2038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18890.5548.1

>prot_L-elsbetiae_contig18890.5548.1 ID=prot_L-elsbetiae_contig18890.5548.1|Name=mRNA_L-elsbetiae_contig18890.5548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
MFDCHAHLTDPYFREGIDEALAQAEDVGVVGIIAVSETSEDAVKVRRHLP
NCD*
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mRNA from alignment at L-elsbetiae_contig18890:1862..2038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18890.5548.1 ID=mRNA_L-elsbetiae_contig18890.5548.1|Name=mRNA_L-elsbetiae_contig18890.5548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig18890:1862..2038+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCAGCCGCATCATGTTCGACTGCCATGCCCACCTCACCGATCCTTA
TTTCAGAGAGGGAATAGATGAAGCTCTTGCACAGGCGGAAGATGTGGGGG
TGGTTGGAATCATTGCGGTGTCCGAAACTTCTGAGGACGCTGTGAAGGTA
AGGAGGCATCTACCGAATTGTGACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18890:1862..2038+

>mRNA_L-elsbetiae_contig18890.5548.1 ID=mRNA_L-elsbetiae_contig18890.5548.1|Name=mRNA_L-elsbetiae_contig18890.5548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig18890:1862..2038+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGACTGCCATGCCCACCTCACCGATCCTTATTTCAGAGAGGGAAT
AGATGAAGCTCTTGCACAGGCGGAAGATGTGGGGGTGGTTGGAATCATTG
CGGTGTCCGAAACTTCTGAGGACGCTGTGAAGGTAAGGAGGCATCTACCG
AATTGTGACTAGATGTTCGACTGCCATGCCCACCTCACCGATCCTTATTT
CAGAGAGGGAATAGATGAAGCTCTTGCACAGGCGGAAGATGTGGGGGTGG
TTGGAATCATTGCGGTGTCCGAAACTTCTGAGGACGCTGTGAAGGTAAGG
AGGCATCTACCGAATTGTGACTAG
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