mRNA_L-elsbetiae_contig18890.5546.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18890.5546.1
Unique NamemRNA_L-elsbetiae_contig18890.5546.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18890.5546.1 vs. uniprot
Match: D7FNX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNX6_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.180e-49
Identity = 107/211 (50.71%), Postives = 123/211 (58.29%), Query Frame = 1 
Query:    1 MTEAAVENTGEVDEHQARQVEISQLLKQRAPLMCPHIVPRAFKEALAGVQMLLTSDAGNLSAPA--------------AVASXXXXXXXXXXXXXXXXXXXXXRHVVLTTETDIAARTFRITAAKFGERIDAVLSDLELLMDLHLNASEEELEPYATRFASANSLDVTGRTAALALQEVCSLAYSLQVAASNIPGWTGFVGSSQLPLAGGV 591
            MTE      GEVDE Q R +EI+ LLK++AP + P ++PR +K A A +  L ++      A A              A A                       HVVL TETDIA RTFRITAAK G RIDA LSDL LLMDLHLNA  +ELEPY  RFA+AN LD +  TAALAL   CSLAY+LQVA S+I GW GFVGS  LPLAG V
Sbjct:    1 MTEGVA--MGEVDEVQDRVMEIAALLKKKAPHLAPSVIPRPYKHAAANIVTLCSTPRQRADAEAFLASKAESATVDDVAAAGERGRGEEGQQIESEDAAEGGRHHVVLETETDIATRTFRITAAKLGGRIDATLSDLNLLMDLHLNAPRQELEPYVERFAAANELDPS--TAALALHGACSLAYALQVATSSIAGWNGFVGSHPLPLAGDV 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18890.5546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNX6_ECTSI5.180e-4950.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18890contigL-elsbetiae_contig18890:1..1639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_004730.1
Exons4
Model size591
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18890.5546.1prot_L-elsbetiae_contig18890.5546.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18890 1..1639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.73055-CDS-L-elsbetiae_contig18890:0..611622815785.73055-CDS-L-elsbetiae_contig18890:0..61Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 1..61 -
1691683101.3308163-CDS-L-elsbetiae_contig18890:0..611691683101.3308163-CDS-L-elsbetiae_contig18890:0..61Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 1..61 -
1622815785.7432282-CDS-L-elsbetiae_contig18890:416..5351622815785.7432282-CDS-L-elsbetiae_contig18890:416..535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 417..535 -
1691683101.3420558-CDS-L-elsbetiae_contig18890:416..5351691683101.3420558-CDS-L-elsbetiae_contig18890:416..535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 417..535 -
1622815785.754004-CDS-L-elsbetiae_contig18890:798..8761622815785.754004-CDS-L-elsbetiae_contig18890:798..876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 799..876 -
1691683101.353656-CDS-L-elsbetiae_contig18890:798..8761691683101.353656-CDS-L-elsbetiae_contig18890:798..876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 799..876 -
1622815785.7648776-CDS-L-elsbetiae_contig18890:1306..16391622815785.7648776-CDS-L-elsbetiae_contig18890:1306..1639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 1307..1639 -
1691683101.36366-CDS-L-elsbetiae_contig18890:1306..16391691683101.36366-CDS-L-elsbetiae_contig18890:1306..1639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 1307..1639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18890.5546.1

>prot_L-elsbetiae_contig18890.5546.1 ID=prot_L-elsbetiae_contig18890.5546.1|Name=mRNA_L-elsbetiae_contig18890.5546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
MTEAAVENTGEVDEHQARQVEISQLLKQRAPLMCPHIVPRAFKEALAGVQ
MLLTSDAGNLSAPAAVASAAAAEPAEGGTEEENVDDDGGRHVVLTTETDI
AARTFRITAAKFGERIDAVLSDLELLMDLHLNASEEELEPYATRFASANS
LDVTGRTAALALQEVCSLAYSLQVAASNIPGWTGFVGSSQLPLAGGV
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mRNA from alignment at L-elsbetiae_contig18890:1..1639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18890.5546.1 ID=mRNA_L-elsbetiae_contig18890.5546.1|Name=mRNA_L-elsbetiae_contig18890.5546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1639bp|location=Sequence derived from alignment at L-elsbetiae_contig18890:1..1639- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGAAGCAGCCGTAGAAAACACGGGAGAGGTGGACGAGCATCAGGC
GCGACAAGTGGAGATATCCCAATTGCTCAAGCAGCGTGCACCGTTGATGT
GTCCACACATTGTGCCGCGAGCTTTCAAGGAAGCACTCGCTGGCGTGCAA
ATGCTCCTGACATCCGACGCTGGAAATCTTTCGGCGCCTGCCGCTGTCGC
GTCTGCTGCTGCTGCGGAACCAGCTGAGGGAGGGACGGAGGAGGAGAATG
TTGACGACGATGGAGGTAGACATGTGGTCCTAACGACCGAGACAGATATC
GCAGCACGAACGTTTCGGATCACTGCGGCGAAGGTATGCACATGCGTGGA
TGAACAAACGCAACTTGGGTATCATCCGTGAGGGCCAGTACTACGCCAGG
ATTATGGTAGAAAGGTGGTAATTTTTTGGCTACAATACATAGTCTATGTA
CTACCGAAAACCTCACAGGTTGGTACCCATAGACTAGTCTAGACAACCTC
AGACTAGAATTATGCCACCAAAAAGAGACATTAACTGTCTGTGCCATTGT
GACTGGGATGATCTTCGCGCTCCACCGCTGCAATATATATAAGCGCAGGA
TTTTGTACATGGGGACCACACGTTTTTCGGCATTGTTGTCCGTATCGTTG
TACAAAACACTTTGATGAAACATCAACACACATGAACATCACTGCATCTC
CATGCCGCTGTCGATGGTGCTTCAACTTTGAACCGATTAACCCCCACTGT
TTAACAATGGCAGTTCGGGGAAAGGATAGATGCAGTCCTGTCGGACCTGG
AGCTCCTTATGGACCTGCACCTAAACGCCAGTGAGGAAGAGGTAAAACAT
CATGCAGCGGTACAACGGGCTTTCCTGAAGCGCTTGCTGTCCGGGAATTA
CATGCATACCTAGATGCACGTCCTCCACGCGCAGGCAAGGTTGCAGCCAA
CGTGTTTTTCGCTTTTTGGTCAGATCTCTCAGGCTGCATAGCCCGAGACG
CGCCTGCTGCTACATGTGCTACCCTTGCCTCCCTCACACACGCCTGACCT
TGTCGTATTGTCATTTCCCCACGTACCCGGCGCGTCGGCGGGTCTTTTGT
TCAGTTGGAGCCGTATGCCACGCGGTTCGCGTCGGCGAACAGCTTGGATG
TGACCGGCCGGACGGCCGCGTTGGCGTTGCAGGAGGTCTGCAGCCTAGCC
TACTCTCTCCAGGTGGCGGCGAGGTGAACACAGCAGCGGTTGGGCCACGA
TGTTGGCGGCCACGTACATCTATACAAAACAAAATTTCATAACTACTGTT
TTTCTTCCAAAAGGGTTGGGTCTTACGACTGCACCAACACCGACCAGTGC
AGCCCGAGCGGTGGAGGTGCCCCGAGGAAGTGCCCCGAACTGCGAACTGC
GAACTGCGAGCAGAGTGTGTTGGACAGTAGTGGATGTGTGGGTGCACTAT
GTAGCTTGCTCCCATATCTCCTACCAGTGCGTTATTCAGGTATGGAGCGG
GCGCAGAGTCGTCGCCAGCCTCCTTTATTTCCCACTGACCCCCCCCCCCC
CCTGCCCCTCTTTGTGTGGCCGTCTCAGCAATATCCCTGGCTGGACCGGA
TTTGTGGGTTCCTCACAGCTCCCGCTGGCGGGGGGTGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18890:1..1639-

>mRNA_L-elsbetiae_contig18890.5546.1 ID=mRNA_L-elsbetiae_contig18890.5546.1|Name=mRNA_L-elsbetiae_contig18890.5546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig18890:1..1639- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGAAGCAGCCGTAGAAAACACGGGAGAGGTGGACGAGCATCAGGC
GCGACAAGTGGAGATATCCCAATTGCTCAAGCAGCGTGCACCGTTGATGT
GTCCACACATTGTGCCGCGAGCTTTCAAGGAAGCACTCGCTGGCGTGCAA
ATGCTCCTGACATCCGACGCTGGAAATCTTTCGGCGCCTGCCGCTGTCGC
GTCTGCTGCTGCTGCGGAACCAGCTGAGGGAGGGACGGAGGAGGAGAATG
TTGACGACGATGGAGGTAGACATGTGGTCCTAACGACCGAGACAGATATC
GCAGCACGAACGTTTCGGATCACTGCGGCGAAGATGACGGAAGCAGCCGT
AGAAAACACGGGAGAGGTGGACGAGCATCAGGCGCGACAAGTGGAGATAT
CCCAATTGCTCAAGCAGCGTGCACCGTTGATGTGTCCACACATTGTGCCG
CGAGCTTTCAAGGAAGCACTCGCTGGCGTGCAAATGCTCCTGACATCCGA
CGCTGGAAATCTTTCGGCGCCTGCCGCTGTCGCGTCTGCTGCTGCTGCGG
AACCAGCTGAGGGAGGGACGGAGGAGGAGAATGTTGACGACGATGGAGGT
AGACATGTGGTCCTAACGACCGAGACAGATATCGCAGCACGAACGTTTCG
GATCACTGCGGCGAAGTTCGGGGAAAGGATAGATGCAGTCCTGTCGGACC
TGGAGCTCCTTATGGACCTGCACCTAAACGCCAGTGAGGAAGAGTTCGGG
GAAAGGATAGATGCAGTCCTGTCGGACCTGGAGCTCCTTATGGACCTGCA
CCTAAACGCCAGTGAGGAAGAGTTGGAGCCGTATGCCACGCGGTTCGCGT
CGGCGAACAGCTTGGATGTGACCGGCCGGACGGCCGCGTTGGCGTTGCAG
GAGGTCTGCAGCCTAGCCTACTCTCTCCAGGTGGCGGCGAGTTGGAGCCG
TATGCCACGCGGTTCGCGTCGGCGAACAGCTTGGATGTGACCGGCCGGAC
GGCCGCGTTGGCGTTGCAGGAGGTCTGCAGCCTAGCCTACTCTCTCCAGG
TGGCGGCGAGCAATATCCCTGGCTGGACCGGATTTGTGGGTTCCTCACAG
CTCCCGCTGGCGGGGGGTGTTCAATATCCCTGGCTGGACCGGATTTGTGG
GTTCCTCACAGCTCCCGCTGGCGGGGGGTGTT
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