mRNA_L-elsbetiae_contig1888.5543.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI) HSP 1 Score: 519 bits (1337), Expect = 1.410e-159 Identity = 312/474 (65.82%), Postives = 345/474 (72.78%), Query Frame = 1 Query: 1351 GAVKLLGLKAEFMPVAQGAWEDAVCLGDSSGSEEFGSSRRARGGRGSPVRAAPAAGAAPTSVSGIEGEEGGKGAGARAGGKGKDGREKGREXXXXXXXXXXXXXXXXXATFPGQGKPGANGTAAGETKVQPTWALYAFALVCNGSSPK-------APRRRVEAAAFPAPEGTPWIDPPSVLNPQVDGGGWESQVLLHDSQKLRKPKLPMYQDDPDMLFGALHTPRPTLKILQTEAQQENSHILERTSRRQMATEKQKRLQSAAMKTGYTINTLGEGKASRAENNIRAVIVRPPHHASPAEDKILIAPPKSWEDIRNLHRPRMGLSNLQPNQTSVIRLPRKPKSVQQGGVAGQGGGGLGARIGEAVSMPMHREKDLLPLDARSTFVVVEYVEERPPLLGSTGMASSIITFVRNSSRRPKMGGPAEADTNEGAAGFGQRRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHY 2751 GAV+LLGLKAEFMPV+QGAWEDAVCLGDS S+ R GGR R++P XXXXXXXXXXXXXXXXX + GA G A G + + A A + AFPA EG+PWIDPPSVLNPQVDGGGWESQVLL DSQKL+KP +P+Y DDPDMLFGALHTPRP+L+ILQTEAQQENSHILERT+RRQMATEKQKRLQSAAMKTGYTINT+G+GKASRAE+NIRAVI+RPPHHASPAEDK+LIA PKSWEDIRNLHRPRM + L PNQ S++RLPRKPK++Q GG QGGGG GARIGE VSMPMHREKDLLPL++ STFVVVEYVEERPPLLGSTGMAS+IITFVR+SSRRP +GG +RRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH+ Sbjct: 272 GAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGR---SRSSPXXXXXXXXXXXXX-----------------------XXXXXXXXXXXXXXXXXXXXXXDRTVEDGARGAAEGISGSKKPAAXXXXXXXXXXXXXXXXXXXRAATGMGMRTTAFPAAEGSPWIDPPSVLNPQVDGGGWESQVLLDDSQKLKKPTIPVYLDDPDMLFGALHTPRPSLRILQTEAQQENSHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKVLIAAPKSWEDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGG---QGGGGFGARIGEVVSMPMHREKDLLPLESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRP-IGGI-------------ERRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHH 702
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: A0A835ZF46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF46_9STRA) HSP 1 Score: 163 bits (412), Expect = 4.380e-39 Identity = 112/308 (36.36%), Postives = 164/308 (53.25%), Query Frame = 1 Query: 1888 GGGWESQVLLHDSQKLRKPKLPMYQDDPDMLFGALHTPRPTLKI-LQTEAQQENSHIL-ERTSRRQMATEKQKRLQSAAMKTGYTINTLGEGKASRAENNIRAVIVRPPHHASPAEDKILIAPPKSWEDIRNLHRPRMGLSNLQPNQTSVIRLPRKPKSVQQGGVAGQGGGGLGARIGEAVSMPMHREKDLLPLDARSTFVVVEYVEERPPLLGSTGMASSIITFVRNS-------------------SRRPKMGGPAEADTNEGAAGFGQRRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 2748 G W S V+ + Q+ R+P+L M Q D ++ TPRP L+ + TEA +E+S +L +R ++ +MA +K +RL SAA TG+ + K + +R V V PP HA PA +K+L+ P+ E++R RPR+ + + L K Q V +GG + M RE+DL+P + + F++VEYVEERPPLL +TGMAS +I + R++ +R+ G AE D GQ + L PQE+SPF+GEIR G Q SICN L+RAP+F+H Sbjct: 66 GRAWLSDVVWDERQRARRPQLIMSQRDMELFVTKEATPRPVLRARVVTEAGREDSAVLTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRP-EEVRAFRRPRVARLLSSGQRLLLKSLGAKAAGGQMEMVTLRGGRTMST---------MRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFG--AEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEH 361
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: A0A6H5JW67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW67_9PHAE) HSP 1 Score: 128 bits (322), Expect = 3.990e-27 Identity = 61/79 (77.22%), Postives = 67/79 (84.81%), Query Frame = 1 Query: 49 VDGLLFWSPRWQPTGLEGENYFLGVVPKVDAVDFHDSGEEESGNYDLIQDIVTEETYKVARDQALEFYASGDGPRLERA 285 VDG+L W P GLEGE +F VVPKVD VDFHDSGEEESGNYDL++D+VTEETYKVA+DQALEFYASG GPRLERA Sbjct: 31 VDGILLWGRSELPNGLEGEQFFPDVVPKVDPVDFHDSGEEESGNYDLVEDLVTEETYKVAKDQALEFYASGSGPRLERA 109
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: M4BEB5_HYAAE (Bromo domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEB5_HYAAE) HSP 1 Score: 79.3 bits (194), Expect = 3.060e-11 Identity = 82/320 (25.62%), Postives = 135/320 (42.19%), Query Frame = 1 Query: 1861 PSVLNPQVDGGGWESQVLLHDSQKLRKPKLPMYQDDPDMLFGA--LHTPRPTLKILQTE---AQQENSHI-LERTSRRQMATEKQKRLQSAAMKTGYTINTLGEGKAS---RAENNIRAVIVRPPHHASPAEDKILIAPPKSWEDIRNLHRPRMGLSNLQPNQTSVIRLPRKPKSVQQGGVAGQGGGGLGARIGEAVSMPMHREKDLLPLDARSTFVVVEYVEERPPLLGSTGMASSIITFVRNSSRRPKMGGPAEADTNEGAAGFGQRRELSPQ---------------EDSPFLGEIRPGSEQASICNGLFRAPIFKH 2748 P LN ++ W + + +Q + + KL + +D +++ + RPTL+I + + A+Q + + +R ++Q E L+ + T G GK S R NI V HH+ PA L P +R+ HRPR G + RL P G L + A+ + + DL P A +++EY E+RPP+L + GMAS I+ + R P + T+ G G + R+ P+ ++SPF+G+I PG S+ + L++ PIF H Sbjct: 341 PCPLNKELLDDSWVAAIGWRSTQDMPESKLVLDDNDASLIYSVSQMEDVRPTLRIPERKLGAAEQRLAQLDKQRIEKKQRIDEVMGNLEFGEETAEGRLGTEGSGKKSKDTRVVKNIGYV-----HHSLPAIKLSLTKPELPKTKLRDFHRPR-GKFKISE------RLDFYPPP--------SGAAKLAPQEDSAMVTQIKKSSDLSPT-AGGKLILIEYTEQRPPMLSNPGMASRILHYWRP---------PEDTSTSLGILGKKKARKTRPKPPDMEMGQVITLGDHDESPFVGDIPPGRVVTSLNSKLYKVPIFPH 630
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: A0A7I8K4E9_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K4E9_SPIIN) HSP 1 Score: 78.6 bits (192), Expect = 5.170e-11 Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 1 Query: 2440 REKDLLPLDARSTFVVVEYVEERPPLLGSTGMASSIITFVRNSSRRPKMGGPAEADTNEGAAGFGQRRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 2748 R+ DL D R+ +++EY EERP LLG+ GM + I + R +PK G A + G G G L P ++SPFLG+I PGS Q S+ ++RAP+F H Sbjct: 631 RKSDLSLRDGRA--LLMEYSEERPLLLGNIGMGARICAYYR----KPKHGDQAPSPPRNGNDGLGDVITLDPADESPFLGDISPGSSQLSLETNMYRAPLFLH 727
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: A0A1V9ZB49_9STRA (Transcription initiation factor TFIID subunit 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB49_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 6.810e-9 Identity = 68/307 (22.15%), Postives = 132/307 (43.00%), Query Frame = 1 Query: 1870 LNPQVDGGGWESQVLLHDSQKLRKPKLPMYQDDPDMLFG--ALHTPRPTLKILQTE--AQQENSHILERTSRRQMATEKQKRLQSAAMKTGYTINT----LGEGKASRAENNIRAVIVRPPHHASPAEDKILIAPPKSWEDIRNLHRPRMGLSNLQPNQTSVIRLPRKPKSVQQGGVAGQGGGGLGARIGEAVSMPMHREKDLLPLDARSTFVVVEYVEERPPLLGSTGMASSIITFVRNSSR-----RPK-MGGPAEADTNEGAAGFGQRRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 2748 LNP ++ W + + + + ++ + ++D ++ + R TL+I + + ++ +L + + EK R+ + ++T +G R ++ + HH+ PA L P S +R HRPR + N+ V+ + + V + + + + + DL P A +++EY+E++PP+L + GMAS I+ + R + PK G A+ + A GQ L +D+PF+G++ PG S+ + LF+ PIF+H Sbjct: 236 LNPSLEDDAWLNAIAWDHCLDMPRSEVILDENDKHLVLTNPLVENVRATLRIPERKLGVHEKRQELLNKQKK-----EKTDRINDVMGNLAFGVDTAAGRVGSDDLKRNKDTRIVKHMGHVHHSLPAIKLSLTKPELSKPKLREFHRPR---GKFKINERLVMVHAKDAEKVTKKMTE--------LEMTDPTLSQIKKTSDLNPT-AGGKLILLEYIEQKPPMLSNPGMASRILHYWRPPATDADDAAPKGKGKKAKTEHKPPAVSLGQIVTLGANDDTPFIGDVPPGEMVTSLNSKLFKIPIFEH 525
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: A0A2K1JX46_PHYPA (Bromo domain-containing protein n=10 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JX46_PHYPA) HSP 1 Score: 71.6 bits (174), Expect = 7.370e-9 Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 1 Query: 2485 VVEYVEERPPLLGSTGMASSIITFVRNSSRRPKMGGPAEADTNEGAAGFGQRRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 2748 ++EY EERP LLG+ GM + T+ R +R A E G L P EDSPFLG+IRPG Q+S+ ++RAPIF H Sbjct: 813 LMEYCEERPLLLGNVGMGGRLFTYYR---KRSSTDATAATLRAERGPWVGITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPIFPH 897
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: A0A1V9ZZT6_9STRA (Microtubule-associated protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZT6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.040e-8 Identity = 69/307 (22.48%), Postives = 128/307 (41.69%), Query Frame = 1 Query: 1870 LNPQVDGGGWESQVLLHDSQKLRKPKLPMYQDDPDMLFG--ALHTPRPTLKILQTEAQQENSHILERTSRRQMATEKQKRLQSAAMKTGYTINTLGEGKASRAE---NNIRAVI--VRPPHHASPAEDKILIAPPKSWEDIRNLHRPRMGLSNLQPNQTSVIRLPRKPKSVQQGGVAGQGGGGLGARIGEAVSMPMHREKDLLPLDARSTFVVVEYVEERPPLLGSTGMASSIITFVR-------NSSRRPKMGGPAEADTNEGAAGFGQRRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 2748 LNP ++ W + + + + ++ + ++D ++ + R TL+I + + H ++ + EK R+ + NT EG+ + E N ++ V HH+ PA L P +R HRPR + N+ V+ + + V + + + + + + DL P A +++EY+E+RPP+L + GMAS I+ + R N G + + GQ L P +D+PF+G++ G S+ + LF+ PIF+H Sbjct: 282 LNPSLEDDTWLNSIAWDHCMDMPESEVILDENDTHLILTNPLVENVRATLRIPERKL---GVHEKKQEQLNKQKREKNDRINDVMGNLTFGENT-AEGRLASDELKRNKDTRIVKHVGHVHHSLPAIKLSLTKPELPKPKLREFHRPR---GKFKINERLVLVHAKDAEKVTKASKNTE------LDVNDPALSQIKKTSDLNPT-AGGKLILLEYIEQRPPMLSNPGMASRILHYWRPPESDTANDPSSKGKGKKKDRKLETPSVSLGQVVTLGPNDDTPFIGDVPAGKMVTSLNSRLFKIPIFEH 574
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: A0A7I4APP2_PHYPA (Ubiquitin-like domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4APP2_PHYPA) HSP 1 Score: 70.9 bits (172), Expect = 1.190e-8 Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 Query: 2485 VVEYVEERPPLLGSTGMASSIITFVRNSSRRPKMGGPAEADTNEGAAGFGQRRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 2748 ++EY EERP +LG+ GM S + T+ R +R A E G L P EDSPFLG+IRPG Q+S+ ++RAP+F H Sbjct: 809 LMEYCEERPLVLGNVGMGSRLYTYYR---KRTPTDATAATLRAERGPWVGITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPH 893
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Match: A0A2K1JG16_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG16_PHYPA) HSP 1 Score: 70.9 bits (172), Expect = 1.270e-8 Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 Query: 2485 VVEYVEERPPLLGSTGMASSIITFVRNSSRRPKMGGPAEADTNEGAAGFGQRRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 2748 ++EY EERP +LG+ GM S + T+ R +R A E G L P EDSPFLG+IRPG Q+S+ ++RAP+F H Sbjct: 809 LMEYCEERPLVLGNVGMGSRLYTYYR---KRTPTDATAATLRAERGPWVGITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPH 893 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1888.5543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1888.5543.1 >prot_L-elsbetiae_contig1888.5543.1 ID=prot_L-elsbetiae_contig1888.5543.1|Name=mRNA_L-elsbetiae_contig1888.5543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=917bp SAHEATSSTSGGGSSGVDGLLFWSPRWQPTGLEGENYFLGVVPKVDAVDFback to top mRNA from alignment at L-elsbetiae_contig1888:5173..21534+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1888.5543.1 ID=mRNA_L-elsbetiae_contig1888.5543.1|Name=mRNA_L-elsbetiae_contig1888.5543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=16362bp|location=Sequence derived from alignment at L-elsbetiae_contig1888:5173..21534+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1888:5173..21534+ >mRNA_L-elsbetiae_contig1888.5543.1 ID=mRNA_L-elsbetiae_contig1888.5543.1|Name=mRNA_L-elsbetiae_contig1888.5543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5502bp|location=Sequence derived from alignment at L-elsbetiae_contig1888:5173..21534+ (Laminarionema elsbetiae ELsaHSoW15)back to top |