Homology
BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Match:
D7FTV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV1_ECTSI)
HSP 1 Score: 97.1 bits (240), Expect = 1.930e-19
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1
Query: 301 VDEDTAQLQGLQQLPNHRRLQGTTQIDVMMLYSTET-FAPG-EEAQLLSTMVAGFSTINEATSNSDI-DLKFNLVRVDQLPYSQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFPGLCGLG 705
+E++ + QGL P+ R LQ TT IDV+++YS E +A G EAQLL+ +V G T+N+A +NS I L++ LV+V +LPYSQ Y +D +L PE L L +++V LRD YQ DLV LVG FPG CGLG
Sbjct: 141 TEEESLRSQGL---PSDRSLQATTVIDVLIVYSPEAAYARGIAEAQLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYSQMTYVPSDDI-DLKPE----LDALAANSNVTDLRDQYQGDLVQLVGYFPGTCGLG 270
BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Match:
A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)
HSP 1 Score: 97.1 bits (240), Expect = 3.680e-18
Identity = 64/127 (50.39%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 334 QQLPNHRRLQGTTQIDVMMLYSTET-FAPG-EEAQLLSTMVAGFSTINEATSNSDI-DLKFNLVRVDQLPYSQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFPGLCGLG 705
Q + + RRLQGTT IDV+++YS E +A G EAQLL+ +V G T+N+A +NS I L++ LV+V +LPYSQ AY +D +L PE L L +++V LR+ YQ DLV LVG FPG CGLG
Sbjct: 160 QGMSSDRRLQGTTVIDVLIVYSPEAAYARGIAEAQLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYSQMAYIPSDDI-DLKPE----LDALAANSNVTDLRNQYQGDLVQLVGYFPGTCGLG 281
BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Match:
D8LMP2_ECTSI (Peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP2_ECTSI)
HSP 1 Score: 90.9 bits (224), Expect = 4.800e-18
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 376 IDVMMLYSTETFAPG--EEAQLLSTMVAGFSTINEATSNSDI-DLKFNLVRVDQLPYSQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFPGLCGLG 705
IDV++ YS E + +AQLL+ +V G T+N+A +NS I DL++ LV V +LPYSQ Y+ ND +L PE L L D+DV LRD YQ DLV LVG FPG CGLG
Sbjct: 13 IDVLIFYSPEAASSEGISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPNDDI-DLGPE----LDALAADSDVDDLRDQYQGDLVQLVGYFPGTCGLG 120
BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Match:
A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)
HSP 1 Score: 94.7 bits (234), Expect = 2.310e-17
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 334 QQLPNHRRLQGTTQIDVMMLYSTETFAPG--EEAQLLSTMVAGFSTINEATSNSDI-DLKFNLVRVDQLPYSQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFPGLCGLG 705
Q +P+ R LQGTT IDV++ YS E + +AQLL+ +V G T+N+A +NS I DL++ LV V +LPYSQ Y DP + EL L ++ V LR+ YQ DLV LVG FPG CGLG
Sbjct: 338 QGIPSDRSLQGTTVIDVLIFYSPEAASSEGISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTY---DPIDSDDIDLEPELDALAANSAVNDLRNEYQGDLVQLVGYFPGTCGLG 461
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 1.93e-19 / Id = 47.83 Expect = 3.68e-18 / Id = 50.39 Expect = 4.80e-18 / Id = 50.44 Expect = 2.31e-17 / Id = 47.24 Sequence D7FTV1_ECTSI A0A6H5JRC1_9PHAE D8LMP2_ECTSI A0A6H5JF50_9PHAE
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 4
Model size 1123
Cds size 621
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815784.1409512-UTR-L-elsbetiae_contig18846:387..802 1622815784.1409512-UTR-L-elsbetiae_contig18846:387..802 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18846 388..802 -
1691683100.199733-UTR-L-elsbetiae_contig18846:387..802 1691683100.199733-UTR-L-elsbetiae_contig18846:387..802 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18846 388..802 -
1622815784.2016232-UTR-L-elsbetiae_contig18846:2800..2887 1622815784.2016232-UTR-L-elsbetiae_contig18846:2800..2887 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18846 2801..2887 -
1691683100.2555647-UTR-L-elsbetiae_contig18846:2800..2887 1691683100.2555647-UTR-L-elsbetiae_contig18846:2800..2887 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18846 2801..2887 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815784.1525373-CDS-L-elsbetiae_contig18846:802..982 1622815784.1525373-CDS-L-elsbetiae_contig18846:802..982 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18846 803..982 -
1691683100.2178893-CDS-L-elsbetiae_contig18846:802..982 1691683100.2178893-CDS-L-elsbetiae_contig18846:802..982 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18846 803..982 -
1622815784.1625261-CDS-L-elsbetiae_contig18846:1404..1557 1622815784.1625261-CDS-L-elsbetiae_contig18846:1404..1557 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18846 1405..1557 -
1691683100.226939-CDS-L-elsbetiae_contig18846:1404..1557 1691683100.226939-CDS-L-elsbetiae_contig18846:1404..1557 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18846 1405..1557 -
1622815784.179345-CDS-L-elsbetiae_contig18846:2173..2263 1622815784.179345-CDS-L-elsbetiae_contig18846:2173..2263 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18846 2174..2263 -
1691683100.2373762-CDS-L-elsbetiae_contig18846:2173..2263 1691683100.2373762-CDS-L-elsbetiae_contig18846:2173..2263 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18846 2174..2263 -
1622815784.190093-CDS-L-elsbetiae_contig18846:2602..2800 1622815784.190093-CDS-L-elsbetiae_contig18846:2602..2800 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18846 2603..2800 -
1691683100.2465193-CDS-L-elsbetiae_contig18846:2602..2800 1691683100.2465193-CDS-L-elsbetiae_contig18846:2602..2800 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18846 2603..2800 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18846.5532.1
>prot_L-elsbetiae_contig18846.5532.1 ID=prot_L-elsbetiae_contig18846.5532.1|Name=mRNA_L-elsbetiae_contig18846.5532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MYCATCRTKRGKNHPMSSKSCVPPSFLWPLHHPQLSVVFYPHQDVEVPEP DTPSESSPDRQDIHVPETPLTVDEDTAQLQGLQQLPNHRRLQGTTQIDVM MLYSTETFAPGEEAQLLSTMVAGFSTINEATSNSDIDLKFNLVRVDQLPY SQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFP GLCGLG* back to top mRNA from alignment at L-elsbetiae_contig18846:388..2887-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18846.5532.1 ID=mRNA_L-elsbetiae_contig18846.5532.1|Name=mRNA_L-elsbetiae_contig18846.5532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2500bp|location=Sequence derived from alignment at L-elsbetiae_contig18846:388..2887- (Laminarionema elsbetiae ELsaHSoW15)GACCTGTCTCTCCAGACCTAGGTCTCACTAATACAATACCTTTCTACAAA
AGCCACTGATTTACCAACAGAGACAACGCCCGACGAG ATGTACTGTGCCA
CGTGTAGGACCAAGCGTGGGAAAAACCACCCGATGTCCTCAAAATCCTGC
GTACCGCCTTCCTTTCTATGGCCCCTACATCACCCGCAGCTTTCGGTAGT
CTTCTACCCGCACCAGGACGTAGAGGTACCTGAACCGGACACCCCAAGCG
AAAGCTCGCCGGACCGTCAGGATATCCACGTACCG GTGAGTCGAGGCACC
TAGCCTGGTTCAGGGCGACCTACTCTACGCTTTCTTGCGGACGGCGACCA
CGTCGCAGCAGGAAGGAATGAGCCGCTTGTGCGCAGCCCCGATCCAGCAG
GTCGTGCTGGTGAAAGGCAGTCGAGGGCTGGCAGCGTTCAGTTGGGAAGC
ACCGATGTTGGTTGCGATTTTCTTCGTCCGCACCGTGCGTTCCTCTCGAG
TTCTGGATGCCAAGCGCTGCTTTTGGACGCCCCTCGGCTTGGCTTAGCTT
CGTGCTTCTTGGCCTGCATTGTATCCGTCCGTGTACTTATCCACCCCAAT
TTCGGCGCTTTCTCATGGTGCCAGGAAACGCCGCTCACTGTGGATGAGGA
CACTGCACAATTGCAAGGACTGCAGCAACTGCCGAACCACCGTAGGCTTC
AGGGCACCACCCAG GTACTACATACCTTAAGCCCGAAGCGTCTCACCACA
CCACTCACCCCTTATCGCGAAGAAGCCGTAACGTCGCCATTCCAGCGGAG
TGCTTCCTGCACGCTTCACTGTTTAGATCGGGTGTGTTCGAGTTTGTCGG
CCGAGACTCCAATATGGACCTCTCGAGAAGTCACGAGTGCGACGGGCACG
CCTCGACATTATTTGCACCATATGTTTTGTACCATCAACCACCCCTTCTC
GACAGATTTGGTGTCCGAGTCGTCGCGGGGCAGGCTCGCGCTGTCTGGAG
GACACTCGTGTCAAGTAGACGAGTGGCGCTGAATGCAGAGTGGATACATT
CTCGTATTTCGTTCTGCCAGTAGGCAGATTCGGAATCACATTTTTTTGTC
TGTTTTTAGTATTCCATACATCATAAGTTTTTTGCGGTGTACAAGTTCAC
CGGCTTCGAAGCCTGCACTCTGGTGTAGCCAGGAGGGCAAATAGGATGAA
TCACTGACATCCGTGCCGATACCGCAATGGTTGTCACTAGCGCCACCTCC
AACACGAACGCAAACCTCGTGCCTTTCGGGGCGTCCACGCTCCTCGAACT
CTCTGTCACCCCGTGCACTCGCCGTTGCAGATAGACGTCATGATGTTGTA
CTCCACCGAAACTTTTGCCCCCGGGGAGGAGGCGCAGTTGCTATCCACCA
TGGTCGCCGGTTTCTCGACAATAAACGAGGCCACCTCGAACTCAGATATT
GACCTCAAGTTTAATCTAGTCCGTGTAGACCAG GTAAGCGCTGGGCTGCA
CCCATGGGGCCCCCGTGGTATAACAGTGGCAGTGCTGCCGCTTCACGGAA
AAGCATGCTACTGCTTGTTTGTATTAGCTGATATTGCTAAAAGCTCGGGT
TGTACTTGGAGTGCGGCCGCAGCGACCTTGTTTGTGTATGGTATGCTGCA
GCGTGGAGGCGTACACGCTGCTGTGGAAAACATGGTATTTTACAACATCC
CGACGAAGCCAGAGAGGGGTGTAGGTCATGTTGCAGGCAAGTTCTTGATC
ACACTTTGATTGGAAGTGAAGGCTGCCCCGCCCAGTTCTGGGCTCTTGCA
AGCCTGGGTGTTCATTATTTCTAACTCCCTCCGAATGCAACATTGTGGTT
CGTTCCCATCGCTCGTGTTCTGATGTAACCCTTCGCTTTTCTTCGCTCTG
CGCAGCTACCCTACAGCCAAACCGCGTACAATGCCAACGACCCTTTTAGT
GAGTTGTTTCCCGAATGGTTCGCTGAACTTACTAAGTTGAGGACCGATGC
TGACGTGCGAGCGCTCCGCGACGCATACCAAGCGGATCTGGTGCTGCTAG
TCGGCAGCTTCCCGGGCCTTTGTGGGCTAGGGTAA GGGCAAGCGGCACGA
TCGGGTTTAGGCTGTATACATGGAGAAGAGTACGGAATAGACCCAGGCGC
ACATCGATATCAGTCGTATGTAGTAATCGAAGTCTAACTCAACCGACAAC
CCTGTGAGTTATACTCTAACTACACAACAGTTTTTTCGTTGGTGCCGTTA
GATTTGGGGGGGGTACTGCGGTGGTGTGTCGTATGTCGGCATGCACTGAC
GGTGTGTGCGGAATCAGTGGAAGTTGTCAGGTGTTACGTACTGCTGTAAG
GGGCTCAAAATTGCGTGCAGCGCCCAGATTCAAAGCATGCCTTTACGCGC
GTATGTTCTGGCTAGACCGTAGTGATGAATGATCATCAGAAAACAAGCTG
CTCAACGCAGATGAATGCCCCGACCCCCCGAACTGGTCCATCCCGAAAAC
back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18846:388..2887-
>mRNA_L-elsbetiae_contig18846.5532.1 ID=mRNA_L-elsbetiae_contig18846.5532.1|Name=mRNA_L-elsbetiae_contig18846.5532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig18846:388..2887- (Laminarionema elsbetiae ELsaHSoW15) ATGTACTGTGCCACGTGTAGGACCAAGCGTGGGAAAAACCACCCGATGTC CTCAAAATCCTGCGTACCGCCTTCCTTTCTATGGCCCCTACATCACCCGC AGCTTTCGGTAGTCTTCTACCCGCACCAGGACGTAGAGGTACCTGAACCG GACACCCCAAGCGAAAGCTCGCCGGACCGTCAGGATATCCACGTACCGAT GTACTGTGCCACGTGTAGGACCAAGCGTGGGAAAAACCACCCGATGTCCT CAAAATCCTGCGTACCGCCTTCCTTTCTATGGCCCCTACATCACCCGCAG CTTTCGGTAGTCTTCTACCCGCACCAGGACGTAGAGGTACCTGAACCGGA CACCCCAAGCGAAAGCTCGCCGGACCGTCAGGATATCCACGTACCGGAAA CGCCGCTCACTGTGGATGAGGACACTGCACAATTGCAAGGACTGCAGCAA CTGCCGAACCACCGTAGGCTTCAGGGCACCACCCAGGAAACGCCGCTCAC TGTGGATGAGGACACTGCACAATTGCAAGGACTGCAGCAACTGCCGAACC ACCGTAGGCTTCAGGGCACCACCCAGATAGACGTCATGATGTTGTACTCC ACCGAAACTTTTGCCCCCGGGGAGGAGGCGCAGTTGCTATCCACCATGGT CGCCGGTTTCTCGACAATAAACGAGGCCACCTCGAACTCAGATATTGACC TCAAGTTTAATCTAGTCCGTGTAGACCAGATAGACGTCATGATGTTGTAC TCCACCGAAACTTTTGCCCCCGGGGAGGAGGCGCAGTTGCTATCCACCAT GGTCGCCGGTTTCTCGACAATAAACGAGGCCACCTCGAACTCAGATATTG ACCTCAAGTTTAATCTAGTCCGTGTAGACCAGCTACCCTACAGCCAAACC GCGTACAATGCCAACGACCCTTTTAGTGAGTTGTTTCCCGAATGGTTCGC TGAACTTACTAAGTTGAGGACCGATGCTGACGTGCGAGCGCTCCGCGACG CATACCAAGCGGATCTGGTGCTGCTAGTCGGCAGCTTCCCGGGCCTTTGT GGGCTAGGGTAACTACCCTACAGCCAAACCGCGTACAATGCCAACGACCC TTTTAGTGAGTTGTTTCCCGAATGGTTCGCTGAACTTACTAAGTTGAGGA CCGATGCTGACGTGCGAGCGCTCCGCGACGCATACCAAGCGGATCTGGTG CTGCTAGTCGGCAGCTTCCCGGGCCTTTGTGGGCTAGGGTAA back to top