mRNA_L-elsbetiae_contig1884.5530.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1884.5530.1
Unique NamemRNA_L-elsbetiae_contig1884.5530.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1884.5530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1884contigL-elsbetiae_contig1884:13925..14646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_001500.1
Exons2
Model size250
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.9959342-CDS-L-elsbetiae_contig1884:13926..139891622815783.9959342-CDS-L-elsbetiae_contig1884:13926..13989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1884 13927..13989 -
1691683100.1402352-CDS-L-elsbetiae_contig1884:13926..139891691683100.1402352-CDS-L-elsbetiae_contig1884:13926..13989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1884 13927..13989 -
1622815784.014281-CDS-L-elsbetiae_contig1884:14463..146461622815784.014281-CDS-L-elsbetiae_contig1884:14463..14646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1884 14464..14646 -
1691683100.1496387-CDS-L-elsbetiae_contig1884:14463..146461691683100.1496387-CDS-L-elsbetiae_contig1884:14463..14646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1884 14464..14646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1884.5530.1prot_L-elsbetiae_contig1884.5530.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1884 13927..14646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1884.5530.1

>prot_L-elsbetiae_contig1884.5530.1 ID=prot_L-elsbetiae_contig1884.5530.1|Name=mRNA_L-elsbetiae_contig1884.5530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
PQSAVSGSIIKPSRGEDIISGRAQDSAESRSYGNLAIREASKRAEKIRAS
TTSRPSNNVEKSSPERQKSVAVAERVDFRLPS
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mRNA from alignment at L-elsbetiae_contig1884:13925..14646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1884.5530.1 ID=mRNA_L-elsbetiae_contig1884.5530.1|Name=mRNA_L-elsbetiae_contig1884.5530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=722bp|location=Sequence derived from alignment at L-elsbetiae_contig1884:13925..14646- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAGTCAGCAGTCAGCGGTAGCATCATCAAGCCCAGCAGAGGGGAAGA
CATAATCTCTGGCAGGGCGCAGGATTCGGCGGAGAGCCGAAGTTATGGCA
ATCTCGCTATCCGAGAGGCCAGCAAGAGGGCGGAGAAAATTCGGGCGAGC
ACAACAAGTCGCCCCTCCAACAACGTCGAGAAAGTGAGATTCAAGCTTGC
AGAAAGAGGAGGCCGGCCGAACAGGGGTACATAGTTGGACAACATTCACG
GTGTGCTTTGTTTTCCTTGAGGTTTGCTGGGTTCAGACTACGTACATATG
TATGTGGAAATTATCTTGTTTACGGAAATACAGCGTGTGGGGGACTGTCA
GAATGTTGTTCATCACCACGCCCCTCGCACAAAAGGGCTCGACAATAGGC
GCGCACGGGTTGATACGCGAGCACGCTGTCTCTCCCCGTCGTAAAATTGA
CGATTTTGTAGCACTACTGCTGTTTCCGCACCTATCCACTAACACACCAC
GGGGCAACCAATCCGTAAGCGTGGGCCGTCTCGTTTGTTCCTCCTCACCG
GATCGATGGAGGAGGCGTTTTTCCTTTTTTGTGTGTAAATAGTCTACATA
TACGTCATGTGGGCTTATGCTTCCCCTATGTATGTACATACCCCAATCTC
TCGGCAGTCTTCGCCGGAGCGACAAAAATCGGTCGCTGTGGCAGAGCGCG
TCGACTTCAGGCTTCCCTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1884:13925..14646-

>mRNA_L-elsbetiae_contig1884.5530.1 ID=mRNA_L-elsbetiae_contig1884.5530.1|Name=mRNA_L-elsbetiae_contig1884.5530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig1884:13925..14646- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAGTCAGCAGTCAGCGGTAGCATCATCAAGCCCAGCAGAGGGGAAGA
CATAATCTCTGGCAGGGCGCAGGATTCGGCGGAGAGCCGAAGTTATGGCA
ATCTCGCTATCCGAGAGGCCAGCAAGAGGGCGGAGAAAATTCGGGCGAGC
ACAACAAGTCGCCCCTCCAACAACGTCGAGAAACCGCAGTCAGCAGTCAG
CGGTAGCATCATCAAGCCCAGCAGAGGGGAAGACATAATCTCTGGCAGGG
CGCAGGATTCGGCGGAGAGCCGAAGTTATGGCAATCTCGCTATCCGAGAG
GCCAGCAAGAGGGCGGAGAAAATTCGGGCGAGCACAACAAGTCGCCCCTC
CAACAACGTCGAGAAATCTTCGCCGGAGCGACAAAAATCGGTCGCTGTGG
CAGAGCGCGTCGACTTCAGGCTTCCCTCATCTTCGCCGGAGCGACAAAAA
TCGGTCGCTGTGGCAGAGCGCGTCGACTTCAGGCTTCCCTCA
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