mRNA_L-elsbetiae_contig18835.5527.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18835.5527.1
Unique NamemRNA_L-elsbetiae_contig18835.5527.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18835.5527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18835contigL-elsbetiae_contig18835:3..145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size143
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.9242473-CDS-L-elsbetiae_contig18835:2..1431622815783.9242473-CDS-L-elsbetiae_contig18835:2..143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18835 3..143 +
1691683100.104634-CDS-L-elsbetiae_contig18835:2..1431691683100.104634-CDS-L-elsbetiae_contig18835:2..143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18835 3..143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18835.5527.1prot_L-elsbetiae_contig18835.5527.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18835 3..143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18835.5527.1

>prot_L-elsbetiae_contig18835.5527.1 ID=prot_L-elsbetiae_contig18835.5527.1|Name=mRNA_L-elsbetiae_contig18835.5527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp
TSPEKNYAVEIPPKEYSPGITALQGLAQCKSLLPLGSPVILTTGKPP
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mRNA from alignment at L-elsbetiae_contig18835:3..145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18835.5527.1 ID=mRNA_L-elsbetiae_contig18835.5527.1|Name=mRNA_L-elsbetiae_contig18835.5527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=143bp|location=Sequence derived from alignment at L-elsbetiae_contig18835:3..145+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCCCCGGAAAAAAATTATGCGGTAGAGATACCCCCGAAGGAATATTC
TCCAGGGATTACAGCACTCCAGGGTCTAGCCCAGTGCAAGAGCCTGCTCC
CCCTGGGGTCACCAGTCATCCTGACCACTGGCAAGCCCCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18835:3..145+

>mRNA_L-elsbetiae_contig18835.5527.1 ID=mRNA_L-elsbetiae_contig18835.5527.1|Name=mRNA_L-elsbetiae_contig18835.5527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig18835:3..145+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCCCCGGAAAAAAATTATGCGGTAGAGATACCCCCGAAGGAATATTC
TCCAGGGATTACAGCACTCCAGGGTCTAGCCCAGTGCAAGAGCCTGCTCC
CCCTGGGGTCACCAGTCATCCTGACCACTGGCAAGCCCCCGACCTCCCCG
GAAAAAAATTATGCGGTAGAGATACCCCCGAAGGAATATTCTCCAGGGAT
TACAGCACTCCAGGGTCTAGCCCAGTGCAAGAGCCTGCTCCCCCTGGGGT
CACCAGTCATCCTGACCACTGGCAAGCCCCCG
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