mRNA_L-elsbetiae_contig1883.5520.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1883.5520.1
Unique NamemRNA_L-elsbetiae_contig1883.5520.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1883.5520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1883contigL-elsbetiae_contig1883:381..1272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.5410755-CDS-L-elsbetiae_contig1883:380..4621622815783.5410755-CDS-L-elsbetiae_contig1883:380..462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 381..462 +
1691683099.872337-CDS-L-elsbetiae_contig1883:380..4621691683099.872337-CDS-L-elsbetiae_contig1883:380..462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 381..462 +
1622815783.55121-CDS-L-elsbetiae_contig1883:1191..12711622815783.55121-CDS-L-elsbetiae_contig1883:1191..1271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 1192..1271 +
1691683099.8855824-CDS-L-elsbetiae_contig1883:1191..12711691683099.8855824-CDS-L-elsbetiae_contig1883:1191..1271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 1192..1271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1883.5520.1prot_L-elsbetiae_contig1883.5520.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1883 381..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1883.5520.1

>prot_L-elsbetiae_contig1883.5520.1 ID=prot_L-elsbetiae_contig1883.5520.1|Name=mRNA_L-elsbetiae_contig1883.5520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
SAAFCVLPPTSSLCFRPFSGTHPRRREEVRQRDLSLFRRGEIARLGPLLI
GRDP
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mRNA from alignment at L-elsbetiae_contig1883:381..1272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1883.5520.1 ID=mRNA_L-elsbetiae_contig1883.5520.1|Name=mRNA_L-elsbetiae_contig1883.5520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=892bp|location=Sequence derived from alignment at L-elsbetiae_contig1883:381..1272+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCCGCGTTTTGTGTGCTGCCGCCTACATCCTCTCTCTGCTTCCGCCC
ATTTAGCGGCACACATCCACGGCGAAGGGAAGGTACGCGACGGGGCGTGA
AGCGGTGGCAGCTGTGAATAGACCCTCTCTGTGTGGTACACTGGTGCGTG
CGTGCGCTTGTGTATGTGTTTGGCCTAATCGCTTACAGAGATCCTGGGGG
ATAAACATAGCGGAGATGAAAGGCACAGAAAAAGCATGAGGGGGGTGCGG
ATCACGTTGGGTCTCTTGTCCCGCTCCTTTTTGCTGCCGCTACTGCTCGA
TGCTGCTGATTTGTGTCACTGGAGGTCTTAGATTCAGGATTAAGTAGGTA
AAACGCAGACAGGTGCGTTGGGGGTGTGCCGTTGCCCTGTAGATACCCAT
GTCGAATCTCTGTGCAAAGGGCAAGGGCAAAGGGAACCCTAAACTAATCT
CGAGAACCCTTCACGTGAAAAGGCACGCTGATGCGGACCTCTCCGTACCT
GTCTCGTATATCACAGCAATCCCGTGTAGGTAGACATCCGAAACACATTT
TTTCGAACTGCTGTGGCCCTGTCTTGTTTTTGTGTTGTGCGCGTAATATT
CATGGAGAATTTAGGAGTCGCGAGCAACAAAAAAGATGTACATTCAGCCT
TGACATACTCTGAAAATCTGGTCCAAGTCATCGGCTACGTGTGGTTGGGT
CATGTTGTAGCCGCGGCTTGCCAATTCCGCTTTTATCCCACTGAGATTCA
ACTCTCTCCCTCTCTGGTAACTCTCCCATTCTGACGCCCTTTTCGCGCTC
TCCTTCGCAAGAAGTACGCCAGCGCGACCTGTCCCTTTTTCGGCGCGGCG
AGATCGCGCGCTTGGGTCCGCTGCTGATTGGCAGAGATCCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1883:381..1272+

>mRNA_L-elsbetiae_contig1883.5520.1 ID=mRNA_L-elsbetiae_contig1883.5520.1|Name=mRNA_L-elsbetiae_contig1883.5520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig1883:381..1272+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCCGCGTTTTGTGTGCTGCCGCCTACATCCTCTCTCTGCTTCCGCCC
ATTTAGCGGCACACATCCACGGCGAAGGGAAGTCCGCCGCGTTTTGTGTG
CTGCCGCCTACATCCTCTCTCTGCTTCCGCCCATTTAGCGGCACACATCC
ACGGCGAAGGGAAGAAGTACGCCAGCGCGACCTGTCCCTTTTTCGGCGCG
GCGAGATCGCGCGCTTGGGTCCGCTGCTGATTGGCAGAGATCCGAAGTAC
GCCAGCGCGACCTGTCCCTTTTTCGGCGCGGCGAGATCGCGCGCTTGGGT
CCGCTGCTGATTGGCAGAGATCCG
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