mRNA_L-elsbetiae_contig18814.5513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18814.5513.1
Unique NamemRNA_L-elsbetiae_contig18814.5513.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18814.5513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18814contigL-elsbetiae_contig18814:1767..2346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size580
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18814.5513.1prot_L-elsbetiae_contig18814.5513.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18814 1860..2276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.0840795-UTR-L-elsbetiae_contig18814:1766..18591622815783.0840795-UTR-L-elsbetiae_contig18814:1766..1859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18814 1767..1859 +
1691683099.5927896-UTR-L-elsbetiae_contig18814:1766..18591691683099.5927896-UTR-L-elsbetiae_contig18814:1766..1859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18814 1767..1859 +
1622815783.1083097-UTR-L-elsbetiae_contig18814:2276..23461622815783.1083097-UTR-L-elsbetiae_contig18814:2276..2346Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18814 2277..2346 +
1691683099.613478-UTR-L-elsbetiae_contig18814:2276..23461691683099.613478-UTR-L-elsbetiae_contig18814:2276..2346Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18814 2277..2346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.0959089-CDS-L-elsbetiae_contig18814:1859..22761622815783.0959089-CDS-L-elsbetiae_contig18814:1859..2276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18814 1860..2276 +
1691683099.6038127-CDS-L-elsbetiae_contig18814:1859..22761691683099.6038127-CDS-L-elsbetiae_contig18814:1859..2276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18814 1860..2276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18814.5513.1

>prot_L-elsbetiae_contig18814.5513.1 ID=prot_L-elsbetiae_contig18814.5513.1|Name=mRNA_L-elsbetiae_contig18814.5513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MMQGATCSPGGQEEERPCFQLLLFLARLVAGTGKATKDVGLRKKRLLLRG
PCFSSHKDGCLHTLEHTAEESQSSGHFIPSDRKCAPLVRARTMVPCGAAM
PSMFAGLVAPPKACCACSLDKRQKRVRSDAHLRLDLRE*
back to top

mRNA from alignment at L-elsbetiae_contig18814:1767..2346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18814.5513.1 ID=mRNA_L-elsbetiae_contig18814.5513.1|Name=mRNA_L-elsbetiae_contig18814.5513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=580bp|location=Sequence derived from alignment at L-elsbetiae_contig18814:1767..2346+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGCCGGTCGCTCTGAGACTTCTTTAAGTTGGTGCGCAAAATGTCGGAA
ACCGGGGTATGACATTGTTTTGGAAAAGCTGGCTACAAGGCCGATGATGC
AGGGGGCAACATGCTCGCCTGGTGGACAAGAGGAGGAGCGGCCTTGTTTT
CAACTCTTGCTCTTTCTGGCAAGGCTTGTTGCTGGGACGGGGAAGGCGAC
GAAGGACGTCGGCTTGCGAAAAAAACGGCTTCTTTTGAGGGGACCTTGCT
TTTCTTCTCACAAGGATGGTTGTCTACATACCCTCGAACATACCGCAGAA
GAGAGTCAGTCTTCAGGACATTTTATTCCAAGTGACCGGAAGTGTGCCCC
CCTCGTTAGGGCGCGAACAATGGTGCCGTGTGGTGCAGCCATGCCATCCA
TGTTCGCGGGGCTCGTTGCGCCTCCCAAAGCGTGTTGTGCTTGCTCTCTT
GACAAGAGACAGAAGAGAGTAAGAAGCGACGCCCATCTGAGACTGGACTT
AAGGGAATAAAGTCTTGAATTTCTACAGCCGGGGTTTGGAGATGATCGCC
CCGCGCGATAGCCGAAAAAGGAAAAACCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18814:1767..2346+

>mRNA_L-elsbetiae_contig18814.5513.1 ID=mRNA_L-elsbetiae_contig18814.5513.1|Name=mRNA_L-elsbetiae_contig18814.5513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig18814:1767..2346+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCAGGGGGCAACATGCTCGCCTGGTGGACAAGAGGAGGAGCGGCC
TTGTTTTCAACTCTTGCTCTTTCTGGCAAGGCTTGTTGCTGGGACGGGGA
AGGCGACGAAGGACGTCGGCTTGCGAAAAAAACGGCTTCTTTTGAGGGGA
CCTTGCTTTTCTTCTCACAAGGATGGTTGTCTACATACCCTCGAACATAC
CGCAGAAGAGAGTCAGTCTTCAGGACATTTTATTCCAAGTGACCGGAAGT
GTGCCCCCCTCGTTAGGGCGCGAACAATGGTGCCGTGTGGTGCAGCCATG
CCATCCATGTTCGCGGGGCTCGTTGCGCCTCCCAAAGCGTGTTGTGCTTG
CTCTCTTGACAAGAGACAGAAGAGAGTAAGAAGCGACGCCCATCTGAGAC
TGGACTTAAGGGAATAAATGATGCAGGGGGCAACATGCTCGCCTGGTGGA
CAAGAGGAGGAGCGGCCTTGTTTTCAACTCTTGCTCTTTCTGGCAAGGCT
TGTTGCTGGGACGGGGAAGGCGACGAAGGACGTCGGCTTGCGAAAAAAAC
GGCTTCTTTTGAGGGGACCTTGCTTTTCTTCTCACAAGGATGGTTGTCTA
CATACCCTCGAACATACCGCAGAAGAGAGTCAGTCTTCAGGACATTTTAT
TCCAAGTGACCGGAAGTGTGCCCCCCTCGTTAGGGCGCGAACAATGGTGC
CGTGTGGTGCAGCCATGCCATCCATGTTCGCGGGGCTCGTTGCGCCTCCC
AAAGCGTGTTGTGCTTGCTCTCTTGACAAGAGACAGAAGAGAGTAAGAAG
CGACGCCCATCTGAGACTGGACTTAAGGGAATAA
back to top