mRNA_L-elsbetiae_contig18784.5500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig18784.5500.1
Unique Name	mRNA_L-elsbetiae_contig18784.5500.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5KZG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.480e-28
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEK---RKGKGARGSQQAY 336
            +Y PES++   D+++ L S KIP   NP HAL  M   A  L  + + VNE F+LHLF+ ALS+EYAMTKH LRH   L R DV+  VT+E++SIMEK    KGKGARG++QAY
Sbjct:  250 LYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRHKERLTRSDVLKEVTIEYRSIMEKVKAGKGKGARGAEQAY 363

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5L6M8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.450e-28
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEK---RKGKGARGSQQAY 336
            +Y PES++   D+++ L S KIP   NP HAL  M   A  L  + + VNE F+LHLF+ ALS+EYAMTKH LRH   L R DV+  VT+E++SIMEK    KGKGARG++QAY
Sbjct:   78 LYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRHKERLTRSDVLKEVTIEYRSIMEKVKAGKGKGARGAEQAY 191

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5KUJ9_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.400e-28
Identity = 60/114 (52.63%), Postives = 77/114 (67.54%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEK---RKGKGARGSQQAY 336
            +Y PES++   D+++ L S KIP   NP HAL  M   A  L  + + VNE F+LHLF+ A S+EYAMTKH LRH   L R DV+  VT+E++SIMEK    KGKGARG++QAY
Sbjct:   17 LYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDAFSNEYAMTKHALRHKERLTRSDVLKEVTIEYRSIMEKVKAGKGKGARGAEQAY 130

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5J739_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J739_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.130e-27
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEK---RKGKGARGSQQAY 336
            +Y PES++   D+++ L S KIP   NP HAL  M   A  L  + + VNE F+LHLF+ ALS+EYAMTKH LRH   L R DV+  VT+E++SIMEK    KGKGARG++QAY
Sbjct:  250 LYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRHKERLTRSDVLKEVTIEYRSIMEKVKAGKGKGARGAEQAY 363

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5K8M7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.700e-27
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEK---RKGKGARGSQQAY 336
            +Y PES++   D+++ L S KIP   NP HAL  M   A  L  + + VNE F+LHLF+ ALS+EYAMTKH LRH   L R DV+  VT+E++SIMEK    KGKGARG++QAY
Sbjct:  250 LYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRHKERLTRSDVLKEVTIEYRSIMEKVKAGKGKGARGAEQAY 363

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5L6T6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T6_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.710e-27
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEK---RKGKGARGSQQAY 336
            +Y PES++   D+++ L S KIP   NP HAL  M   A  L  + + VNE F+LHLF+ ALS+EYAMTKH LRH   L R DV+  VT+E++SIMEK    KGKGARG++QAY
Sbjct:  484 LYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRHKERLTRSDVLKEVTIEYRSIMEKVKAGKGKGARGAEQAY 597

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.760e-27
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEK---RKGKGARGSQQAY 336
            +Y PES++   D+++ L S KIP   NP HAL  M   A  L  + + VNE F+LHLF+ ALS+EYAMTKH LRH   L R DV+  VT+E++SIMEK    KGKGARG++QAY
Sbjct:  249 LYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRHKERLTRSDVLKEVTIEYRSIMEKVKAGKGKGARGAEQAY 362

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5KEZ2_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.280e-27
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSI---MEKRKGKGARGSQQAY 336
            I+ PES+V   +D++ L STKI    NP +AL EM   A  L +K + VNE F+LHLF+ ALSDEYAMTKHNLRH   L R  V+  V +E+K+I   +E+ KGKGA+G++QAY
Sbjct:   17 IHDPESSVHPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKGLTVNETFVLHLFLDALSDEYAMTKHNLRHAKELTRTGVLKEVMIEYKAIKDKLEQGKGKGAKGAEQAY 130

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5KSE5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.040e-27
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEKR---KGKGARGSQQAY 336
            I+ PES+V   +D++ L STKI    NP +AL EM   A  L +K + VNE F+LHLF+ ALSDEYAMTKHNLRH   L R  V+  V +E+K+I +K    KGKGA+GS+QAY
Sbjct:   78 IHDPESSVQPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKGLTVNETFVLHLFLDALSDEYAMTKHNLRHAKKLTRTGVLKEVIIEYKAIKDKPEQGKGKGAKGSEQAY 191

[Close]

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.560e-26
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1

Query:    4 IYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAVNEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEKRKG--KGARGSQQAY 336
            +Y P +T+   DDM+KL+  +IP + +P+H LR+M   A RL+ K I  NE F+L+ FV AL +E+AMTKHNLRH   L ++DV+  VT+E+ +I EKRK   +GARG +QAY
Sbjct:  285 MYDPITTMQNADDMQKLLVKRIPDDRHPVHTLRDMLTTAERLNTKGIVANETFVLNHFVGALPNEFAMTKHNLRHQKVLTKEDVIREVTIEYNAITEKRKAAKRGARGPEQAY 397

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig18784.5500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZG8_9PHAE	2.480e-28	53.51	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6M8_9PHAE	5.450e-28	53.51	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KUJ9_9PHAE	7.400e-28	52.63	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5J739_9PHAE	1.130e-27	53.51	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5K8M7_9PHAE	1.700e-27	53.51	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5L6T6_9PHAE	1.710e-27	53.51	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JRY9_9PHAE	1.760e-27	53.51	CCHC-type domain-containing protein n=4 Tax=Ectoca...	[more]
A0A6H5KEZ2_9PHAE	4.280e-27	52.63	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KSE5_9PHAE	9.040e-27	53.51	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L175_9PHAE	1.560e-26	49.56	Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig18784	contig	L-elsbetiae_contig18784:2502..2838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	338
Cds size	336
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815781.6084735-CDS-L-elsbetiae_contig18784:2501..2837	1622815781.6084735-CDS-L-elsbetiae_contig18784:2501..2837	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig18784 2502..2837 +
1691683098.5716643-CDS-L-elsbetiae_contig18784:2501..2837	1691683098.5716643-CDS-L-elsbetiae_contig18784:2501..2837	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig18784 2502..2837 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig18784.5500.1	prot_L-elsbetiae_contig18784.5500.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig18784 2502..2837 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig18784:2502..2838+
coding sequence from alignment at L-elsbetiae_contig18784:2502..2838+

protein sequence of mRNA_L-elsbetiae_contig18784.5500.1

>prot_L-elsbetiae_contig18784.5500.1 ID=prot_L-elsbetiae_contig18784.5500.1|Name=mRNA_L-elsbetiae_contig18784.5500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
AIYAPESTVSTQDDMEKLMSTKIPTETNPLHALREMEVIAGRLDDKQIAV
NEAFLLHLFVAALSDEYAMTKHNLRHTAALKRDDVVHNVTVEFKSIMEKR
KGKGARGSQQAY

mRNA from alignment at L-elsbetiae_contig18784:2502..2838+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig18784.5500.1 ID=mRNA_L-elsbetiae_contig18784.5500.1|Name=mRNA_L-elsbetiae_contig18784.5500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=337bp|location=Sequence derived from alignment at L-elsbetiae_contig18784:2502..2838+ (Laminarionema elsbetiae ELsaHSoW15)
GCAATCTACGCTCCAGAATCAACAGTGTCTACGCAAGATGATATGGAGAA
ACTGATGTCGACCAAAATCCCCACCGAGACGAATCCCCTGCATGCACTTC
GTGAAATGGAAGTAATTGCCGGTCGCTTGGATGATAAGCAAATCGCAGTC
AACGAAGCTTTCCTCTTGCACCTTTTCGTGGCCGCCCTTTCCGACGAGTA
TGCCATGACGAAGCACAACCTACGACACACGGCAGCTCTGAAGCGAGACG
ACGTCGTACACAACGTCACCGTCGAGTTCAAATCCATCATGGAGAAGCGG
AAAGGAAAAGGCGCGCGGGGCTCACAGCAAGCCTACG

Coding sequence (CDS) from alignment at L-elsbetiae_contig18784:2502..2838+

>mRNA_L-elsbetiae_contig18784.5500.1 ID=mRNA_L-elsbetiae_contig18784.5500.1|Name=mRNA_L-elsbetiae_contig18784.5500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig18784:2502..2838+ (Laminarionema elsbetiae ELsaHSoW15)
GCAATCTACGCTCCAGAATCAACAGTGTCTACGCAAGATGATATGGAGAA
ACTGATGTCGACCAAAATCCCCACCGAGACGAATCCCCTGCATGCACTTC
GTGAAATGGAAGTAATTGCCGGTCGCTTGGATGATAAGCAAATCGCAGTC
AACGAAGCTTTCCTCTTGCACCTTTTCGTGGCCGCCCTTTCCGACGAGTA
TGCCATGACGAAGCACAACCTACGACACACGGCAGCTCTGAAGCGAGACG
ACGTCGTACACAACGTCACCGTCGAGTTCAAATCCATCATGGAGAAGCGG
AAAGGAAAAGGCGCGCGGGGCTCACAGCAAGCCTACGCAATCTACGCTCC
AGAATCAACAGTGTCTACGCAAGATGATATGGAGAAACTGATGTCGACCA
AAATCCCCACCGAGACGAATCCCCTGCATGCACTTCGTGAAATGGAAGTA
ATTGCCGGTCGCTTGGATGATAAGCAAATCGCAGTCAACGAAGCTTTCCT
CTTGCACCTTTTCGTGGCCGCCCTTTCCGACGAGTATGCCATGACGAAGC
ACAACCTACGACACACGGCAGCTCTGAAGCGAGACGACGTCGTACACAAC
GTCACCGTCGAGTTCAAATCCATCATGGAGAAGCGGAAAGGAAAAGGCGC
GCGGGGCTCACAGCAAGCCTAC