mRNA_L-elsbetiae_contig18766.5495.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18766.5495.1
Unique NamemRNA_L-elsbetiae_contig18766.5495.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18766.5495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18766contigL-elsbetiae_contig18766:2534..2896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.0125484-UTR-L-elsbetiae_contig18766:2533..25451622815781.0125484-UTR-L-elsbetiae_contig18766:2533..2545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18766 2534..2545 +
1691683098.09934-UTR-L-elsbetiae_contig18766:2533..25451691683098.09934-UTR-L-elsbetiae_contig18766:2533..2545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18766 2534..2545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.024708-CDS-L-elsbetiae_contig18766:2545..28961622815781.024708-CDS-L-elsbetiae_contig18766:2545..2896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18766 2546..2896 +
1691683098.119787-CDS-L-elsbetiae_contig18766:2545..28961691683098.119787-CDS-L-elsbetiae_contig18766:2545..2896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18766 2546..2896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18766.5495.1prot_L-elsbetiae_contig18766.5495.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18766 2546..2896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18766.5495.1

>prot_L-elsbetiae_contig18766.5495.1 ID=prot_L-elsbetiae_contig18766.5495.1|Name=mRNA_L-elsbetiae_contig18766.5495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MGPEDDASRPLSSAGARRHQDEADAVAAREAREKTLRVQKQYSRLNVSNL
GRIPSLPLADADDNFSRFVTACEATTRDILEFGDVDQTFTSASWVPGWFP
WLRKRISSAVADPERNT
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mRNA from alignment at L-elsbetiae_contig18766:2534..2896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18766.5495.1 ID=mRNA_L-elsbetiae_contig18766.5495.1|Name=mRNA_L-elsbetiae_contig18766.5495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=363bp|location=Sequence derived from alignment at L-elsbetiae_contig18766:2534..2896+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGTCCCGGCGATGGGGCCAGAGGATGATGCCTCCCGGCCGCTTTCGTC
TGCTGGTGCCCGCCGGCATCAAGATGAAGCTGACGCCGTCGCGGCGCGAG
AGGCCCGTGAAAAGACGCTTCGAGTTCAGAAACAGTATTCACGGCTTAAC
GTCTCCAACCTTGGGCGTATCCCCTCGTTGCCGCTCGCTGACGCTGATGA
TAATTTTTCGCGCTTTGTCACCGCCTGTGAAGCGACTACCAGAGATATTC
TGGAATTTGGTGATGTTGACCAGACATTCACGTCCGCGTCGTGGGTGCCG
GGTTGGTTCCCTTGGCTCCGAAAGCGCATCTCTTCGGCTGTCGCGGACCC
TGAGCGAAACACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18766:2534..2896+

>mRNA_L-elsbetiae_contig18766.5495.1 ID=mRNA_L-elsbetiae_contig18766.5495.1|Name=mRNA_L-elsbetiae_contig18766.5495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig18766:2534..2896+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCCAGAGGATGATGCCTCCCGGCCGCTTTCGTCTGCTGGTGCCCG
CCGGCATCAAGATGAAGCTGACGCCGTCGCGGCGCGAGAGGCCCGTGAAA
AGACGCTTCGAGTTCAGAAACAGTATTCACGGCTTAACGTCTCCAACCTT
GGGCGTATCCCCTCGTTGCCGCTCGCTGACGCTGATGATAATTTTTCGCG
CTTTGTCACCGCCTGTGAAGCGACTACCAGAGATATTCTGGAATTTGGTG
ATGTTGACCAGACATTCACGTCCGCGTCGTGGGTGCCGGGTTGGTTCCCT
TGGCTCCGAAAGCGCATCTCTTCGGCTGTCGCGGACCCTGAGCGAAACAC
TATGGGGCCAGAGGATGATGCCTCCCGGCCGCTTTCGTCTGCTGGTGCCC
GCCGGCATCAAGATGAAGCTGACGCCGTCGCGGCGCGAGAGGCCCGTGAA
AAGACGCTTCGAGTTCAGAAACAGTATTCACGGCTTAACGTCTCCAACCT
TGGGCGTATCCCCTCGTTGCCGCTCGCTGACGCTGATGATAATTTTTCGC
GCTTTGTCACCGCCTGTGAAGCGACTACCAGAGATATTCTGGAATTTGGT
GATGTTGACCAGACATTCACGTCCGCGTCGTGGGTGCCGGGTTGGTTCCC
TTGGCTCCGAAAGCGCATCTCTTCGGCTGTCGCGGACCCTGAGCGAAACA
CT
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