mRNA_L-elsbetiae_contig18765.5494.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18765.5494.1
Unique NamemRNA_L-elsbetiae_contig18765.5494.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18765.5494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18765contigL-elsbetiae_contig18765:2293..2669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.9677484-CDS-L-elsbetiae_contig18765:2292..26131622815780.9677484-CDS-L-elsbetiae_contig18765:2292..2613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18765 2293..2613 +
1691683098.0772343-CDS-L-elsbetiae_contig18765:2292..26131691683098.0772343-CDS-L-elsbetiae_contig18765:2292..2613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18765 2293..2613 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.9777808-UTR-L-elsbetiae_contig18765:2613..26691622815780.9777808-UTR-L-elsbetiae_contig18765:2613..2669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18765 2614..2669 +
1691683098.0887275-UTR-L-elsbetiae_contig18765:2613..26691691683098.0887275-UTR-L-elsbetiae_contig18765:2613..2669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18765 2614..2669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18765.5494.1prot_L-elsbetiae_contig18765.5494.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18765 2293..2613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18765.5494.1

>prot_L-elsbetiae_contig18765.5494.1 ID=prot_L-elsbetiae_contig18765.5494.1|Name=mRNA_L-elsbetiae_contig18765.5494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
GGAKGHEAYSCGKAGNKSCGSASSKEKTCLDLWRVQQQADKKEVPKATKH
IHAAKRATDRVGRHQAKKKRASTSALVSIASTLLAGAGSDGETMTPEASA
REQCLH*
back to top

mRNA from alignment at L-elsbetiae_contig18765:2293..2669+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18765.5494.1 ID=mRNA_L-elsbetiae_contig18765.5494.1|Name=mRNA_L-elsbetiae_contig18765.5494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=377bp|location=Sequence derived from alignment at L-elsbetiae_contig18765:2293..2669+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGTGCCAAAGGCCACGAAGCATATTCATGCGGCAAAGCGGGCAACAA
ATCGTGTGGGTCGGCATCAAGCAAAGAAAAAACTTGCCTCGACTTATGGC
GTGTTCAACAACAGGCGGACAAGAAGGAGGTGCCAAAGGCCACGAAGCAT
ATTCATGCGGCAAAGCGGGCAACAGATCGTGTGGGTCGGCATCAAGCAAA
GAAAAAACGTGCCTCGACTTCGGCTTTGGTGAGCATAGCATCAACCCTTT
TGGCAGGAGCCGGGTCGGACGGTGAGACGATGACGCCAGAGGCGTCCGCC
CGAGAACAATGCTTACATTAGTGACGGGACGCCGAGCGGCTGTTATCAGA
GCTTTCCCCACGCCCGGCACCGGCAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18765:2293..2669+

>mRNA_L-elsbetiae_contig18765.5494.1 ID=mRNA_L-elsbetiae_contig18765.5494.1|Name=mRNA_L-elsbetiae_contig18765.5494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig18765:2293..2669+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGTGCCAAAGGCCACGAAGCATATTCATGCGGCAAAGCGGGCAACAA
ATCGTGTGGGTCGGCATCAAGCAAAGAAAAAACTTGCCTCGACTTATGGC
GTGTTCAACAACAGGCGGACAAGAAGGAGGTGCCAAAGGCCACGAAGCAT
ATTCATGCGGCAAAGCGGGCAACAGATCGTGTGGGTCGGCATCAAGCAAA
GAAAAAACGTGCCTCGACTTCGGCTTTGGTGAGCATAGCATCAACCCTTT
TGGCAGGAGCCGGGTCGGACGGTGAGACGATGACGCCAGAGGCGTCCGCC
CGAGAACAATGCTTACATTAGGGAGGTGCCAAAGGCCACGAAGCATATTC
ATGCGGCAAAGCGGGCAACAAATCGTGTGGGTCGGCATCAAGCAAAGAAA
AAACTTGCCTCGACTTATGGCGTGTTCAACAACAGGCGGACAAGAAGGAG
GTGCCAAAGGCCACGAAGCATATTCATGCGGCAAAGCGGGCAACAGATCG
TGTGGGTCGGCATCAAGCAAAGAAAAAACGTGCCTCGACTTCGGCTTTGG
TGAGCATAGCATCAACCCTTTTGGCAGGAGCCGGGTCGGACGGTGAGACG
ATGACGCCAGAGGCGTCCGCCCGAGAACAATGCTTACATTAG
back to top