mRNA_L-elsbetiae_contig18759.5492.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18759.5492.1
Unique NamemRNA_L-elsbetiae_contig18759.5492.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18759.5492.1 vs. uniprot
Match: A0A6H5KD39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD39_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 6.190e-39
Identity = 84/127 (66.14%), Postives = 107/127 (84.25%), Query Frame = 1 
Query:   94 RPSWGTWTKAQAYLQILKELTGTDDEELQWLAVAKQGQGVQKSEKRQESAETEYHRLLCEESMQQAGLKLIKDRRLEVALKAFGKLGNELERLTKLLEELEQKETTLITEDDEAEHQASAEVEAAAA 474
            RPS GTW   Q YL+ILKE++G D+EEL+WL VAK+GQGV+KSE R+E+AETEYHRLLCEESMQ+AGLKL++DRRLEVAL+  GK G EL+RLT+LLEEL  +E +L+ +  +AE Q SA++E+AAA
Sbjct:  727 RPSIGTWATTQNYLKILKEISGKDEEELEWLVVAKKGQGVEKSETRRENAETEYHRLLCEESMQEAGLKLLRDRRLEVALRNVGKQGEELDRLTELLEELGGQEMSLVAKGADAEQQESAQLESAAA 853
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BLAST of mRNA_L-elsbetiae_contig18759.5492.1 vs. uniprot
Match: D7FIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 7.860e-36
Identity = 75/100 (75.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:   94 RPSWGTWTKAQAYLQILKELTGTDDEELQWLAVAKQGQGVQKSEKRQESAETEYHRLLCEESMQQAGLKLIKDRRLEVALKAFGKLGNELERLTKLLEEL 393
            RPS GTW   Q YL+ILKE++G D+EEL+WL VAK+GQGV+KSE R+E+AETEYHRLLCEESMQ+AGLKL+KDRRLEVAL+  GKLG EL+RLT+LLEEL
Sbjct:  737 RPSIGTWATTQNYLKILKEISGKDEEELEWLVVAKKGQGVKKSETRRENAETEYHRLLCEESMQEAGLKLLKDRRLEVALRNVGKLGEELDRLTELLEEL 836
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BLAST of mRNA_L-elsbetiae_contig18759.5492.1 vs. uniprot
Match: D7FTS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS2_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 4.790e-31
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   94 RPSWGTWTKAQAYLQILKELTGTDDEELQWLAVAKQGQGVQKSEKRQESAETEYHRLLCEESMQQAGLKLIKDRRLEVALKAFGKLGNELERLTKLLEELEQKE---TTLITEDDE 432
            RPS GTW KA   L+ILK++TG DDEEL+WL  A++GQGV++SE+R+E+AETEYHRLL EESM +AG ++IKDRRLEV+LK   K+G EL+RLTK+ E+L ++E   TTLI +DD+
Sbjct:  233 RPSLGTWQKASMRLEILKKITGKDDEELEWLITAQEGQGVKRSERRRENAETEYHRLLFEESMLKAGREIIKDRRLEVSLKTVIKMGEELQRLTKIHEQLTEQEKSLTTLIGDDDD 348
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BLAST of mRNA_L-elsbetiae_contig18759.5492.1 vs. uniprot
Match: D7FMC3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC3_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.430e-29
Identity = 66/109 (60.55%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:   94 RPSWGTWTKAQAYLQILKELTGTDDEELQWLAVAKQGQGVQKSEKRQESAETEYHRLLCEESMQQAGLKLIKDRRLEVALKAFGKLGNELERLTKLLEELEQKETTLIT 420
            RPS GTW K    L+ILK++TG  DEEL+WL  AKQG G+QKSE R++ AET+YHRLL +ESM QAG++++KDRRLEV+LK   K+G +LERLTKL E+L ++E +L T
Sbjct:  295 RPSLGTWEKTIVRLEILKKITGKGDEELEWLCSAKQGDGIQKSETRRDCAETDYHRLLFQESMLQAGMEILKDRRLEVSLKTLAKMGGDLERLTKLHEQLAEEEASLTT 403
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BLAST of mRNA_L-elsbetiae_contig18759.5492.1 vs. uniprot
Match: A0A6H5L4G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.580e-29
Identity = 64/109 (58.72%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:   94 RPSWGTWTKAQAYLQILKELTGTDDEELQWLAVAKQGQGVQKSEKRQESAETEYHRLLCEESMQQAGLKLIKDRRLEVALKAFGKLGNELERLTKLLEELEQKETTLIT 420
            RPS GTW K    L+ILK++TG  DEEL+WL  AK+G G+QKSE R++ AET+YHR+L +ESM QAG++++KDRRLEV+LK   K+G +LERLTKL E+L ++E +L T
Sbjct:  274 RPSLGTWEKTIVRLEILKKITGKGDEELEWLCSAKKGDGIQKSETRRDCAETDYHRVLFQESMLQAGMEILKDRRLEVSLKTLAKMGGDLERLTKLHEQLAEEEASLTT 382
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BLAST of mRNA_L-elsbetiae_contig18759.5492.1 vs. uniprot
Match: D7FT01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT01_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 6.640e-25
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:   97 PSWGTWTKAQAYLQILKELTGTDDEELQWLAVAKQGQGVQKSEKRQESAETEYHRLLCEESMQQAGLKLIKDRRLEVALKAFGKLGNELERLT 375
            PS GTW K    L+ILK++TG DDEEL+WL  A QG  VQ SE+R+E+AETEYHRLL +ESM QAG++++KDRRL V+LKA  K+G + ERLT
Sbjct:  223 PSLGTWEKTVLQLEILKKITGKDDEELEWLITATQGNAVQMSERRRETAETEYHRLLFQESMVQAGMEILKDRRLSVSLKAVAKMGGDFERLT 315
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18759.5492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KD39_9PHAE6.190e-3966.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN4_ECTSI7.860e-3675.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTS2_ECTSI4.790e-3162.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMC3_ECTSI1.430e-2960.55Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5L4G1_9PHAE6.580e-2958.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT01_ECTSI6.640e-2562.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18759contigL-elsbetiae_contig18759:626..2633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue3.8e-32
Seed eggNOG ortholog2880.D7FIN4
Hectar predicted targeting categoryother localisation
EggNOG OGs2C7IG@1,2QWI0@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000410.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size696
Cds size693
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18759.5492.1prot_L-elsbetiae_contig18759.5492.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18759 627..2633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.8377347-CDS-L-elsbetiae_contig18759:626..9171622815780.8377347-CDS-L-elsbetiae_contig18759:626..917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18759 627..917 -
1691683098.0003126-CDS-L-elsbetiae_contig18759:626..9171691683098.0003126-CDS-L-elsbetiae_contig18759:626..917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18759 627..917 -
1622815780.8534126-CDS-L-elsbetiae_contig18759:1354..14681622815780.8534126-CDS-L-elsbetiae_contig18759:1354..1468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18759 1355..1468 -
1691683098.0140886-CDS-L-elsbetiae_contig18759:1354..14681691683098.0140886-CDS-L-elsbetiae_contig18759:1354..1468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18759 1355..1468 -
1622815780.865863-CDS-L-elsbetiae_contig18759:2023..21491622815780.865863-CDS-L-elsbetiae_contig18759:2023..2149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18759 2024..2149 -
1691683098.0244703-CDS-L-elsbetiae_contig18759:2023..21491691683098.0244703-CDS-L-elsbetiae_contig18759:2023..2149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18759 2024..2149 -
1622815780.8790762-CDS-L-elsbetiae_contig18759:2471..26331622815780.8790762-CDS-L-elsbetiae_contig18759:2471..2633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18759 2472..2633 -
1691683098.0344326-CDS-L-elsbetiae_contig18759:2471..26331691683098.0344326-CDS-L-elsbetiae_contig18759:2471..2633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18759 2472..2633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18759.5492.1

>prot_L-elsbetiae_contig18759.5492.1 ID=prot_L-elsbetiae_contig18759.5492.1|Name=mRNA_L-elsbetiae_contig18759.5492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
GKSPPGKKKAFRRAAQKGDKGNDGGDDGEGGRPSWGTWTKAQAYLQILKE
LTGTDDEELQWLAVAKQGQGVQKSEKRQESAETEYHRLLCEESMQQAGLK
LIKDRRLEVALKAFGKLGNELERLTKLLEELEQKETTLITEDDEAEHQAS
AEVEAAAAELEVALAAAKASVEDGAEQCDEGAAVGRAVEAVTTARAAAEA
AVAAAAMSRASRQAQRERLEQERVEAEEKLG
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mRNA from alignment at L-elsbetiae_contig18759:626..2633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18759.5492.1 ID=mRNA_L-elsbetiae_contig18759.5492.1|Name=mRNA_L-elsbetiae_contig18759.5492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2008bp|location=Sequence derived from alignment at L-elsbetiae_contig18759:626..2633- (Laminarionema elsbetiae ELsaHSoW15)
GGCAAGTCGCCTCCCGGCAAGAAGAAAGCGTTCCGGCGGGCCGCGCAAAA
GGGCGACAAGGGCAACGATGGCGGTGATGACGGAGAGGGTGGTCGACCGT
CGTGGGGAACATGGACCAAAGCGCAGGCCTACCTGCAGATTCTAAAGGAG
CTGACTGGCACGGTAAGTCTGGTGGAAGCAGCTAGCCGTCGAAGGAGTGG
TGCACTGGTGGTACTGGTTAGGCTTTTTGTCTGCTTGGCCTGACGTCGTA
GCCTCTTTGGTCGATGATGGTCGTGTTACGGCGCTGTCTCATCGCTTGCT
TATCCGGGTCGTACATAGCTCCTCTGCACTTATACACAGCCGTCTCGTGT
CCTATCGTGCGTTGTGCCCTGACGGCTTGCCTGCATTTGTGTTGGGAATC
CGCTATGCTCCATTTCCCGACTGACGGCATGTATTCTGCTGCATTCTAAC
TCTTTGCGGGGACATGCGTCAAATTTGGCCACAGGATGACGAAGAGCTGC
AGTGGCTTGCGGTGGCAAAGCAAGGACAGGGTGTCCAGAAAAGTGAGAAG
CGTCAAGAAAGCGCCGAGACGGAGTACCACCGCCTCCTCTGCGAGGAATC
CATGCAGCAGGTGAGGGCAATGCCCGCATGCACAAGTTGTTTCTGCTTTC
ACCAGCCTGCAATGGTTGTTCAAGTTAACACTTAAACTGGGACAACAGGT
CCGCTGCCGCTGTGTCTGTAGAGAGGGCGTCGGTTCCATTCCGGCGGAAG
GCGTGAGTGCACGTGCGTATAATAAAGCATTTGTGTTCTTAAGTCACCAG
CCTCGTTTCTATCAAAGACGTCGTGATTTTTTCCGGCTGTGTTTGATTTT
CCCGCAGAGAATGTTGTTATCCACCCTGTACATCGTCTGCCGAGCAGAGC
ACCCACCAAACCAACCCAACTTCAACTTTGCGGGGGAAACCACCGACGCA
CAACAGCAGCAGGCTTACACATAATCAGATAATCAGGAACGCTCGAGAAG
CCGATTTTTACCTTGGCCTTAGACGACTGACTGCAAACGGCGATGTGTTG
GAAAATTGAAGGTAGATATGTATATGCGTCAAGTCGTTGGTAGGGTTGCC
TTTTCCGGCCTCAGATTCTACAGCAGTGCCGAACAACCTCGCAAAACCAT
GCACTTGTTCACCAGGCGGGACTGAAACTGATCAAGGACCGCCGTCTGGA
GGTGGCTCTCAAGGCCTTCGGCAAGCTGGGCAACGAGCTGGAACGCCTGA
CCAAGCTTCTCGAGGAACTGGAGCAGAAGGTGGGTTAAGCACGGCCTTGG
GTTAGCACCTCACCTACAGAGTACCGGCCCGCTTGTACATGGCACTTGTG
TCAGCCTGACTTTCTTCAACAGAGCTTTCGTATCAGCGGGCCGATGTTGC
TTGCAATATATTTGTTTTTGCCAACATGCGAAGACGTTACCCCGACTACT
ACGGTTAGTCGGCGCCATTTCGGTTACCATTCACCACCTACGCCAAAACA
CCGATCATCATCACCGTTTACTTGACGAAGGGGGTAGTTTCTCAAGTTTT
CGAGCTCTGACAGACTGCTTGTCGCAGTTTCTTCCTCCACCGACCTCGGC
CATCCTTAAAGCAGACACTGCCATCAAGGGCGTTTGTATTGATCTGCTAG
TGAGCATTCATTTATGCCCATCTGCTGAATACCCATCCCAACCGTCTCCC
TTTTCATCAACACCAGGAGACGACCCTCATTACCGAGGACGATGAGGCGG
AGCACCAAGCGTCCGCGGAGGTGGAGGCCGCGGCAGCAGAGCTTGAAGTA
GCGCTAGCGGCAGCAAAGGCTTCCGTGGAGGATGGCGCGGAACAGTGCGA
CGAGGGTGCGGCCGTGGGGCGAGCCGTAGAGGCTGTCACCACCGCCAGAG
CCGCTGCTGAGGCGGCCGTGGCTGCGGCAGCGATGTCGAGAGCCTCGCGG
CAAGCGCAGAGGGAACGTCTGGAGCAGGAGAGGGTAGAGGCGGAGGAGAA
GTTGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18759:626..2633-

>mRNA_L-elsbetiae_contig18759.5492.1 ID=mRNA_L-elsbetiae_contig18759.5492.1|Name=mRNA_L-elsbetiae_contig18759.5492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig18759:626..2633- (Laminarionema elsbetiae ELsaHSoW15)
GGCAAGTCGCCTCCCGGCAAGAAGAAAGCGTTCCGGCGGGCCGCGCAAAA
GGGCGACAAGGGCAACGATGGCGGTGATGACGGAGAGGGTGGTCGACCGT
CGTGGGGAACATGGACCAAAGCGCAGGCCTACCTGCAGATTCTAAAGGAG
CTGACTGGCACGGGCAAGTCGCCTCCCGGCAAGAAGAAAGCGTTCCGGCG
GGCCGCGCAAAAGGGCGACAAGGGCAACGATGGCGGTGATGACGGAGAGG
GTGGTCGACCGTCGTGGGGAACATGGACCAAAGCGCAGGCCTACCTGCAG
ATTCTAAAGGAGCTGACTGGCACGGATGACGAAGAGCTGCAGTGGCTTGC
GGTGGCAAAGCAAGGACAGGGTGTCCAGAAAAGTGAGAAGCGTCAAGAAA
GCGCCGAGACGGAGTACCACCGCCTCCTCTGCGAGGAATCCATGCAGCAG
GATGACGAAGAGCTGCAGTGGCTTGCGGTGGCAAAGCAAGGACAGGGTGT
CCAGAAAAGTGAGAAGCGTCAAGAAAGCGCCGAGACGGAGTACCACCGCC
TCCTCTGCGAGGAATCCATGCAGCAGGCGGGACTGAAACTGATCAAGGAC
CGCCGTCTGGAGGTGGCTCTCAAGGCCTTCGGCAAGCTGGGCAACGAGCT
GGAACGCCTGACCAAGCTTCTCGAGGAACTGGAGCAGAAGGCGGGACTGA
AACTGATCAAGGACCGCCGTCTGGAGGTGGCTCTCAAGGCCTTCGGCAAG
CTGGGCAACGAGCTGGAACGCCTGACCAAGCTTCTCGAGGAACTGGAGCA
GAAGGAGACGACCCTCATTACCGAGGACGATGAGGCGGAGCACCAAGCGT
CCGCGGAGGTGGAGGCCGCGGCAGCAGAGCTTGAAGTAGCGCTAGCGGCA
GCAAAGGCTTCCGTGGAGGATGGCGCGGAACAGTGCGACGAGGGTGCGGC
CGTGGGGCGAGCCGTAGAGGCTGTCACCACCGCCAGAGCCGCTGCTGAGG
CGGCCGTGGCTGCGGCAGCGATGTCGAGAGCCTCGCGGCAAGCGCAGAGG
GAACGTCTGGAGCAGGAGAGGGTAGAGGCGGAGGAGAAGTTGGGAGAGAC
GACCCTCATTACCGAGGACGATGAGGCGGAGCACCAAGCGTCCGCGGAGG
TGGAGGCCGCGGCAGCAGAGCTTGAAGTAGCGCTAGCGGCAGCAAAGGCT
TCCGTGGAGGATGGCGCGGAACAGTGCGACGAGGGTGCGGCCGTGGGGCG
AGCCGTAGAGGCTGTCACCACCGCCAGAGCCGCTGCTGAGGCGGCCGTGG
CTGCGGCAGCGATGTCGAGAGCCTCGCGGCAAGCGCAGAGGGAACGTCTG
GAGCAGGAGAGGGTAGAGGCGGAGGAGAAGTTGGGA
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