mRNA_L-elsbetiae_contig18751.5490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18751.5490.1
Unique NamemRNA_L-elsbetiae_contig18751.5490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: D7FVB8_ECTSI (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVB8_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 2.100e-46
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 RWLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCMLE 258
            RWLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEV PA V+GSAW EGEARRCKVVFIGR+LS +DLE G+RSCM++
Sbjct:  386 RWLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVTPAEVVGSAWQEGEARRCKVVFIGRLLSSRDLELGIRSCMVQ 471          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: A0A2I0HRN4_PUNGR (CobW C-terminal domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HRN4_PUNGR)

HSP 1 Score: 77.4 bits (189), Expect = 1.670e-16
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCML 255
            WLG LL +      ++YR+KG++SVEG +ERFV QGV D+F+ +P  +    W   EAR  K+VFIG+ L  Q+LE+G ++C+L
Sbjct:   38 WLGTLLLER---SEDIYRMKGLLSVEGMNERFVFQGVHDIFQGSPDRL----WGPDEARANKIVFIGKNLDAQELEKGFKACLL 114          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: A0A7I8LII8_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LII8_SPIIN)

HSP 1 Score: 80.5 bits (197), Expect = 8.680e-16
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCML 255
            WLG LL +      ++YR+KG++SV+G  +RFV QGV D+F+ +P       W EGE R  K+VFIGR L  Q+LE+G ++C+L
Sbjct:  388 WLGTLLLER---SDDIYRMKGIISVDGMSDRFVFQGVHDIFQGSP----DRPWREGEPRTNKLVFIGRNLDAQELEKGFKACLL 464          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: UPI00090135EB (uncharacterized protein LOC109165587 isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00090135EB)

HSP 1 Score: 79.7 bits (195), Expect = 1.620e-15
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCML 255
            WLG LL +      ++YR+KG++SV+G DERFV QGV D+F+ +P       WL  EAR  KVVFIG+ L  ++LE+G ++C+L
Sbjct:  386 WLGTLLMER---SEDIYRMKGLLSVQGMDERFVFQGVHDIFQGSP----DRPWLPDEARINKVVFIGKNLDSKELEQGFKACLL 462          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: A0A0A9JC14_ARUDO (CobW C-terminal domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JC14_ARUDO)

HSP 1 Score: 73.9 bits (180), Expect = 1.910e-15
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCMLE 258
            WLG LL +      ++YR+KG++SV G  +RFV QGV D+F+ +P  +    W   E R  K+VFIGR L++++LE+G + C+L+
Sbjct:    9 WLGNLLLEC---SDDIYRMKGLLSVSGMPQRFVFQGVHDIFQGSPERM----WEPNEPRINKIVFIGRNLNREELEKGFKDCLLK 86          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: A0A498HCX9_MALDO (CobW C-terminal domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498HCX9_MALDO)

HSP 1 Score: 74.3 bits (181), Expect = 2.710e-15
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCML 255
            WLG LL +      ++YR+KG++SV+G +ERFV QGV D+F+ +P       W   E R  K+VFIG+ L  Q+LE+G + C+L
Sbjct:   38 WLGTLLLER---SDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSP----DRPWGPNEPRTNKIVFIGKNLDAQELEKGFKGCLL 114          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: A0A7J9B0U6_9ROSI (CobW C-terminal domain-containing protein n=1 Tax=Gossypium laxum TaxID=34288 RepID=A0A7J9B0U6_9ROSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.920e-15
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCML 255
            WLG LL +      ++YR+KG++SV+G DERFV QGV D+F+ +P  +    W   E R  K+VFIG+ L+ ++LE+G ++C+L
Sbjct:   55 WLGTLLLER---SEDIYRMKGLLSVQGMDERFVFQGVHDIFQGSPDRL----WGADEPRINKIVFIGKNLNAEELEKGFKACLL 131          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: A0A251RVL6_HELAN (Putative plastid transcriptionally active 17 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RVL6_HELAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.980e-15
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCML 255
            WLG LL D      ++YR+KG++S+EG DERFV QGV D+F+ +P  +    W   E R  K+VFIG+ L  Q+LE+G ++C+L
Sbjct:  372 WLGTLLMDR---SEDIYRMKGLMSIEGMDERFVFQGVHDIFQGSPDRM----WKPDEPRVNKIVFIGKNLDAQELEKGFKTCLL 448          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: Q9FUB1_ARATH (PRLI-interacting factor L (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FUB1_ARATH)

HSP 1 Score: 77.0 bits (188), Expect = 3.530e-15
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCML 255
            WLG LL+       ++YR+KG++SV+  DERFV QGV ++FE +P  +    W + E R  K+VFIG+ L++++LE G R+C++
Sbjct:  169 WLGALLYQR---NEDIYRMKGILSVQDMDERFVFQGVHEIFEGSPDRL----WRKDETRTNKIVFIGKNLNREELEMGFRACLI 245          
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Match: A0A5N6LG54_9ASTR (CobW C-terminal domain-containing protein n=3 Tax=Asteraceae TaxID=4210 RepID=A0A5N6LG54_9ASTR)

HSP 1 Score: 78.6 bits (192), Expect = 4.100e-15
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 WLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVIGSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCML 255
            WLG LL D      ++YR+KG++S+EG DERFV QGV D+F+ +P  +    W   E R  K+VFIG+ L  Q+LE+G ++C+L
Sbjct:  374 WLGTLLMDR---SEDIYRMKGLLSIEGMDERFVFQGVHDIFQGSPDRL----WNPDEPRVNKIVFIGKNLDAQELEKGFKTCLL 450          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18751.5490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVB8_ECTSI2.100e-4687.21CobW C-terminal domain-containing protein n=2 Tax=... [more]
A0A2I0HRN4_PUNGR1.670e-1646.43CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7I8LII8_SPIIN8.680e-1646.43Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
UPI00090135EB1.620e-1547.62uncharacterized protein LOC109165587 isoform X1 n=... [more]
A0A0A9JC14_ARUDO1.910e-1542.35CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A498HCX9_MALDO2.710e-1544.05CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7J9B0U6_9ROSI2.920e-1544.05CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A251RVL6_HELAN2.980e-1546.43Putative plastid transcriptionally active 17 n=1 T... [more]
Q9FUB1_ARATH3.530e-1542.86PRLI-interacting factor L (Fragment) n=1 Tax=Arabi... [more]
A0A5N6LG54_9ASTR4.100e-1546.43CobW C-terminal domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18751contigL-elsbetiae_contig18751:2738..3001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.3e-38
Seed eggNOG ortholog2880.D7FVB8
Preferred nameCBWD1
KEGG koko:K12605
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Ec32 ortholog descriptionCobW/HypB/UreG domain
Ec32 orthologEc-14_000520.1
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.7102823-CDS-L-elsbetiae_contig18751:2737..30011622815780.7102823-CDS-L-elsbetiae_contig18751:2737..3001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18751 2738..3001 -
1691683097.9552808-CDS-L-elsbetiae_contig18751:2737..30011691683097.9552808-CDS-L-elsbetiae_contig18751:2737..3001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18751 2738..3001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18751.5490.1prot_L-elsbetiae_contig18751.5490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18751 2738..3001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18751.5490.1

>prot_L-elsbetiae_contig18751.5490.1 ID=prot_L-elsbetiae_contig18751.5490.1|Name=mRNA_L-elsbetiae_contig18751.5490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
RWLGGLLWDPPPGGTEVYRVKGVVSVEGRDERFVVQGVADLFEVAPAGVI
GSAWLEGEARRCKVVFIGRMLSKQDLERGLRSCMLEG*
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mRNA from alignment at L-elsbetiae_contig18751:2738..3001-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18751.5490.1 ID=mRNA_L-elsbetiae_contig18751.5490.1|Name=mRNA_L-elsbetiae_contig18751.5490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig18751:2738..3001- (Laminarionema elsbetiae ELsaHSoW15)
CGGTGGCTTGGGGGCTTGCTTTGGGACCCGCCCCCAGGTGGGACAGAAGT TTACCGCGTGAAAGGGGTGGTGAGCGTGGAGGGCAGGGATGAGCGCTTTG TTGTTCAAGGCGTGGCTGATTTGTTTGAGGTGGCGCCGGCGGGTGTGATT GGCAGCGCTTGGCTGGAGGGAGAGGCTCGGCGGTGCAAGGTTGTGTTCAT CGGGAGGATGCTGTCTAAGCAGGACCTTGAGCGAGGTTTGAGGTCGTGCA TGCTTGAGGGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18751:2738..3001-

>mRNA_L-elsbetiae_contig18751.5490.1 ID=mRNA_L-elsbetiae_contig18751.5490.1|Name=mRNA_L-elsbetiae_contig18751.5490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig18751:2738..3001- (Laminarionema elsbetiae ELsaHSoW15)
CGGTGGCTTGGGGGCTTGCTTTGGGACCCGCCCCCAGGTGGGACAGAAGT
TTACCGCGTGAAAGGGGTGGTGAGCGTGGAGGGCAGGGATGAGCGCTTTG
TTGTTCAAGGCGTGGCTGATTTGTTTGAGGTGGCGCCGGCGGGTGTGATT
GGCAGCGCTTGGCTGGAGGGAGAGGCTCGGCGGTGCAAGGTTGTGTTCAT
CGGGAGGATGCTGTCTAAGCAGGACCTTGAGCGAGGTTTGAGGTCGTGCA
TGCTTGAGGGCTAGCGGTGGCTTGGGGGCTTGCTTTGGGACCCGCCCCCA
GGTGGGACAGAAGTTTACCGCGTGAAAGGGGTGGTGAGCGTGGAGGGCAG
GGATGAGCGCTTTGTTGTTCAAGGCGTGGCTGATTTGTTTGAGGTGGCGC
CGGCGGGTGTGATTGGCAGCGCTTGGCTGGAGGGAGAGGCTCGGCGGTGC
AAGGTTGTGTTCATCGGGAGGATGCTGTCTAAGCAGGACCTTGAGCGAGG
TTTGAGGTCGTGCATGCTTGAGGGCTAG
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