mRNA_L-elsbetiae_contig1875.5486.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1875.5486.1
Unique NamemRNA_L-elsbetiae_contig1875.5486.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1875.5486.1 vs. uniprot
Match: D8LG94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG94_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.460e-25
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    4 LHGGLVNLLYDDGERETRVSLSLVRHRGAPAPWCSDSDASSGSDRSEEGAEAEVRGLQVPREKKNQAGGWEVIIQKPKKTRVERVESRXXXXXXXXXXXXXXXXXXXXVAAREALRKKL 360
            LHGG VNLLYDDGERETRV L+LVRHRGA A    DSD+    D S+EGAEA    L   +++  QA GWEV++QKPKKTRVERVESR  XXXXXXXXXXXXXXXXX +AAREALRKKL
Sbjct:  188 LHGGFVNLLYDDGERETRVPLALVRHRGATAAMTMDSDS---GDSSDEGAEAPR--LPTAKQRSKQADGWEVMVQKPKKTRVERVESRIEXXXXXXXXXXXXXXXXXELAAREALRKKL 301
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1875.5486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG94_ECTSI5.460e-2571.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1875contigL-elsbetiae_contig1875:7302..9452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1291
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1875.5486.1prot_L-elsbetiae_contig1875.5486.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1875 8228..9452 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.3832488-UTR-L-elsbetiae_contig1875:7301..82271622815780.3832488-UTR-L-elsbetiae_contig1875:7301..8227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1875 7302..8227 -
1691683097.767254-UTR-L-elsbetiae_contig1875:7301..82271691683097.767254-UTR-L-elsbetiae_contig1875:7301..8227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1875 7302..8227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.3963873-CDS-L-elsbetiae_contig1875:8227..83741622815780.3963873-CDS-L-elsbetiae_contig1875:8227..8374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1875 8228..8374 -
1691683097.7770495-CDS-L-elsbetiae_contig1875:8227..83741691683097.7770495-CDS-L-elsbetiae_contig1875:8227..8374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1875 8228..8374 -
1622815780.4102817-CDS-L-elsbetiae_contig1875:8706..87741622815780.4102817-CDS-L-elsbetiae_contig1875:8706..8774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1875 8707..8774 -
1691683097.7855656-CDS-L-elsbetiae_contig1875:8706..87741691683097.7855656-CDS-L-elsbetiae_contig1875:8706..8774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1875 8707..8774 -
1622815780.4225316-CDS-L-elsbetiae_contig1875:9304..94521622815780.4225316-CDS-L-elsbetiae_contig1875:9304..9452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1875 9305..9452 -
1691683097.7976274-CDS-L-elsbetiae_contig1875:9304..94521691683097.7976274-CDS-L-elsbetiae_contig1875:9304..9452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1875 9305..9452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1875.5486.1

>prot_L-elsbetiae_contig1875.5486.1 ID=prot_L-elsbetiae_contig1875.5486.1|Name=mRNA_L-elsbetiae_contig1875.5486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
TLHGGLVNLLYDDGERETRVSLSLVRHRGAPAPWCSDSDASSGSDRSEEG
AEAEVRGLQVPREKKNQAGGWEVIIQKPKKTRVERVESRVEANSNLKNRL
KRQKKREKEVAAREALRKKL*
back to top

mRNA from alignment at L-elsbetiae_contig1875:7302..9452-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1875.5486.1 ID=mRNA_L-elsbetiae_contig1875.5486.1|Name=mRNA_L-elsbetiae_contig1875.5486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2151bp|location=Sequence derived from alignment at L-elsbetiae_contig1875:7302..9452- (Laminarionema elsbetiae ELsaHSoW15)
ACGTTGCATGGTGGCCTGGTGAATTTGTTGTACGATGACGGGGAAAGAGA
GACCAGGGTGTCCCTGTCTCTCGTGAGACACCGTGGCGCACCAGCGCCCT
GGTGCTCGGACTCCGATGCCAGTTCTGGTTCGGACCGCAGTGAGGAAGGT
GTGAAGGTGCATGGGGGAAGGAAAGCCGTGGATGGCGGATCAAAACCCCA
CCAGAATCAGCGTTTGTTCTAGACATGGTTAACGCCACCTGTCCGAAATA
TGGAGCTGAAGAGCTCTGTGGTCTGGGGACGCTGATGACTCCAGCGCCCT
CCCTCGTTCTCCTTGCATCCTGAATGCCCCATACGTAGCAGTACACTTTG
CACACATCAGGAAAACCATGGTGGAGGTAGATGAGCCAACGCTTTGCCCG
GCTCGGCATTCTATGCATTCAGTTGACTCGATGCACTCACAATCACCCAG
CAGTTTCTGCGTTTGTCACTGCGAGAAAAGCATCTCACTGACACAGCAAG
TCGGTGGCGTAAAATTGACACTATCGCGGCTTGAAAAGGTTTTCGCGACA
TCCGACCGTCTCAACCTTACAATTTTATGAGGCTGCCGATTTCCGCAGGT
TGAGCGCCTTGGACTTTCTAAGCATTGCGCACTTAGCGCTAATTCCATCA
TCTTCTTTTGCATCCGATGTCTCCCGAGGTGCAGAAGCAGAGGTACGCGG
CCTGCAGGTTCCCCGAGAAAAAAAGAATCAAGCGGGCGGATGGGAGGTAC
GCTGTTGTCCCCAGGGGGCAGTTGCAGCACCTGTATGTATCATTCATATG
TACGATCCGCGTGGTTTAGCGTCCGCGACGAGGGTTGGCTGTGCATCAGT
ATCCAAAATTCGCTGCCAGAGGCCGCTCTGTTTTAGGCTGTGGTGGCCAT
GGTTTGTTGGGGTGGTACATCTCTGACGCGTTATGTTCGTGAAATTGCTT
TGCAGGATGTATGGTAAAGGTGGAAACCATATTTGGCTTACCGGTAGGTA
GCTCCCGCCATGACCCGACCTGTTCCGTTTCGATCGCAACGCTCGTTTTG
GCTGCTGCGTGCATGTGGTGTTCTGCAGGTCATCATCCAGAAACCCAAGA
AAACAAGAGTGGAGCGCGTGGAGTCTCGCGTAGAAGCTAACTCTAACCTC
AAGAACAGGCTGAAACGCCAGAAGAAGAGGGAGAAGGAGGTCGCCGCGCG
AGAAGCGCTGAGAAAGAAGCTTTGATCTACTGCTCGTTGTGTGACTCGTC
CCCATGAGAGCTGTAACAAGGGTGGGCTGCGTGGTTGGGCGTAGTTTGCC
GAGTCGGAAAACCAGAGAAGATCATGATGAATTTGCAGATTTTCTTGGCC
GTCCCTGGGGGGGACGCAACCGCCACAAGAACGGTCTTGCGACAATCGAT
AGAAGCCCGAGGATATAGTTGGCTGTTGAGTCCCTTTTGCAAAGGACGCG
TAAAGAGTACCTGGTACAATTTTGTACAATTTTGTACACGGCATCCATAC
GAACACCCGGTTGTTCGCAGCATTGATGTCCTTACTGCAGGTATTCGTCG
CCTGTACCGCAGCCTAAGTCGACAAAAACGGGCAACCATGGTGCCGGAAT
GATCGTGAACCGACCATTGTTGTGGCCGATGTCATAGTGTGTATGACAAG
CTACCGTCGAAGTTAGCACATGCATTCGTTGAGTGGGTTCAACGATACAA
GTTGCCTTTGAGCATGGACTAAGCATCTGGGGCAGAACCCAGCTCCTGGG
GATAGAGTCGCTGCCGCTCAATTCGGGCCGGAAGTAGTGCCTTGATTGCC
AGGAGGTTTTGATTGGTCTTGCACTAGGCGGCCTTGTGTGTGAAAATATG
ACAACGCGATGTTTCTTGCGTTCAATACTATCTATGGTGGAAATACTTCT
CACCCTTTGTATCAATGATCAAGCCTCGATATGGTTGTCGCGAAAAAACT
AAAACTACTAGACTACTCCGGAGTACATATCGCACTGCTTTCTTGTGAAA
CCTGCAACCTGTAAGACTGAATATTCCCACAGGCCTTCCGTACTCCGCGT
CTTCCCCAAACGACGGCACCTTGAAACAACCCGTGTCGTCGGCGAAAATG
AATTACTTAAGCTTTTTTCGGGGGTTCAAATGAAACAAGGAGGCATGGGG
C
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1875:7302..9452-

>mRNA_L-elsbetiae_contig1875.5486.1 ID=mRNA_L-elsbetiae_contig1875.5486.1|Name=mRNA_L-elsbetiae_contig1875.5486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1875:7302..9452- (Laminarionema elsbetiae ELsaHSoW15)
ACGTTGCATGGTGGCCTGGTGAATTTGTTGTACGATGACGGGGAAAGAGA
GACCAGGGTGTCCCTGTCTCTCGTGAGACACCGTGGCGCACCAGCGCCCT
GGTGCTCGGACTCCGATGCCAGTTCTGGTTCGGACCGCAGTGAGGAAGAC
GTTGCATGGTGGCCTGGTGAATTTGTTGTACGATGACGGGGAAAGAGAGA
CCAGGGTGTCCCTGTCTCTCGTGAGACACCGTGGCGCACCAGCGCCCTGG
TGCTCGGACTCCGATGCCAGTTCTGGTTCGGACCGCAGTGAGGAAGGTGC
AGAAGCAGAGGTACGCGGCCTGCAGGTTCCCCGAGAAAAAAAGAATCAAG
CGGGCGGATGGGAGGTGCAGAAGCAGAGGTACGCGGCCTGCAGGTTCCCC
GAGAAAAAAAGAATCAAGCGGGCGGATGGGAGGTCATCATCCAGAAACCC
AAGAAAACAAGAGTGGAGCGCGTGGAGTCTCGCGTAGAAGCTAACTCTAA
CCTCAAGAACAGGCTGAAACGCCAGAAGAAGAGGGAGAAGGAGGTCGCCG
CGCGAGAAGCGCTGAGAAAGAAGCTTTGAGTCATCATCCAGAAACCCAAG
AAAACAAGAGTGGAGCGCGTGGAGTCTCGCGTAGAAGCTAACTCTAACCT
CAAGAACAGGCTGAAACGCCAGAAGAAGAGGGAGAAGGAGGTCGCCGCGC
GAGAAGCGCTGAGAAAGAAGCTTTGA
back to top