mRNA_L-elsbetiae_contig1873.5480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1873.5480.1
Unique NamemRNA_L-elsbetiae_contig1873.5480.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1873.5480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1873contigL-elsbetiae_contig1873:5956..13936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1873.5480.1prot_L-elsbetiae_contig1873.5480.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1873 5956..13852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.7727518-CDS-L-elsbetiae_contig1873:5955..61061622815779.7727518-CDS-L-elsbetiae_contig1873:5955..6106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1873 5956..6106 -
1691683097.3240292-CDS-L-elsbetiae_contig1873:5955..61061691683097.3240292-CDS-L-elsbetiae_contig1873:5955..6106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1873 5956..6106 -
1622815779.7864497-CDS-L-elsbetiae_contig1873:13802..138521622815779.7864497-CDS-L-elsbetiae_contig1873:13802..13852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1873 13803..13852 -
1691683097.332951-CDS-L-elsbetiae_contig1873:13802..138521691683097.332951-CDS-L-elsbetiae_contig1873:13802..13852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1873 13803..13852 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.7987468-UTR-L-elsbetiae_contig1873:13852..139361622815779.7987468-UTR-L-elsbetiae_contig1873:13852..13936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1873 13853..13936 -
1691683097.3436246-UTR-L-elsbetiae_contig1873:13852..139361691683097.3436246-UTR-L-elsbetiae_contig1873:13852..13936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1873 13853..13936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1873.5480.1

>prot_L-elsbetiae_contig1873.5480.1 ID=prot_L-elsbetiae_contig1873.5480.1|Name=mRNA_L-elsbetiae_contig1873.5480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MKSWPTRPCPIAVLDSSCSCLNTMIEQRAGSSLRSATAAVTWLALLIVCY
CHGRKGSGIDDLRFFLW
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mRNA from alignment at L-elsbetiae_contig1873:5956..13936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1873.5480.1 ID=mRNA_L-elsbetiae_contig1873.5480.1|Name=mRNA_L-elsbetiae_contig1873.5480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7981bp|location=Sequence derived from alignment at L-elsbetiae_contig1873:5956..13936- (Laminarionema elsbetiae ELsaHSoW15)
GGCACCTGTAGCTACTTCTGCTGCTTTCACGACCGGTGGGGTTTGCATAG
AATACTACAGGCTGACTGACGGGTGTGGCTACACATGAAGTCCTGGCCAA
CGCGCCCCTGCCCTATTGCTGTCCTCGATTCCAGGTGTGCAATAGCATTT
TCGAGGGGGCAGGAGGGATAGGATAGTCTAGGGCTATGCGATGGGTTTGA
GAGTTGAACACGTCAGTAGGCAGACGGCAGCAGTCAGTAGGGTCCGTACA
GATAGACAAGGTTTGGGCGTTGTTTGCCCCCCCCTTCCAGTGAAAACGAA
TCCAAGGCAATGGCTAACGCATACTTGTGTCAAGTGTTGCTGTTGCCGAA
AAGATGCACAACGGAATAGGGGAGACCCTATTTCCAGGACGCACCTGCAA
CGAATTATGTACGTGCAGGGACGTTCCTCTGATTGGTTGACAGCCGGCCG
CGTGTTTTTCCACGAACGCCTGCCGAACGCGCGGCGAAGCCTGCGCGAGG
CACTTTTGGGCCCCGGACCGGCCACAAGGTCACGGTTACGGGTTGGGGTT
AGCTGGGGGGTGACAACGATTTTTGGAATTAGACAAATTTGAAAATGTCC
GAACAAGCACACACTATCTAAGCACACAGCCGATCTACCAGACCAGTAGG
GAAGCGTTGCGCAAGAAGAAATCTATTCGTTCGCTCACCCAGGGGGTAGT
GGGGCTGTTCTTTGCATACACATCACACAGTCTACCTCCAACCGCGAACT
TTAAAACCAAAACAAAAAATCCCGCACTCTAAAACCAAGCCAGAACAGGC
CATTTTGCGGTCGTTCAAAACAAGGTTCGGCATATTTGATTTTTCGTATG
ACACAGCTCTGTACGTAGAGGATACCATGGGGAAGGGTGTGATGCGTGCT
GGCATGTGCAGATCTTCTTCTGGGGTGAAGTTATGGAGCACGCAACAGTA
GCTCCACAGAACTCCGCAATCGGCGGACGACGGCAAACATCCACTGCTGA
GTTCGCCGCCACAGACCTCAACCTCCTGAATTGCGGGTCCACAGCAGTAG
CTCATACTACTGCTGGAGGCCCGTGGTTGAGGAGGTTGGGATCTGCGGTG
GCGAGCACATCAGTGGATGTCTGCTGTCGTTGGCCCAGATTGCGGAGTTT
TGCAGGACTGCTGCGGTGCTCGATAACTCCGCCCCAGAAGCAGATCTGCA
CATGCCAGCACGCATCACACCCTTCCCCATGGTGTCCTCTACGCACAGAG
TTGTGTAATACGAAGAATACCTGATCCTAAACCTTTTTAGAAGCTACATA
AGCGGTTTAACTTGGTTTTTGAATACCGTAAACCCCTTTGAGTTACCCCC
CCGACCGGGATAGCGCCCTCTACCAGGGTTAAACCGCTTCTCGATCACAA
AAACTTTGAGTTAGCCCCGGGGCGAAATGCATTTTTGTTTTTTTTCGCCC
CTCTACCTTTGAGTTACCCCCGGGGCGTTTTTTTTTTTTACGTTTTTTGG
GGGGAAGCCCCAGGGCGTGACGACATTTATCCCGGCAACTGGTTGTTGCG
TGGTAACATGTTGTTGCTGGTGTTGTTGTATTTGTCTTCCGCTTGCCATC
CGACAATCGCACGTTCAAAGGTCCCCCGTATTCCTGTTATGTCATGTAGC
TAGACACAGTCGTATCTTCGTGATTCGACTTCAGTAGCACGATAACAACG
TGCACACACAGGCACGCCGTAGGCCTAGCAATTAGCTGAGCAGCAGAAGA
GAATAACTGCAAGTACCCGCAAGCAAGTAAATTGCCGAGACTGTCAGTAT
ATCGGAAATAAGTTCCAAAAAGTCCGGGGGAACCTACGTCACCAGTAGAC
GGATGAACGTCGCCGAGGCTCCTCCGGATTGTTGTTGAAGCTTTTTGTTA
TTGTTGGAGAAGCTCGAGCACGCACACGCCTGTTCTGTTTGCTCCCTTCT
ACTAACCACTAAAATCTGACCAAGGACTCGTCAGTAAGCCATCTTCCTTC
TCTTTTCTTCGGGTCCGAGGTACACTCCGAGTCGCATCTGCATTCATTTT
TTTTTCTCCTCCAGTATTGACATATTCGTCGTCTGCCCCACTGGCCCCCA
TAATCGACTACGATTAGCTAGACGACCCAACCGGGGTCACACAGGAGGGG
GGGGTGGACCCCCTCCTGCGGTGCCTCCCTTAGATGTTTTCTCGCGAGCA
GGGTTCAGCACTCGTCACCCTCGTCAACAATGAAGTCGAAGTAATATTTG
CTAATGAAATCGCTTTCAATTTTTCAGGAACGAATGCGAGAAAAAAACTC
ACTGCGCAGGAGCTCGAACCCAGGACCTGGTTCTTAGAAGGTTACGTGGG
TACAAACTAGACCACCGGGGCGACCAAGTGTACACCTCTAGACAACAGGC
ACACGCCTGTAAATCCTCCCACAACAGCACCGCTACCACGCTACTGCTGC
ACAGAGCTTTTGCCGTCAGAAGGCTCCCCTCAGGCATACTAAACAGTTTT
CTAAGGGTAGCGTCGAGTATCGCCGGTGCATTTCAACCCCAACGGCAAAA
AACACCGCCGGCGGAGAGAGCTCACTACATCGCAGTCCGGCTCTCGCCCG
CTACATAGATCATTTATTCATGTGAAACCTTCTTGGCTGTCACCTCCACA
AACGTACGTCATCTGGGTGGGCGGGGGTTGGCGTGGGCGCCTTCAGTCCA
CGGCGATGCGACAGGCTGAAGGCGCCCACTGCCACCCCACGCCCACCCGG
ATGAGATACGTTTGTAGAGGTGACAGCCAAGAAGGTGTCATAGGAATATA
TGGTCTAGCGGGCGAGAGCTGAACTGCGACGCCGTGTGCTCTCCTTGCGG
CCAGCTTATTTTTTGCTGTTTTAAGGCATAAACGAAGCTTTCTCCAGACA
CCCTGCACAAAAGTTTTCTTCCCACATGACTAACGGGTTCCCTCCATACA
CCAGCGGCTGGCGCGTTGACGCGAAGACTCTAGGGTTATCCGGAGCGGTT
TACAACGTCGTTACGTTCAGCATTGAGGGCATAGTGGTCGGTGCTGGTGA
CTGGGGTCTGCAGGAGAAATAATCTCGTCGCCTCCGGGCAAGATTTATCG
AGCTGCCAGATGAACAAATGTTGGGCCAACATTTGCTCGAAAGCCAACAT
TTTGGCCGCAATCCAAATCTTGGGCAAGGTTTTGTCAAAGATTTGTTCCC
ATAAAATGACTACATAAACATCTTGCTCAAAATATTTTCTTCCTTCTGTA
AACATGGGTGAAATCAAAGTTTGCACAACTTTTCAGAGCTTAGCCGAGGA
TGGTTCGTTCATAAACCTCATTAAAAAAAAATCCATATCGGTCAACCGCG
GAAGGCGCCCTATGTTAGGTACGAAATGTGAGATAAATCTGTCCCTGGGA
CGACTTTTTCACAGGTCGGAGAGAAAGTGGGAGAGATAGAGAGAGATACA
GAGAGATAGAGAGAGAGAGGGAGGGGGAGACACACACACAAACACAGCGA
GATACCGGCAAAGGCAGAGACATTTAAGCAATTCCAAGGCAGCGATAAAT
ATAGAGGCAGAGGTACATAAATATATGACATGTAGAAACGGCATTTGAGC
GTTTGACACAAACTTGAGAACAATCCCTGTCAGCAGGGCTACTCCACGAG
CAAGCATAGCTTCCCCTGTGGCTGTTTCACCCTTTTTGTGCCCAACCCCC
CCAAAAAACTTAGCTATGTATCGTAAAAGCAATATCCCGCCATTCTGGCC
GAGAAAGACAGCCCGCAGAACCTGAGCTGCCGCGTGTGATTCGCATGCAG
CAGCCCTCATAAAACCTAAGAGAGTGCGGCGGGCGAGACATATTCGCTTA
CACTCAGCAGACGATGGTTCCCCACAAATTGTCACCAAACGGGCTTCTAG
TTCTCAAAAGATTCCTTAGTAAATACTCGGAGTATGGCGCTGCCGCGCGT
GTACCCGTGTGCACAACAACACACAGAAAGAGCGACCAATGGCAGGGCTA
CACATCACGAACAATATGACCGCACCCAGATTGACACTACACTTTTGTGC
TGGGTGCCCGAGAGAGAGAGAGAGAGAGAGACGGGAAGCGATGCAGGAAC
GCGGGAGTACCAAGGAAAAATCGAAATTTCCAAATTTCAGAAGGAGAAGC
ACGATGCGCACAAAGCTCACGCTCCGATCATTGTAGCAGTAAGACACATC
GCAAGAAGACAGCTACAGTTGTCCCCCCCAGCAGGAAATCTTGCTATAAC
TGAGAAAACGAGGCTAGACCTTTCACGGAAAACAAGCCTAATATACCTGA
AACTGGGCGCTGCTATACGAAGCATCCATATACCATAGAGCCGTGGGCCT
GGTTGTGCTCATTATCAGGTCTGCTGCTGGGGAGGAGGCATGGTCACAAT
CTGGGCCGAAACCAAACGTTCGATGCGGCTGTGCTCGCATGCCTCGGCGT
CAAGTTTCTGAAGTGCGGGTCACCCAAGGTAGCTAAATAGTGGCATGGGA
TACTCCTGTAACCCCGCGATTGAGGAGGTTGGGGCCTGTGGTGGCGAGCA
CAGCAGTGGAAAATGTTTTAGTGTCGGTCCAGCTTGTGCAGGTCTGGAGC
TACTGCTGAAGCCGTACGTATTTCCTCCCCAGCAGCAGATCTCAGCATGA
CAACACACATCACACCTTCTCCATGGTGTCTGCTGCTGATATCACCCTTC
CGTACGGAGTCTCCCAACCCGCATTTAGTTGGAGCTAAGCCGTTTTGCGT
GTTTGCCTTTGATTTTGGCTCAGGAAGAAAAATATCCTGATTTCAAGTGT
GCAGTTGGAGGTAGACTACCTGATATGTGTGCAAAGAGCAGCCCCGCTTG
CCGCTCATTGAGCAACCCAGCACGTTTCTTTCACGCAACGATTACCTATC
GATCCGGTGGATCTGCTGTGTGATTGATGTTGTGCTATTTCCGGCAACTT
CGAATTCGCCAGTTCCAAAGAAGCTGTCACCCCCCTCCCTTAGAAACTAC
AGGGGGCTTGGGAAGCCTGTGCCTACTAGGAAACATCCTAGACACAAATA
CACCATTGCATAGCCGCCAGATCAACTGTGTATTTTGGATTCTGTCCTGG
GGGGGTGCGGAGTGTTGTATGCGGTATGCGGATGTCGTACGTACGGAAAT
TCATACGACGAAGCTAACAAAAAACAAGATAATACCTTTGACGAAAACCA
GCTTGACGAAATCAGCACGATTCGGTGGCCGAGAAATATAGGAAATCCAC
TTCAAGAAAAATAACCTCTGATGCTAGTGTTCGCTCCCGAAGTAGACTTT
GGGCCTCAACCGTAGTCGGTGCCAGCAGAGTGCGCCATTGTCTAGGCACG
CTAGCTACAGAAGGCATACCACGAGAACAGGCACGCATGTTTAAATAACA
GCTTAAGTCTCACATTTTGACACATCGAGTGCAAGCACTCTTTGGAACGG
GATGCCCTTCCTTCCGTCGGACAGAGAGAGCCCATCCGAGATGCCTTCGA
TTCTGAACGATTGCACTACACACGTAACCAACCAACCGGGCTCAACTCAG
CAGAGAATGAATGGTGCTGCGAGCAACAAAAGAGCGCCCGACTCAGCGCA
CTAAGTCCAGAAAGAAACGTGCACAGGGGACTACTGCCTTCGCCCTTCGT
CACAGAGGTGCGTGTAATTTCGGTATGTTGCATGTTCCTTTCCTTCACGC
AAGTTTCCTTCCTTTTTACCAATGCAGAGTAAACTTGATGTTTACAAATG
TGATAACGTGTCGGCAACACTGTTGTAGCCACGTTTCCGGAATGAAGGTT
TTGCGTGGTTGAATCTGGTTGCTCCCTGCAGAGAGGCTCGGTATAGCGGC
CGGCCCCTGACTAGTAAAACTGCCGACATATAGCGGCATCGAAAAAGCCT
GTTACAGGTCAGCCGGAATAGCGGGAAAATGTCACGATTGAAAATGCCGC
CCTTAAGTCGTTTGTAAACAGTGGCCTACATTTCGGCCTTCCCCGAACGC
GCTGCCAGACATCTCCGGATAAAAAGTTGCTATTTTCTATTGTAGCAGCT
GGAGGCCATTTCTGCCCTGTCACAACCCGGTGCATGTTTTTTTCACCCAT
TAACTCTCTCCGTAGAGGTGCGGACACGAAATAAACGGAACACCCCAAAT
AAGAGAAACACAGTTGCTAGCAAAATCACCGCTGCGCTTCACATATAAGT
CGGTCTGGACGGGGCACACGAGCAGACAAGCGAAGCAGAATTGCTTTACT
CCCCCGATATTCGGCTGATTTTTTGTCGGACGACTATACTCCTCGCGGTA
CTCGTTTACGTAGCAATGCAGGACCAACAAGCCCGCCGCGCCGGCATCGT
CGAGGTATCATATAGATCCCCGTTTCGAAAGCAAGACCTCGGAGGCGTCC
AAGCTCTCGCAATGTACAATAGCGTGAACCGAATTGTGCGTGAAATGTTT
TGGGGGATCGGTTGTTGACCTCAAATTCGGCGAAATACTATGTACACATT
AACGTGATGGAGACAGATCAAAGCCTTCAAATAATTTCTGCGCGCGGTCG
TGAGCCTTGAGGCGACTTTAAGCCAATGGGTTTGCTTGGGTGTGTGCCTC
GGCAGCGCCCACACGGCACCCACGGGGGCTGGGACTGAAAAAATACCCAT
TTCGAACTTGTCGGAATCTAAACAGTCGGAGAACAATCGGAGGCGCTTCA
ATTTCGGAAATGGCCAAAGCAATTTCGGTGTTGTCCGACAAACAGACCTG
ATTTCAGCCTTGCGCCAAAAAAGAGGTCTTATCAATAATCTGCCTTAATA
TCAGCAGTGACGTTTTGAGGCTGGAATAGCGGCGATACTAAAATATTCAA
GCTGCAAGACCCTTGCCCTGTTCGCGCTCTCTCTCTCTACGCACACACAC
ACGCACACACACGCGGTGGCCGCCACCACGAGCTCATATACTCATGATCC
CAACATGAGCGGATGAGATTTGGACACCGAGATCCTCCGCACGGCGATTT
TGTTTAGAATACGCCAACATGTTGTTGAGTATGCCAGGCTTCCTGACGAA
CATATTTAGCCAGGTCTGTAGCACTAACAACATCGAACGAGAACTGGGGT
AGAGAGTTATAGTTCCGCCGTGATGCCTGAGCTGTCGTTGCGCTTTGATC
GTTGCGCTTTGATGTAATAGAAACGTACGCAAGACCATTTGACATGGGCA
AGGCACAGCGTTATGGCCGCACATGGTGGTGGAGCGCTATGCGACACACC
GCAGCGCCTCTTTGAATTCTCTGTGGAAACTTCTGCAGTGAATCACCACG
GACGGTAGGGCAGCGCAAAACTCCACAAAAAGTTCACCTACTGTAACGGC
GACTTCCCACGCGGGCACCGTGGCTCTCCGATTTGCTAACCGCTGTATAA
TACCCTACCAACCGCGGCTAGCCACATTTCTACCACGGTTAGCTGCCTGA
CTTTCCGTCGCTCACCGTGGCGCGTAGCGCGTTGAAGGTCCGGTACTGTT
CCTATAAAAAACAACTATAATGAGAAGTTGGTACCAACATTGATTGCTCT
CGACGATGCACACAATGTTTCCAATGAAGTGACCTACACAGTTGCCACTG
CGCCGACGAACAAAGAAGAAAATGAATTTCTTTGTTTTATTTTAAAGAAG
AAAATGAACTACTGGATTCCCTTGTGTGCACTGCAGGCCCTTCTGCCTGG
GGTTTTATTGTTTTGGGCGGTAATGACCGTGATACTCACGGCCGTCATCA
CCACCAATTTCGACCAGTCGTCCTGGCTCTGAATCTGACCACATCTACAC
GCGGCGTTTCTGTACCGTCCCTGACAGCAGTTGCTCCTGCCTCAATACCA
TGATCGAGCAAAGGGCTGGTTCTTCCCTGCGCAGTGCTACTGCCGCTGTC
ACCTGGTTGGCGCTTCTGATCGTCTGCTACTGCCACGGCCGCAAGGGTAG
TGGTATTGACGATTTGCGTTTTTTTCTCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1873:5956..13936-

>mRNA_L-elsbetiae_contig1873.5480.1 ID=mRNA_L-elsbetiae_contig1873.5480.1|Name=mRNA_L-elsbetiae_contig1873.5480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig1873:5956..13936- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTCCTGGCCAACGCGCCCCTGCCCTATTGCTGTCCTCGATTCCAG
ATGAAGTCCTGGCCAACGCGCCCCTGCCCTATTGCTGTCCTCGATTCCAG
TTGCTCCTGCCTCAATACCATGATCGAGCAAAGGGCTGGTTCTTCCCTGC
GCAGTGCTACTGCCGCTGTCACCTGGTTGGCGCTTCTGATCGTCTGCTAC
TGCCACGGCCGCAAGGGTAGTGGTATTGACGATTTGCGTTTTTTTCTCTG
GTTGCTCCTGCCTCAATACCATGATCGAGCAAAGGGCTGGTTCTTCCCTG
CGCAGTGCTACTGCCGCTGTCACCTGGTTGGCGCTTCTGATCGTCTGCTA
CTGCCACGGCCGCAAGGGTAGTGGTATTGACGATTTGCGTTTTTTTCTCT
GG
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