mRNA_L-elsbetiae_contig1872.5476.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1872.5476.1
Unique NamemRNA_L-elsbetiae_contig1872.5476.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1872.5476.1 vs. uniprot
Match: A0A6H5JAN0_9PHAE (NYD-SP28 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAN0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.620e-6
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 2 
Query:  173 QVWAMHREEVLEAITKVLQADEIIHQQ 253
            QVW+MHREEVLEAI KVLQADEIIHQQ
Sbjct:  399 QVWSMHREEVLEAINKVLQADEIIHQQ 425
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1872.5476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAN0_9PHAE4.620e-692.59NYD-SP28 domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1872contigL-elsbetiae_contig1872:20207..21098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size256
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1872.5476.1prot_L-elsbetiae_contig1872.5476.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1872 20207..21012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.4260917-CDS-L-elsbetiae_contig1872:20206..202311622815779.4260917-CDS-L-elsbetiae_contig1872:20206..20231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1872 20207..20231 -
1691683097.1057787-CDS-L-elsbetiae_contig1872:20206..202311691683097.1057787-CDS-L-elsbetiae_contig1872:20206..20231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1872 20207..20231 -
1622815779.4372962-CDS-L-elsbetiae_contig1872:20869..210121622815779.4372962-CDS-L-elsbetiae_contig1872:20869..21012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1872 20870..21012 -
1691683097.123379-CDS-L-elsbetiae_contig1872:20869..210121691683097.123379-CDS-L-elsbetiae_contig1872:20869..21012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1872 20870..21012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.4493635-UTR-L-elsbetiae_contig1872:21012..210981622815779.4493635-UTR-L-elsbetiae_contig1872:21012..21098Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1872 21013..21098 -
1691683097.1330817-UTR-L-elsbetiae_contig1872:21012..210981691683097.1330817-UTR-L-elsbetiae_contig1872:21012..21098Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1872 21013..21098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1872.5476.1

>prot_L-elsbetiae_contig1872.5476.1 ID=prot_L-elsbetiae_contig1872.5476.1|Name=mRNA_L-elsbetiae_contig1872.5476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MMLPLSLFVFCTVGDNISNCLPGCLREYIRCGLCIERKCWRPSPRSYRRT
RSSTNS
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mRNA from alignment at L-elsbetiae_contig1872:20207..21098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1872.5476.1 ID=mRNA_L-elsbetiae_contig1872.5476.1|Name=mRNA_L-elsbetiae_contig1872.5476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=892bp|location=Sequence derived from alignment at L-elsbetiae_contig1872:20207..21098- (Laminarionema elsbetiae ELsaHSoW15)
GTACATACGTAGCGTAAACCGCAGAGGTCGTGTTCCGGTAAAAGCACCAA
ACAATCATATTTGGTAGATGTTTTGTTAGTCTTGTCATGATGCTTCCCCT
CAGCCTGTTTGTTTTTTGCACAGTCGGCGACAACATATCGAACTGTTTGC
CTGGCTGTCTGCGTGAATATATCAGGTGTGGGCTATGCATCGAGAGGAAG
TGCTGGAGGCCATCACCAAGGTCCTACAGGTACGGCTAGCTCATCTCTCT
CACTATTCTACTCATGGGTTCAAATCGTGCAACGTTGGCCGTTTAGATAG
AGCCCGCACTACCAATGAGCGGCTGTCGTTAGTTCCAACGTTTCAAGATG
TACGTGTATTGAATGGATGTAATTTGTCAACAAAAATCCCTTACCGGAGC
CGACTGCGACGCTGGCTGCAACGGAGATGGTATTATGGACAGATCGCACC
AAGAGGCGGGCACGCAGTATCCATTCACTGCGTTACCTCCGTATATTTTC
CCGCCTACTTTTAACCCCGTCCGACTTTGGCTCTTTTACTCTTTTATTCT
CCTGCATGGATCCCAAGCATTGTCGCCCTTTCGCTGCCTGCGGTACGAGC
CAACGCCGCCAGCCAAGGTTCCGCAGGGATTCGTGCGGCACAGTACAGCT
ATCAACCCCCCCTCCCCTTCCGACCAAAAACAACGAAAGCCGCAAACGAG
CACTCTAAACAAAGGGCAGTAAGCAGCAAAGAGTAGCAGCAGACTGGCAT
GCGCTGTACGATGACCGCGTTCGTTTGTTTATTCCGCACACCCCCACACC
CCAACCCCGAATCACAAAAGTCGCGGCACGAACACGAAAGCAATGAAAAA
AGCCTCCTCCCCACCAGGCGGACGAGATCATCCACCAACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1872:20207..21098-

>mRNA_L-elsbetiae_contig1872.5476.1 ID=mRNA_L-elsbetiae_contig1872.5476.1|Name=mRNA_L-elsbetiae_contig1872.5476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig1872:20207..21098- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCTTCCCCTCAGCCTGTTTGTTTTTTGCACAGTCGGCGACAACAT
ATCGAACTGTTTGCCTGGCTGTCTGCGTGAATATATCAGGTGTGGGCTAT
GCATCGAGAGGAAGTGCTGGAGGCCATCACCAAGGTCCTACAGATGATGC
TTCCCCTCAGCCTGTTTGTTTTTTGCACAGTCGGCGACAACATATCGAAC
TGTTTGCCTGGCTGTCTGCGTGAATATATCAGGTGTGGGCTATGCATCGA
GAGGAAGTGCTGGAGGCCATCACCAAGGTCCTACAGGCGGACGAGATCAT
CCACCAACAGCGCGGACGAGATCATCCACCAACAGC
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